Tetratricopeptide repeats containing protein (polypeptide) - C. hemisphaerica

Overview
NameTetratricopeptide repeats containing protein
Unique NameTCONS_00018427-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length652

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018427-protein ID=TCONS_00018427-protein|Name=Tetratricopeptide repeats containing protein|organism=Clytia hemisphaerica|type=polypeptide|length=652bp
MANANDLQIWFDAVQLYDNGDIDISIEMFQSAKQTAKMLFNIGCCYLKKD
DLDNAEAHYLKALELDSHMAIAYFMLGLIYYLAEEFDYSFDRFVQAHEKL
RGNRYVDYQQLGFKYKLYSCEILTNQAVVAYRQKKIRKAKTLLLEAVGCK
AERKHENIEESLSLLQSGYPINPFIPPQSEIFRPPKAAVKNLKRKDYLGT
AQVISTQNNDEIYACFSGVKNRRDDFKKPSETRKKLMTDLKDIERKSSLR
PTPRPPKMLPKSPIQQNDVDFTPKRPPPRSTSRTDDTSSTPNIPQKSPRP
PSSLPRNFNSSNVQADEEPQRKASLPPPKSLPTMQNDRKFNLPPPKILPS
MPTNPVPPARSGLPRLPSITDEQPNEKQPSPRPGQRRSMSIEDPPPTYSR
SNKSKPPPPPPQEDSPPAKPPHKKPPGVLPPWQQGEFQAPQRSLPREPDE
NYNDLIMDGDDGGELYEDIDSSDYKYRPPRPPPILPKRNSESKEEESSPL
NNINQSPPRQRRGSNAQKPARKPPPPPANADLPPSPTLDPPGVVSAPPRK
FFPKSPESSMQEKDLKKELSAVLKRQSATLPPGFVDIQLPKKTVQPSAKV
TSPTMNGGNSLEYDVEIQYTFVKKIKIPDGLTLNEVTELVKSQSVPDDIE
LW
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010337XLOC_010337Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018427TCONS_00018427Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR001440TPR_1
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 70..103
e-value: 14.0
score: 13.6
coord: 36..69
e-value: 7.1E-7
score: 38.9
coord: 120..153
e-value: 93.0
score: 6.5
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 70..103
score: 6.874
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 36..69
score: 10.384
IPR001440Tetratricopeptide repeat 1PFAMPF00515TPR_1coord: 36..67
e-value: 1.3E-7
score: 31.0
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 1..323
e-value: 1.9E-25
score: 89.0
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 12..148
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 223..569
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 36..103
score: 14.65

Blast
[Close]
BLAST of Tetratricopeptide repeats containing protein vs. Swiss-Prot (Human)
Match: NCF2 (Neutrophil cytosol factor 2 OS=Homo sapiens GN=NCF2 PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 3.403e-32
Identity = 64/218 (29.36%), Postives = 126/218 (57.80%), Query Frame = 0 
Query:    1 MANANDLQIWFDAVQLYDNGDIDISIEMFQSAKQ-TAKMLFNIGCCYLKKDDLDNAEAHYLKALELDSHMAIAYFMLGLIYYLAEEFDYSFDRFVQAHEKLRGNRYVDYQQLGFKYKLYSCEILTNQAVVAYRQKKIRKAKTLLLEAVGCKAERKHENIEESLSLLQSGYPINPFIPPQSEIFRPPKAAVKNLKRKDYLGTAQVISTQNNDEIYACFS 217
            M+    + +W + V   D  D   +++ F + +   +++ FNIGC Y    ++  AE  + +++  D H+A+AYF  G++YY  E++D +     +A  +LRGN+ +DY+ LG ++KL++CE+L N A +  ++++ +KA+  L  A   K+E +H  I++++  +       P + P  ++FRP +  V  L +KDYLG A V+++  + + ++ F+
Sbjct:    1 MSLVEAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGKLFRPNERQVAQLAKKDYLGKATVVASVVDQDSFSGFA 218
The following BLAST results are available for this feature:
BLAST of Tetratricopeptide repeats containing protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NCF23.403e-3229.36Neutrophil cytosol factor 2 OS=Homo sapiens GN=NCF... [more]
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