|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018381 ID=TCONS_00018381|Name=TCONS_00018381|organism=Clytia hemisphaerica|type=transcript|length=1092bp
aaattaaaataggcAGAATCTCAGATCAGCATTAGAAGTGGGATGTTGAA
AGTAGACTAAGTTGCAattcttgCTGTACTTTGGCACAAGTCTAATTCAA
GATGGGGCAATCTGCAGATAAAGAATCAGAAACAACATCGATAATATACA
CAAAATAATGGAGGGCTCATCAGCGGTTACAACTGGACTACTAtgttgaa
gatgaagatgacaTTTGGGGATTTTTCGATGTTCTGAGGCTGTTAGAAGA
AGAGAATTACGAAAAATTTGAGGAAGTAATGAAAATTGATAATACGTGTA
TAAACAGATTGGTATATGATTTTGAAGATAGACCAACAATTTTATTGTAC
GTTCTAGAACGTGAAAAGGATCATTCAATTGTAGAGTATCTTGTCAATCA
TGAATATTGTGATGTCAATGTAATAGACTGGAGGGGTCAAAGTCCGTTTT
ATTTTGCTGTGCAGTTGGAGAATATTCCAGCGGTAAAATGTCTTTTAAAG
CGAGACCCAAGTGTTATTAACAAAACAACATATCATTCTTCTCCATTGCA
TCGTGCAGCACGATCAGGAAATGTTGATCTAGTTAAAATTCTGCTGGAAC
AAGATAATATCAATGTTAATATAAAAGATTATTACAAGGAGACTGCCGAC
CAGCAAGAACATGTTACCCAAGAAATTAAAAACTTAATCATAAAGAGAAG
GGAGAAGAAAAAGTAACAGTTTGTTAAAGCCTTATCAAAAGGAAGAactt
ttggcgggaatttaatttggggGGGGTGTCGAAAAAGTTTTCTCAGAGGA
GTTTGATTTTGGGTAaatctgccaaaatttctttttgccaAAATTCCTAT
TAGGGACTTGAAAATTGATTATGTAAATTtacatttatattttatttatc
atGCTTACTTTAAAGTGCTCTCAAGGTCCTGTAGTTGGAAAGTCGAAAAA
TCATTGTAAGGGGAGAGCTTTTTGAGGGCAACAAAGAGTAGGCTATTCTT
TTTTGATCTGTTTGCTTTCtccttttttgtaaaattcgGAGCACCTACAA
ttttcaacttcagttgagctagaatctgagaatgtctgtttC Run BLAST on NCBI protein sequence of TCONS_00018381-protein >TCONS_00018381-protein ID=TCONS_00018381-protein|Name=TCONS_00018381-protein|organism=Clytia hemisphaerica|type=polypeptide|length=145bp
MKIDNTCINRLVYDFEDRPTILLYVLEREKDHSIVEYLVNHEYCDVNVID
WRGQSPFYFAVQLENIPAVKCLLKRDPSVINKTTYHSSPLHRAARSGNVD
LVKILLEQDNINVNIKDYYKETADQQEHVTQEIKNLIIKRREKKK Run BLAST on NCBI transcript from alignment at sc0000297:353579..357727+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018381 ID=TCONS_00018381|Name=TCONS_00018381|organism=Clytia hemisphaerica|type=transcript|length=4149bp|location=Sequence derived from alignment at sc0000297:353579..357727+ (Clytia hemisphaerica)
aaattaaaataggcAGAATCTCAGATCAGCATTAGAAGTGGGATGTTGAA
AGTAGACTAAGTTGCAGTAAGCGTTTTTGTGAGTCATTGATATGAGAGAA
ATAAATAGATTTTCCGAGAGAACAATTACTGAATTCAGCTGATTGACTCA
TGCTAGAGTTGTGTCAACTTTCAATAACACACCAATAGCTTCCTTGTATT
TCTTTTATGTACTGAACTTACTGAACACACGCTGGGATAAAGACTAATTT
TCTCATTATTTGGTCTCttggaaaataaaaaccaattcaattttttaaag
attcttgCTGTACTTTGGCACAAGTCTAATTCAAGATGGGGCAATCTGCA
GATAAAGAATCAGAAACAACATCGATAATATACACAAAATAATGGAGgta
tataatttatttatgtAATAATGAGTGTATTATCCTCCTTTGGATAAAGA
TCATGTGTTGcctgttttaaattttaaatgagTTCAATGTTAGCCAACAT
ATTAGGATAATTATTAGGAAGTCTTGGGGAAAATAAATATCATTGaattt
tttgagttattttaTTCTTAGTGCAAATATCCTTAAATgacattcttatt
tttctaaattttgatttttgagacctgagatttttttacaaaaaattgga
TGGCCTGGGATGGCGTCATCCGACTCGATTTTCCTATAACAcgctaactt
tttttcaaagcttgTTTTATATCCTATTAACCGCTCCCAATAGCTCTTtg
tcatgattattacttctctcatttgacaaaaattcaatcccacaatcctt
ttcgtctaAATTGAAACGTTATGAAAGTTGATACaatttctttgtaattg
agtgtaatttggGTAAAGGTAATTAATGCAAAGGGTGACAGGATTGCAAT
TCGGTCAAAcaaaaaatcaatgtctatttttagatttgcCACGGTACTGT
ATGCTATTATGTTTAATTTTGGATCTAATAAGGGGTCAACCAATAGTCTa
ttatattcatttttttttaatagagatTTTCCTATTTTGGTGACGTTATT
GGATCCAAAATACCTAATAAGAATCTAAACATTTCGAAGCATCATAAAAC
CCTTCCATTTTATTCCCCATAGAATTCCAAATCCAATAAGGGGTCGATGA
CCTTTCCGctccttttcaaactcaaaatatctcaaatctctattgtcatt
ttacccCTGATATTGTCAATGGTGAATTTATGAATCTTGGATCTTTTAAA
Agaggggtttggaataagcagggtggttggaaaaattctcaaaacaaaat
aagtGGAGGGGTTGGAATAGAATGATCCTGActggaaaatatttgaaaag
gaggctaataaaTTAGATTTAGAGCCAAAGAGGGACAAAAATTACAGATG
GGCTTCTGGTAGCTTTCCAAACCTAGGTCAACTTTCATAAATCTCAAAGC
TGGCTCTTGTGTGAAGCAGTGTATTAGAGgtgtttttttgttgttaatCT
CTAAGGGCTCATCAGCGGTTACAACTGGACTACTAtgttgaagatgaaga
tgacaTTTGGGGATTTTTCGGTAAAATATTCCTCGTTAGCTtgattatta
tttattttttatttattcatagaattatatttcacaggtctatcgacctc
tacgaaataattttagatttataaattgtctaattcttcatctgtcgtcc
agtcgtcggaagatatggacagaagagaagacgttgttttggtctttgtc
ctaggttttcgaactaggcgaaggtttgttctagggcttcctcttacatg
ccaaacgaaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNtttttgattttgctaaatttca
accatttttgaagaactacacaaaatgcgtgttgactaactgacgtcaaa
taataacCTCTTTATTTTACGATACCaagcttttcaaaatttaattctCT
TTAACTTCTTCGATCTTAGTATATTGTTTATGTAAGCACATCTTGGCCAT
ACCTATGTTATTATGAAAAGACATCGAACGAATGATAATTTACTTCATGA
ATTTTGCCCTATAaatttacttgatattttatttttattttgaaccaATA
AAAATCAATGATATCTCtttttgtttgcattttagATGTTCTGAGGCTGT
TAGAAGAAGAGAATTACGAAAAATTTGAGGAAGTAATGAAAATTGATAAT
ACGTGTATAAACAGATTGGTATATGATTTTGAAGATAGACCAACAATTTT
ATTGTACGTTCTAGAACGTGAAAAGGATCATTCAATTGTAGAGTATCTTG
TCAATCATGAATATTGTGATGTCAATGTAATAGACTGGAGGGGTCAAAGT
CCGTTTTATTTTGCTGTGCAGTTGGAGAATATTCCAGCGGTAAAATGTCT
TTTAAAGCGAGACCCAAGTGTTATTAACAAAACAACATATCATTCTTCTC
CATTGCATCGTGCAGCACGATCAGGAAATGTTGATCTAGTTAAAATTCTG
CTGGAACAAGATAATATCAATGTTAATATAAAAGATTATTACAAGGAGAC
TGCCGACCAGCAAGAACATGTTACCCAAGAAATTAAAAACTTAATCATAA
AGAGAAGGGAGAAGAAAAAGTAACAGTTTGTTAAAGCCTTATCAAAAGGA
AGAacttttggcgggaatttaatttggggGGGGTGTCGAAAAAGTTTTCT
CAGAGGAGTTTGATTTTGGGTAaatctgccaaaatttctttttgccaAAA
TTCCTATTAGGGACTTGAAAATTGATTATGTAAATTtacatttatatttt
atttatcatGCTTACTTTAAAGTGCTCTCAAGGTCCTGTAGTTGGAAAGT
CGAAAAATCATTGTAAGGGGAGAGCTTTTTGAGGGCAACAAAGAGTAGGC
TATTCTTTTTTGATCTGTTTGCTTTCtccttttttgtaaaattcgGAGCA
CCTACAAttttcaacttcagttgagctagaatctgagaatgtctgtttC Coding sequence (CDS) from alignment at sc0000297:353579..357727+ >TCONS_00018381 ID=TCONS_00018381|Name=TCONS_00018381|organism=Clytia hemisphaerica|type=CDS|length=438bp|location=Sequence derived from alignment at sc0000297:353579..357727+ (Clytia hemisphaerica)
ATGAAAATTGATAATACGTGTATAAACAGATTGGTATATGATTTTGAAGA
TAGACCAACAATTTTATTGTACGTTCTAGAACGTGAAAAGGATCATTCAA
TTGTAGAGTATCTTGTCAATCATGAATATTGTGATGTCAATGTAATAGAC
TGGAGGGGTCAAAGTCCGTTTTATTTTGCTGTGCAGTTGGAGAATATTCC
AGCGGTAAAATGTCTTTTAAAGCGAGACCCAAGTGTTATTAACAAAACAA
CATATCATTCTTCTCCATTGCATCGTGCAGCACGATCAGGAAATGTTGAT
CTAGTTAAAATTCTGCTGGAACAAGATAATATCAATGTTAATATAAAAGA
TTATTACAAGGAGACTGCCGACCAGCAAGAACATGTTACCCAAGAAATTA
AAAACTTAATCATAAAGAGAAGGGAGAAGAAAAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018381-exon-sc0000297-1491911889:353579..353644 | TCONS_00018381-exon-sc0000297-1491911889:353579..353644 | Clytia hemisphaerica | exon |
| TCONS_00018381-exon-sc0000297-1510915933:353579..353644 | TCONS_00018381-exon-sc0000297-1510915933:353579..353644 | Clytia hemisphaerica | exon |
| TCONS_00018381-exon-sc0000297-1575043694:353579..353644 | TCONS_00018381-exon-sc0000297-1575043694:353579..353644 | Clytia hemisphaerica | exon |
| TCONS_00018381-exon-sc0000297-1491911889:353879..353975 | TCONS_00018381-exon-sc0000297-1491911889:353879..353975 | Clytia hemisphaerica | exon |
| TCONS_00018381-exon-sc0000297-1510915933:353879..353975 | TCONS_00018381-exon-sc0000297-1510915933:353879..353975 | Clytia hemisphaerica | exon |
| TCONS_00018381-exon-sc0000297-1575043694:353879..353975 | TCONS_00018381-exon-sc0000297-1575043694:353879..353975 | Clytia hemisphaerica | exon |
| TCONS_00018381-exon-sc0000297-1491911889:355084..355148 | TCONS_00018381-exon-sc0000297-1491911889:355084..355148 | Clytia hemisphaerica | exon |
| TCONS_00018381-exon-sc0000297-1510915933:355084..355148 | TCONS_00018381-exon-sc0000297-1510915933:355084..355148 | Clytia hemisphaerica | exon |
| TCONS_00018381-exon-sc0000297-1575043694:355084..355148 | TCONS_00018381-exon-sc0000297-1575043694:355084..355148 | Clytia hemisphaerica | exon |
| TCONS_00018381-exon-sc0000297-1491911889:356864..357727 | TCONS_00018381-exon-sc0000297-1491911889:356864..357727 | Clytia hemisphaerica | exon |
| TCONS_00018381-exon-sc0000297-1510915933:356864..357727 | TCONS_00018381-exon-sc0000297-1510915933:356864..357727 | Clytia hemisphaerica | exon |
| TCONS_00018381-exon-sc0000297-1575043694:356864..357727 | TCONS_00018381-exon-sc0000297-1575043694:356864..357727 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000297 | supercontig | sc0000297:353579..357727 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
|
