TCONS_00018472-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00018472-protein
Unique NameTCONS_00018472-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length123

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018472-protein ID=TCONS_00018472-protein|Name=TCONS_00018472-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
MAKVKAHELRGKKKEELLHQLNELKTELQQLHVAKVTGGAPSKLSKIKVV
RKSIARVLTVISQTQRENLQKFYKNKKYIPLDLRVKKTRAQRRALTKKEA
ARKTLRQVKRDSHFSLRKYAVKE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010348XLOC_010348Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018472TCONS_00018472Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001854Ribosomal_L29/L35
IPR018254Ribosomal_L29_CS
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 14..34
NoneNo IPR availableGENE3D1.10.287.310coord: 1..70
e-value: 8.9E-30
score: 102.4
IPR001854Ribosomal protein L29/L36PFAMPF00831Ribosomal_L29coord: 8..63
e-value: 3.6E-19
score: 68.4
IPR001854Ribosomal protein L29/L36TIGRFAMTIGR00012TIGR00012coord: 8..63
e-value: 4.2E-19
score: 66.3
IPR001854Ribosomal protein L29/L36HAMAPMF_00374Ribosomal_L29coord: 4..64
score: 13.11
IPR001854Ribosomal protein L29/L36CDDcd00427Ribosomal_L29_HIPcoord: 8..63
e-value: 1.02058E-10
score: 52.1047
IPR001854Ribosomal protein L29/L36SUPERFAMILY46561Ribosomal protein L29 (L29p)coord: 4..64
IPR018254Ribosomal protein L29, conserved sitePROSITEPS00579RIBOSOMAL_L29coord: 43..57

Blast
[Close]
BLAST of TCONS_00018472-protein vs. Swiss-Prot (Human)
Match: RL35 (60S ribosomal protein L35 OS=Homo sapiens GN=RPL35 PE=1 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 3.357e-53
Identity = 88/122 (72.13%), Postives = 101/122 (82.79%), Query Frame = 0 
Query:    1 MAKVKAHELRGKKKEELLHQLNELKTELQQLHVAKVTGGAPSKLSKIKVVRKSIARVLTVISQTQRENLQKFYKNKKYIPLDLRVKKTRAQRRALTKKEAARKTLRQVKRDSHFSLRKYAVK 122
            MAK+KA +LRGKKKEELL QL++LK EL QL VAKVTGGA SKLSKI+VVRKSIARVLTVI+QTQ+ENL+KFYK KKY PLDLR KKTRA RR L K E   KT +Q +++  + LRKYAVK
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYAVK 122
The following BLAST results are available for this feature:
BLAST of TCONS_00018472-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL353.357e-5372.1360S ribosomal protein L35 OS=Homo sapiens GN=RPL35... [more]
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