TCONS_00018472 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018472
Unique NameTCONS_00018472
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length721

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018472 ID=TCONS_00018472|Name=TCONS_00018472|organism=Clytia hemisphaerica|type=transcript|length=721bp
TAGTATGCTACGGTTAAACACGACTGCGACCACTTCTTGTTGGTTTCTTG
TTTGCTCGATTACCCATTTAAATTTACGATACTTTCATGCCGATAAGGAG
GGCAATCGAgaccaaaaataaaatacatTGCTTGAAACCACCACCGAAGT
TCCTTTACATTTTATTTCTCGTTAGAAACTTGTCTGGAAGatgGCCAAGG
TCAAGGCTCACGAGTTACGAGGAAAAAAGAAGGAAGAACTCCTTCATCAA
CTCAATGAGTTGAAGACTGAATTACAACAACTCCACGTTGCTAAAGTTAC
TGGTGGTGCTCCATCCAAATTATCTAAAATcAAAGTTGTTCGTAAATCGA
TCGCCCGTGTGTTAACCGTCATCTCGCAAACTCAACGTGAGAACTTACAA
AAGTTCTACAAGAACAAGAAATACATTCCTCTTGATTTACGTGTCAAAAA
GACCAGAGCCCAACGAAGAgctttgacgaaaaaagaagCTGCTAGAAAAA
CTCTACGACAAGTCAAGAGAGACTCTCATTTCAGTCTTCGAAAATATGCT
GTCAAAGAATAAAACCCTTCCAGCATAAATTTCTTGTTTCATTTAAATTG
TCTACCTTTGAAATGATTCTACTTGAACCTCGTTTTGCTAGCTCTCGCCT
CTTTCTCCCGTGATTTTTGACGTCCATCGCGATCAATCTTTCACCGTCAA
CAAATCTGAAATGAACGATCG
Run BLAST on NCBI

protein sequence of TCONS_00018472-protein

>TCONS_00018472-protein ID=TCONS_00018472-protein|Name=TCONS_00018472-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
MAKVKAHELRGKKKEELLHQLNELKTELQQLHVAKVTGGAPSKLSKIKVV
RKSIARVLTVISQTQRENLQKFYKNKKYIPLDLRVKKTRAQRRALTKKEA
ARKTLRQVKRDSHFSLRKYAVKE
Run BLAST on NCBI

transcript from alignment at sc0000300:141117..149214-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018472 ID=TCONS_00018472|Name=TCONS_00018472|organism=Clytia hemisphaerica|type=transcript|length=8098bp|location=Sequence derived from alignment at sc0000300:141117..149214- (Clytia hemisphaerica)
TAGTATGCTACGGTTAAACACGACTGCGACCACTTCTTGTTGGTTTCTTG
TTTGCTCGATTACCCATTTAAATTTACGATACTTTCATGCCGATAAGGAG
GGCAATCGAGACCAAAAATAAAATACATTGCTTGAAACCACCACCGAAGT
TCCTTTACATTTTATTTCTCGTTAGAAACTTGTCTGGAAGATGGTAATGA
ATTTAAAATATCCTCTTATATCTCTGGCACCCAAGTCCTAGCAAAAGGAA
TATTTAGCTTCAGAAGTCATTCAGTTATTCAGCTAGTATTTTTGTAAATT
ATTTTCCCAGTTGGAAGAAAATTTAAGCTGGAGAGACGTCCTTATTGACC
AGCTATGTCATAGTGGACCAGTAGCAGTAATTGAAATCCAAACGTAACAC
AACATTTTACAGTTCATCATCTTGGTTACAGTTTTATGCTTAACATTTTC
AATATTATCAAGTTTATGTTTGTTGATTTATACTGCTGATTTACTATGAT
TTATAACCATCATAAAAGTGCGCATTTGGTGTTTTTGCTGTCCAACTTTG
TTTGGGATTATTAAGGAAGTTAGCTTTTCAGGCTTATGCAAATATATTNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNGGGATTTTGTTCGACAGAACTTAAGAAAAGCTCAAAA
AACCAACTTTCCCTAAGGGAACGCAGGCAAAAACGGGTTTGTTTACCTCC
AGAGACCAAATGGTGGAGGGCATCAAAATAATGCGCGCGCATTAGTTTTA
CGAATTACGGGAAAGGTGTATTCCCAAATGAGACTTCAGTTCTCCACCAA
GATTCAAACTCATCTAGTTAATTACTAATTTTACGTCNCCCAAATGAGAC
TTTAAGTTCTCCACCAAGATTCAAACTCATCCAGTTAATTACTAATTTTA
CGTTGTTATGACATTTTAAATTTTGAGAAAGATGCAAAAACATGCTATGT
ATAAGAAATTGAATATTGACACAAGAAATTTTTAAACTTCAACCTCAAAA
AATCCACCGTGCCACCAAAAGATTTTCATACCACAGTGGAGCTATGAGAC
TCACGTCTAATATATGTCAATCTCAGCTCTTCTTGGGGAAATATTGGAAA
GATATTCCCAGTTCAAAATTTTGTGTCATTATAAGCATTTTGTCTGATCG
TCTGATGATGTTTTTCTCACACCAGATTTCATAAATGTATTTGCTTGGTA
TTCTAGCATTTATTTTCAAACTTTTAGCCAGCAAAAAAGTACGATCAGAA
AAAGTTAGAACTTTTTAGAAATTAGAGTATTAATCATTTTTCAAAATTAG
AGTCCTTTGCGCCTCCATGATAGTTGTCCTTTGCGGACAAAGCCTGTACA
TTGATTGTTTTCTGAAACAATAGAAAGACAATACTTCGCTCTCCACCGTT
TCATTCGATGTTTATCCAGAGTCTTATAATAAATCCATGCTTTCAGGAAA
TGGAAGTTGACATTTAAAAAACTGGAATATTTGCTTACTGACCAGTACTG
ACCCTATTTTTTCCGAAGTCTTTTTTTTTAATAGGTCAGAGGATGCTAAA
TCAACTAATGAATTTAATTTATCACAATTGTTTTTGAATAAACTCATTTA
TTATATATTGTTGCATCAAAATAAAAAAGATTTCGGACCATTTATTTTTT
GAAAATTGAGCTATGACCAACACTTTAGACCCCATTTTTTATTGATTTTT
TGGTTTAAATCCATCAAAAACTAACCTAAAGTGACCTAATTTAAGATTTT
AGAAAAATAAGAATTTTACTTTTCAGTTTATTTTCAGGGTAAAAAATCCT
TAAGTCACTTCGGTTTAGGGCAAAAAAGCCTTAAGTCCACTTAAAACTTT
TTTATTTTGATGCAAAGATATACATTTTTAAGCATAAATTCATTTGAAAA
CCTTTCCTGGTCAAAACTGCTTCATAATTCTCTAAATCTAAACTATTTTT
GTGTTGGGAAATTTTCAGTCTCAATCTTCTTGCATATTTTATGAAAATAT
TTATGTTGCGTTTTTAAATCAATCTAAATTCTGTCTCAAAATAATTTGCA
GCTGAGACAAAAAATGGCTGTAAATTTTGATAGAATTTGAATCAAGTTGC
GATTTTGTGCTCGTTGAAAAGATATTTGTGAGTGGAATATTATCAAGCAA
AAACAAATTGAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAAAA
ATGAAGAAGAAAAAAATCAACTTCTTGTAGAAATGTGGTAAAATTACCAT
TTTCACAGGAGTGATTCTTCAATCTTAGATCATCGTCACTGTGAAAAAAA
TTTTTAAAAATATTCATTTAAAGGGAACGACGCATGGTATATTTATGAAA
TGCTGATCTAGCATCCATACGGAGGAGTATTTAGGAGTGCTGGATCATAA
CAAAAACCAAAAGTGACTTTATTCCAAAAAATATATTCAAAAGAGTGAAT
ATAATTTACTATAATGTTCAACAACAACACAAAAAGACTTACATAAAACT
GAAAGAAAAAAAGAATGTCTTTTTCTTTTGAATGAAATCGAGTGTTTNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
GCCAATCAGCTTTCGGGCTGACATCAGCATGTATTTCAGAGTATACCATG
GAAGTGCCACCAAATCCGACCCCTACTATAAGTATAGCGCTATAGCCTTT
AATAAAAATATATCAAACAAAGTTTATGGCTAGTCGACTCTATAAAGTAC
TATAAAGTAGTAAAAAACAACAAAAAAACAGCCCTTTGTCGATCAACCAA
TAACAAACTTTGTTTGATATATTTTTCTGTACATGAAAAATTGGCAAAAA
TCAGCCCGTTGTTTTTCCAGTGTCTATAATAATTCCATGCTGAAAGAAAA
AGCTGGTTAAAACAAGTGGTGAACTCGTATCTTCAAAGTAGCACACTGAA
ATAAAGATGTATATGATTGCAGTCTAATAGCTCTTTAGAAAATAGTTAAG
AGTACAGTAAATGCAGAGTGTTCAGAATTATAGTTTTTAAATATATTTTC
ATCATAATATTAGAGAACATTTCCTTTTTAATTGGCACACTGTTTGTAAA
AACCTTTATTGAAGTGATTTGTAACTATTAGAAACAATGGGCCATTCCAG
TTTTTATCTGTTACCTCCCCCCTCCAATTTTTAAAAACCGTTATTCATAT
GATAATGAATGGACTATATATGTTTACTCTTTTTAACCTTCAGGCCAAGG
TCAAGGCTCACGAGTTACGAGGAAAAAAGAAGGAAGAACTCCTTCATCAA
CTCAATGAGTTGAAGACTGAATTACAACAACTCCACGTTGCTAAAGTTAC
TGGTGGTGCTCCATCCAAATTATCTAAAATGTAAGTTGTCTTAAATTGCA
AGAAGAACAGATATTTAAGTTAGCCAAATGATGACTTATGATAGGAATTG
CGGTCTGAACGACAATTGAAGCCAATCATTTATGTCTGATGGTTGTCTTA
TTTTTTGTCTGTACAATCGATATTGATTGGTGTTGTAATTTTTCATTTTA
TTTTTTTGGCATATGCAAAGTTTGTTTTTCTTTTAGAATTCAAGTCACCT
TAGAAACTTCAGAATTTAAAAAGCGCAGTCTCGCGGAAATATCATGGTTT
CAGGCCCCCCCCCCCCAGAAATCTGAAGGGCACCTAGGCCAAGTTAGTAG
TAGGGGGCTAATGTTGTGCAATTCTTTGGGGTTACCTATTCATCAAGGGT
ACCTAGCTGTCTTGATGGAGGCTCTGGGGGCTGGTTATATTTTCCAAATC
AAATATTTCAAATTATTGAATTTTTTTACCCCAGCACCTAGTTTCCCATC
CAATTTTTCTTTCGTTTCCCATCGCGCCATCTTTTGCTATATTTTTCTAA
TGTGATTGTTTTGGTTTACAGCTGCCATCTTTATAGCATAACAACAAAGC
TTATTAGCAGGCGTTCATGTGTGAGCGCTTCCCATGCCATCACAGAGAAG
CTAAAACGTCAGGATATAAGAGCCACCCCAAACCACCCCAAAAATCATTT
TGGGAATGACAAAAGAACAAAAAGTGTCAATTCAAAAAAATTATTGGCTG
AATAGGGGTACCTAACTCAAAGCAATTTCTCAAGGGGACCTAACTCATTG
GGGTACCATGCTTTAATGGGGCACCTGAAAAGTGGGCTGAAACCATGAAT
ATAGCTTCATCATTTAACCCTGTTGTTTAAAAAATTTACAGTTTGCACAA
TTAGGCGGTCATCGAAAAAATGCTCTGTTCGCGTCGCAACGGGTGTTAAA
AATGCAAGCGGGTGGACGGGCGGTCAAAAACATTCCCAGGTTTTTTTTTA
ATCACGCCAGTAACTCAGGGGTGGGTGGTAACGCAAGCAAAACAATTTTT
CGATGGTCGTCAGAGCAATTGAGAAAAAAGCTATACTTAAAAAGAACAAA
TCGCTTTTCCCAGATTTTTTTCCGCATCTCCGCACTGGAGGGAAATAGAA
AATCAGCAGAAAATTTGATGCGGGCGGGTGACGCGAATAGAACAATTTTT
CGATGACCGCCTTATGGCTTTAGAAAAGAGACGTGTACCTCCTTGTAAAA
ATAATTTTGACACATTAAGATTTAGGCTCTAAAAAATAAAATGAACAAGA
AAGATCTAGAAAGAAGCCTTGAAATATTCCGCTGGAGACAGCTTGAGATC
ACTTCTCCAGTGAGGTATTACTTTCAATTATATCTTGTCTCCTTTATGCA
ATAACTTTTACAGTGCCTCAAAATTTTGCATATTTATTTCGACTTTTTTA
ACTATTTACAAAATCAGGGAAAATACGTTATTTTGAAATTTCATTTAACT
TACTTGTAGGCAAGTTTTTTGGACCTACCCCGGTGGGGGTCCTATAAATT
AACCCTATTCGGACTAGGGGGGGCTCTTTCTGTTCNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTG
CTCACTTTGGGCATGATGAGTGACGTCATCAAAATAAATTTTTGTCAAAA
GTTACCTTATGTGTCAAGGATCTTGTGTGCCAAATTTCATCCAAAAGGGC
CCACTAGATCAAAAGTTAAGGGGTGGTACAGGAAAAGCCCCCCCCTAGTT
CTGAACCGCCCCTAAAAGCCTAGGTTGAATAGGGTTAACCTGTGTTTGTT
CGTTCGTTCGTTCGTCTGTTACCAACTTTTCTCAGGATTGAATCATAGGA
ATCTTTTGATTTTTGGTACAAAAGTGCAAAATGGTGGTGGCCAAAATGTG
ATGGAGCCCGAATTTCGAAATCTTTTGGGCAAATTTGGGCCAAAATACGG
TTATAATACGGGTTTTTGGATTTTGTGAAGAAATTGGATCATTAATATGA
CATAATATTTATGTNATCTAATTTGGGCCAAAAAACGGCTAAAAAAGGGT
TTTTTGGACTTTGTGAAATATTGGATCATTGTTTTTTTCTGATTTTTTAC
ATGAAAGTAGGTAAAGATGGCTCAAGCAGATTTTTGCGAAAAAAGAATTT
TTCAGCTCAAAAAACACATCTTTATTTATAAGAATCACTATTAATAAGTA
TACATCAATTTTATTAGCCAAATTACTCAATTTTTTAATGAGATAGATGT
TGTTTTTTTTGCTCACGAAGTCTTGAGTATGAAAGATTACTTCAAGAGCA
TGAAATTTTGGTTTCTAAACGTTTTTTTTTATAAGAAACAAACGACTAAT
TTTGATAGATCGTCACTATTTGTGTTCTGAATGATTGTTTTAACTGTCAT
GCTCACGTATCAATTATATTTGTTAAATGCATAACCAGGTAGGTCCATAA
AAGTATCACTTGTTTTTTCAGACATCTTGGTCAGTTAGAAAAGTATGTTA
AAAGGAATGCACTCCAAATGTCATTTATTTGGAACAGACTTTAATTAGAG
CCATACTCACAGTGGAGGGGTTGCCTATTGATGTTTAGTTACGAGGCCTC
ATGATATAAGTGACTTCAAAGCCCACGTCCATATTTGGCTAAACCTTGTT
AGAAAAAGCCTACCAAACCAAATGATGACTTTTGATAGGAATTGCCGTCT
GAACGACAATTGAAGCCAATCATTTATGTCTGATGGTTGTTTTACTTTTT
GTCTGTACAATCGATATTGATTGGTGTTGTAATTTTTCTTAAATTACATG
AAGAGACGAGGTTTAAGTCCGCCAAATGATGACTTTTGATAGTAATCGTC
AGCCGTGCAAAATTACTCGAATCTGATTGGTTTAGAGGAGTGCAATTAAT
CGTTAATTGCACTATTACCACTTTTTGCACTCTTCGGCGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNAATTTGCACTCGTCCTTCGGACTCGTGCAAATTACTATTTTC
TCCTTTGTTACTCGTGATTAATCGTTAATTGCACTCCAAACCATACGATT
ACTAGTACGAATTGCCGTCTGAACGTCAATTGAAGCTGAATTTTTAGTCT
GATGGTTTAACTCGCTTTCATATTCACTATATTCGATATTCACCATTCTT
ATCGCTATAGACAATGCTTTTCTTGATTCTGAAACATTTCGTTTCCTTTT
TTTTCAGCAAAGTTGTTCGTAAATCGATCGCCCGTGTGTTAACCGTCATC
TCGCAAACTCAACGTGAGAACTTACAAAAGTTCTACAAGAACAAGAAATA
CATTCCTCTTGATTTACGTGTCAAAAAGACCAGAGCCCAACGAAGAGCTT
TGACGAAAAAAGAAGCTGCTAGAAAAACTCTACGACAAGTCAAGAGAGAC
TCTCATTTCAGTCTTCGAAAATATGCTGTCAAAGAATAAAACCCTTCCAG
CATAAATTTCTTGTTTCATTTAAATTGTCTACCTTTGAAATGATTCTACT
TGAACCTCGTTTTGCTAGCTCTCGCCTCTTTCTCCCGTGATTTTTGACGT
CCATCGCGATCAATCTTTCACCGTCAACAAATCTGAAATGAACGATCG

Coding sequence (CDS) from alignment at sc0000300:141117..149214-

>TCONS_00018472 ID=TCONS_00018472|Name=TCONS_00018472|organism=Clytia hemisphaerica|type=CDS|length=1116bp|location=Sequence derived from alignment at sc0000300:141117..149214- (Clytia hemisphaerica)
CAAAGTTGTTCGTAAATCGATCGCCCGTGTGTTAACCGTCATCTCGCAAA
CTCAACGTGAGAACTTACAAAAGTTCTACAAGAACAAGAAATACATTCCT
CTTGATTTACGTGTCAAAAAGACCAGAGCCCAACGAAGAGCTTTGACGAA
AAAAGAAGCTGCTAGAAAAACTCTACGACAAGTCAAGAGAGACTCTCATT
TCAGTCTTCGAAAATATGCTGTCAAAGAATAAGCCAAGGTCAAGGCTCAC
GAGTTACGAGGAAAAAAGAAGGAAGAACTCCTTCATCAACTCAATGAGTT
GAAGACTGAATTACAACAACTCCACGTTGCTAAAGTTACTGGTGGTGCTC
CATCCAAATTATCTAAAATATGCAAAGTTGTTCGTAAATCGATCGCCCGT
GTGTTAACCGTCATCTCGCAAACTCAACGTGAGAACTTACAAAAGTTCTA
CAAGAACAAGAAATACATTCCTCTTGATTTACGTGTCAAAAAGACCAGAG
CCCAACGAAGAGCTTTGACGAAAAAAGAAGCTGCTAGAAAAACTCTACGA
CAAGTCAAGAGAGACTCTCATTTCAGTCTTCGAAAATATGCTGTCAAAGA
ATAAGCCAAGGTCAAGGCTCACGAGTTACGAGGAAAAAAGAAGGAAGAAC
TCCTTCATCAACTCAATGAGTTGAAGACTGAATTACAACAACTCCACGTT
GCTAAAGTTACTGGTGGTGCTCCATCCAAATTATCTAAAATATGCAAAGT
TGTTCGTAAATCGATCGCCCGTGTGTTAACCGTCATCTCGCAAACTCAAC
GTGAGAACTTACAAAAGTTCTACAAGAACAAGAAATACATTCCTCTTGAT
TTACGTGTCAAAAAGACCAGAGCCCAACGAAGAGCTTTGACGAAAAAAGA
AGCTGCTAGAAAAACTCTACGACAAGTCAAGAGAGACTCTCATTTCAGTC
TTCGAAAATATGCTGTCAAAGAATAAGCCAAGGTCAAGGCTCACGAGTTA
CGAGGAAAAAAGAAGGAAGAACTCCTTCATCAACTCAATGAGTTGAAGAC
TGAATTACAACAACTCCACGTTGCTAAAGTTACTGGTGGTGCTCCATCCA
AATTATCTAAAATATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010348XLOC_010348Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018472-proteinTCONS_00018472-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018472-exon-sc0000300-1575043694:149022..149214TCONS_00018472-exon-sc0000300-1575043694:149022..149214Clytia hemisphaericaexon
TCONS_00018472-exon-sc0000300-1575043694:145335..145471TCONS_00018472-exon-sc0000300-1575043694:145335..145471Clytia hemisphaericaexon
TCONS_00018472-exon-sc0000300-1575043694:141117..141507TCONS_00018472-exon-sc0000300-1575043694:141117..141507Clytia hemisphaericaexon
TCONS_00018472-exon-sc0000300-1510915933:149022..149214TCONS_00018472-exon-sc0000300-1510915933:149022..149214Clytia hemisphaericaexon
TCONS_00018472-exon-sc0000300-1510915933:145335..145471TCONS_00018472-exon-sc0000300-1510915933:145335..145471Clytia hemisphaericaexon
TCONS_00018472-exon-sc0000300-1510915933:141117..141507TCONS_00018472-exon-sc0000300-1510915933:141117..141507Clytia hemisphaericaexon
TCONS_00018472-exon-sc0000300-1491911889:149022..149214TCONS_00018472-exon-sc0000300-1491911889:149022..149214Clytia hemisphaericaexon
TCONS_00018472-exon-sc0000300-1491911889:145335..145471TCONS_00018472-exon-sc0000300-1491911889:145335..145471Clytia hemisphaericaexon
TCONS_00018472-exon-sc0000300-1491911889:141117..141507TCONS_00018472-exon-sc0000300-1491911889:141117..141507Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000300supercontigsc0000300:141117..149214 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1697.18	1697.86	1914.02	2021.25	1302.62	1099.64	1425.65	1599.06	2376.41	1832.99	2215.24	2952.21	3402.81	3401.1	2774.4	2765.6	2782.32	2916.3	1550.24	1789.63	3028.55	2923	2553.66	2413.02	1917.49	3087.99	3043.38	2971.56	2144.46	2158.62
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001854Ribosomal_L29/L35
IPR018254Ribosomal_L29_CS
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Blast
[Close]
BLAST of TCONS_00018472 vs. Swiss-Prot (Human)
Match: RL35 (60S ribosomal protein L35 OS=Homo sapiens GN=RPL35 PE=1 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 4.885e-50
Identity = 88/122 (72.13%), Postives = 101/122 (82.79%), Query Frame = 2 
Query:  191 MAKVKAHELRGKKKEELLHQLNELKTELQQLHVAKVTGGAPSKLSKIKVVRKSIARVLTVISQTQRENLQKFYKNKKYIPLDLRVKKTRAQRRALTKKEAARKTLRQVKRDSHFSLRKYAVK 556
            MAK+KA +LRGKKKEELL QL++LK EL QL VAKVTGGA SKLSKI+VVRKSIARVLTVI+QTQ+ENL+KFYK KKY PLDLR KKTRA RR L K E   KT +Q +++  + LRKYAVK
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYAVK 122
The following BLAST results are available for this feature:
BLAST of TCONS_00018472 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL354.885e-5072.1360S ribosomal protein L35 OS=Homo sapiens GN=RPL35... [more]
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