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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018427 ID=TCONS_00018427|Name=TCONS_00018427|organism=Clytia hemisphaerica|type=transcript|length=2110bpRun BLAST on NCBI protein sequence of Tetratricopeptide repeats containing protein >TCONS_00018427-protein ID=TCONS_00018427-protein|Name=Tetratricopeptide repeats containing protein|organism=Clytia hemisphaerica|type=polypeptide|length=652bp MANANDLQIWFDAVQLYDNGDIDISIEMFQSAKQTAKMLFNIGCCYLKKDRun BLAST on NCBI transcript from alignment at sc0000300:238897..245474+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018427 ID=TCONS_00018427|Name=TCONS_00018427|organism=Clytia hemisphaerica|type=transcript|length=6578bp|location=Sequence derived from alignment at sc0000300:238897..245474+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000300:238897..245474+ >TCONS_00018427 ID=TCONS_00018427|Name=TCONS_00018427|organism=Clytia hemisphaerica|type=CDS|length=17631bp|location=Sequence derived from alignment at sc0000300:238897..245474+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00018427 vs. Swiss-Prot (Human)
Match: NCF2 (Neutrophil cytosol factor 2 OS=Homo sapiens GN=NCF2 PE=1 SV=2) HSP 1 Score: 129.798 bits (325), Expect = 1.119e-31 Identity = 64/218 (29.36%), Postives = 126/218 (57.80%), Query Frame = 3
Query: 150 MANANDLQIWFDAVQLYDNGDIDISIEMFQSAKQ-TAKMLFNIGCCYLKKDDLDNAEAHYLKALELDSHMAIAYFMLGLIYYLAEEFDYSFDRFVQAHEKLRGNRYVDYQQLGFKYKLYSCEILTNQAVVAYRQKKIRKAKTLLLEAVGCKAERKHENIEESLSLLQSGYPINPFIPPQSEIFRPPKAAVKNLKRKDYLGTAQVISTQNNDEIYACFS 800
M+ + +W + V D D +++ F + + +++ FNIGC Y ++ AE + +++ D H+A+AYF G++YY E++D + +A +LRGN+ +DY+ LG ++KL++CE+L N A + ++++ +KA+ L A K+E +H I++++ + P + P ++FRP + V L +KDYLG A V+++ + + ++ F+
Sbjct: 1 MSLVEAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGKLFRPNERQVAQLAKKDYLGKATVVASVVDQDSFSGFA 218 The following BLAST results are available for this feature:
BLAST of TCONS_00018427 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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