TCONS_00018930-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00018930-protein
Unique NameTCONS_00018930-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length272

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018930-protein ID=TCONS_00018930-protein|Name=TCONS_00018930-protein|organism=Clytia hemisphaerica|type=polypeptide|length=272bp
MSLQKLDINPKYISILKSVGIFTVDKVLVYSNLELQKKTNLTESKIKEVL
HAAANYVVTQRVKQASVLDVYTKSSSAIDFQVDKLKTGCDDIDSILSGGL
LIPGVTEVSGESSSGKTQFCLQTCILTSRAYNDCKCLYICTEDAFPNKRL
IQMTTSHSMSKTESQSITDRIFVEHVEDLETLISFLETRIINLLSNHKLK
LIIIDSITALFRVEFENWELAARAKTLATVGKLLHKLSHQYKICVICVNQ
VSAVFEPESSLSKREEKFVPAL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010610XLOC_010610Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018930TCONS_00018930Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013632DNA_recomb/repair_Rad51_C
IPR020588RecA_ATP-bd
IPR027417P-loop_NTPase
IPR010995DNA_repair_Rad51/TF_NusA_a-hlx
Vocabulary: Molecular Function
TermDefinition
GO:0008094DNA-dependent ATPase activity
GO:0005524ATP binding
GO:0003677DNA binding
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0008094 DNA-dependent ATPase activity
molecular_function GO:0000166 nucleotide binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 176..196
NoneNo IPR availableGENE3D1.10.150.20coord: 1..59
e-value: 2.6E-4
score: 20.8
NoneNo IPR availableGENE3D3.40.50.300coord: 83..268
e-value: 2.9E-28
score: 98.7
IPR013632DNA recombination and repair protein Rad51-like, C-terminalPFAMPF08423Rad51coord: 79..263
e-value: 4.5E-37
score: 127.6
IPR020588DNA recombination and repair protein RecA-like, ATP-binding domainPROSITEPS50162RECA_2coord: 81..251
score: 33.827
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 82..257
IPR010995DNA repair Rad51/transcription factor NusA, alpha-helicalSUPERFAMILY47794Rad51 N-terminal domain-likecoord: 3..57

Blast
[Close]
BLAST of TCONS_00018930-protein vs. Swiss-Prot (Human)
Match: XRCC3 (DNA repair protein XRCC3 OS=Homo sapiens GN=XRCC3 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.835e-50
Identity = 97/289 (33.56%), Postives = 162/289 (56.06%), Query Frame = 0 
Query:    1 MSLQKLDINPKYISILKSVGIFTVDKVLVYSNLELQKKTNLTESKIKEVLHAAANYVVTQRVKQASVLDVYTKSSSAIDF--QVDKLKTGCDDIDSILSGGLLIPGVTEVSGESSSGKTQFCLQTCILT--SRAYN--DCKCLYICTEDAFPNKRLIQMTTSHSMSKTESQS-------ITDRIFVEHVEDLETLISFLETRIINLLSNHKLKLIIIDSITALFRVEFENWELAARAKTLATVGKLLHKLSHQYKICVICVNQVSAVFEPESS----LSKREEKFVPAL 272
            M L  LD+NP+ I+ +K   + +V +VL +S  +L++ TNL+  ++  +L  A+ ++     + +S+L           F  Q  +L  GC  +D++L GGL + G+TE++G SS+GKTQ  LQ C+     R +   +   +YICTEDAFP+KRL Q+       +T+             +IF+EHV D++TL+  +  ++  LLS    +L++IDS+ A FR EF++   A RA+ L ++G  L +LS  ++  V+C+NQV+   E + +    L   +E+  PAL
Sbjct:    1 MDLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHL-----RGSSILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGATLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPAL 284
The following BLAST results are available for this feature:
BLAST of TCONS_00018930-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
XRCC37.835e-5033.56DNA repair protein XRCC3 OS=Homo sapiens GN=XRCC3 ... [more]
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