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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018396 ID=TCONS_00018396|Name=TCONS_00018396|organism=Clytia hemisphaerica|type=transcript|length=1771bpRun BLAST on NCBI protein sequence of TCONS_00018396-protein >TCONS_00018396-protein ID=TCONS_00018396-protein|Name=TCONS_00018396-protein|organism=Clytia hemisphaerica|type=polypeptide|length=530bp MIGIKLQRLTPFSRQVSQFTKKYLHLNHRSNSKLVESYDHVVSEHKLIGKRun BLAST on NCBI transcript from alignment at sc0000297:317653..338151- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018396 ID=TCONS_00018396|Name=TCONS_00018396|organism=Clytia hemisphaerica|type=transcript|length=20499bp|location=Sequence derived from alignment at sc0000297:317653..338151- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000297:317653..338151- >TCONS_00018396 ID=TCONS_00018396|Name=TCONS_00018396|organism=Clytia hemisphaerica|type=CDS|length=23895bp|location=Sequence derived from alignment at sc0000297:317653..338151- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00018396 vs. Swiss-Prot (Human)
Match: ACSF2 (Acyl-CoA synthetase family member 2, mitochondrial OS=Homo sapiens GN=ACSF2 PE=1 SV=2) HSP 1 Score: 477.248 bits (1227), Expect = 1.162e-160 Identity = 228/500 (45.60%), Postives = 335/500 (67.00%), Query Frame = 1
Query: 136 SYDHVVSEHKLIGKTIGQVFIETVEKFPDHEAVVFHRDKKRMTFAQLDEKVNKLAASIIGLGLQKGDRVGIWGQNHLEWMITFLASVKAGTILVNVNPAYQSNELEYALNKVGMKALFMTPEFKTSNYYDILQNVTPEILHSHPGELKSKKIPTLESVILTDGPAMSGAFSFEDALAIXXXXX-XXXXXXXXXXIQFDDPVNIQFTSGTTGNPKGATLTHHNLVNNAAAIAFGLDF---TPVD-RVCIPVPLYHCFGMVLGSMACLMTGAAQVFPQRGFNAEATLDAIQTESCTAIYGTPAMFIDMLNHPSFPNINFGSMRTGIMAGSPCPIEIMKKVISDMNCPEMTIAYGLTETSPATNLTSRDTPVELRVSSIGRVIPHVETKIID-EEGHIVPVNTSGELCFRGHCVFPGYWDDVIKTKEAIDENGWFHSGDLGQIDENGYCKVVGRLKDMIIRGGENIYPTEVENFLHNHPDIEDVQIVGIPDERFGEECCAWIK 1617
SY ++ L KT+GQ T ++ P+ EA+V + R+TFAQL E+V+K A+ ++ +GL KGDR+G+WG N W++ LA+ +AG ILV+VNPAYQ+ ELEY L KVG KAL +FKT YY++L+ + PE+ ++ PG LKS+++P L +VI D P + G ++ +A G + +++ Q+ + DP+NIQFTSGTTG+PKGATL+H+N+VNN+ + L TP R+ +P PLYHC G V G+M CLM GA + FN + L+AI E T +YGTP MF+D+LN P F + + +M G++AGSP P E+++ +I+ +N ++ +AYG TE SP T + VE + S+GR++PH E +I++ E G + +NT GELC RG+CV GYW + KT+EA+D++ W+ +GD+ ++E G+CK+VGR KDMIIRGGENIYP E+E+F H HP +++VQ+VG+ D+R GEE CA I+
Sbjct: 59 SYVQGCTKKHLNSKTVGQCLETTAQRVPEREALVVLHEDVRLTFAQLKEEVDKAASGLLSIGLCKGDRLGMWGPNSYAWVLMQLATAQAGIILVSVNPAYQAMELEYVLKKVGCKALVFPKQFKTQQYYNVLKQICPEVENAQPGALKSQRLPDLTTVISVDAP-LPGTLLLDEVVAAGSTRQHLDQLQYNQQFLSCHDPINIQFTSGTTGSPKGATLSHYNIVNNSNILGERLKLHEKTPEQLRMILPNPLYHCLGSVAGTMMCLMYGATLILASPIFNGKKALEAISRERGTFLYGTPTMFVDILNQPDFSSYDISTMCGGVIAGSPAPPELIRAIINKINMKDLVVAYGTTENSPVTFAHFPEDTVEQKAESVGRIMPHTEARIMNMEAGTLAKLNTPGELCIRGYCVMLGYWGEPQKTEEAVDQDKWYWTGDVATMNEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPKVQEVQVVGVKDDRMGEEICACIR 557 The following BLAST results are available for this feature:
BLAST of TCONS_00018396 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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