TCONS_00017942 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017942
Unique NameTCONS_00017942
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1015

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017942 ID=TCONS_00017942|Name=TCONS_00017942|organism=Clytia hemisphaerica|type=transcript|length=1015bp
CGCCGAATTGGATGTGCGCAAAAAATCTGATCCATTAAAAAAGGTTTACA
GGGCGTCTCATTTCTTACAACCTACCGACGAAGGCGACATATGTTTTATG
AAAGAATGGAACACTCTGCGTGAGGGCGTTACGATAAACTTATTGACGCc
catcaaaaatcaatttcgCTGGATGAAATTCTTAGTCAAAATGTTGGAAG
AAACTATTTCAAAAGCTCATGAAACAAATGTGAACTTAATACTGGTTGAT
TACAACAGTACTGACGGTGACTACGAATCCATTCTCAAGAAGAGTAAATT
GAATTATACCTATCTCAATCCAGTCAAGATAGAACAGCAACAGATGAAAT
TCAGTAAAGTCAGAGCATTGAATTATAATATCAAAAGTGTGAAAGATTCA
AATAGTATTATATTTGTTCTGGACCTTCATTTGATATTACCTTCTAATAT
GTTCGATCGGATAAGAAAATTGACGATACAAGGACGAACAGCGTACAGTC
CTGTTTTACTTAAAGAGGCTTGTGGAGAGCATCAAGAATATACAAATCTA
ACGGATAGTACTGAATGGCTTGATCTTGGTACCGGAATGATATCATTGTA
CAAGTCCGATTGGGAGGAGATAGGAGGTTTTAACGAGGAGCTGTTCAAAG
ACAAATGGGGCGGAGAAGATTGGGAAGTAATGGATCGTATGGTGCAAAAA
GGAATATACATCATTCATCAGCGGATGTCACGTTTTTATCACATACACCA
CAAGCGGAAAGGAATGTGGCAAAAGCGTCGCAAGTGAAACGCTTTACGAA
CACACACACCACAATCAATATTTTTCCATTTCGTTTTTGTAGCTTTTTGA
TTAATTATAGCaaaaacaattaacaaaattgatagCATCACAACACGTTT
CACGTAGTTTTACCGTTTCATTGTTGCAACAATACATATCTAGGAAACGG
ACGTTTACGAGAagtattttcatttcataattttttttcatctgaatttt
tttttcttgattagN
Run BLAST on NCBI

protein sequence of TCONS_00017942-protein

>TCONS_00017942-protein ID=TCONS_00017942-protein|Name=TCONS_00017942-protein|organism=Clytia hemisphaerica|type=polypeptide|length=261bp
AELDVRKKSDPLKKVYRASHFLQPTDEGDICFMKEWNTLREGVTINLLTP
IKNQFRWMKFLVKMLEETISKAHETNVNLILVDYNSTDGDYESILKKSKL
NYTYLNPVKIEQQQMKFSKVRALNYNIKSVKDSNSIIFVLDLHLILPSNM
FDRIRKLTIQGRTAYSPVLLKEACGEHQEYTNLTDSTEWLDLGTGMISLY
KSDWEEIGGFNEELFKDKWGGEDWEVMDRMVQKGIYIIHQRMSRFYHIHH
KRKGMWQKRRK
Run BLAST on NCBI

transcript from alignment at sc0000279:187554..192475-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017942 ID=TCONS_00017942|Name=TCONS_00017942|organism=Clytia hemisphaerica|type=transcript|length=4922bp|location=Sequence derived from alignment at sc0000279:187554..192475- (Clytia hemisphaerica)
CGCCGAATTGGATGTGCGCAAAAAATCTGATCCATTAAAAAAGGTTTACA
GGGCGTCTCATTTCTTACAACCTACCGACGAAGGCGACATATGTTTTATG
AAAGAATGGAACACTCTGCGTGAGGGCGTTACGATAAACTTATTGACGCC
CATCAAAAATCAATTTCGCTGGATGAAATTCTTAGTCAAAATGTTGGAAG
AAACTATTTCAAAAGCTCATGAAACAAATGTAAGTTAAAAACTGCTACAT
TTTTGATGAAATAAAAACCATAGTATCAGTAATCCGGTAAGTATCCTTTA
GCTAAATGGGAATAAAATGGAAGTTGTCAATCTGTGTTGTTCATAGTTTA
GAAAATCAGTTATTCCATTGGAGATGAGAATTTTTTGATGGGGATGTTAG
ATGGAGATGTGACAGATGATTGTAAAAGCATTTTATTGTCTAGCCTATGA
TAATAAATCAGGAATTTTGGGTAGTCTTTTTCGAAATCTTAAGTACGGGC
GAGATACCCTGAGTATCAGAGGTTAGTTTTTCAAAGAAAGTAGTAACCTC
TGAAGACAAATATTAGAAATTTTATCGCGCATGTGTCAATCTAATCACTG
TAGAAAAAATCAAAGATGAAGAGCAAATATTACCATATTAATGTCTAGCA
GACTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCATGGTTACTTTTGTCTTCGCTGATTGCGCGATGAATAGAATCTCGA
TTCGTCGGCACAGCGTAAATATATGATTTTGAGCTGTGCTTTTCACGGTA
CGGGCGAGAATTATGTGGTTTCAGCCGTTCAACTTTCATTTGGCTTTTCG
ATTTTGCAGGAATCTAGTGGCTTTCAGGCTATATCATCAGCGTTATTAAA
GCTTGAGCTTGTGTATCCCCGAAATCCTATGGTCTTAAGACGAAAGTCTA
TCGTTAAAACTCTATTTTTGACCCAAGTCAATGCACTTCAAAATCGTTTG
TGTTTTTCTTTAATTTGACTTTGAATTCCCCTTTTTAACATAAATATTCC
GACTTTGATTGTAGGATCATGGTGGTGAAATAAAATAAATCATCTCGTTA
TTGTGTCGATGCATGTAATTAGTAATAGGCATTATGATGATGTAATAGTA
TCTTTCTATCTCCACAAAAGAATATCTTGTTCCATCATGGTATTTTTAAA
TTATCGATGATAATTAAGATAATTATCAATTAACTCGTTTTTATTGTATG
TCATATATGATGGGCCACCGCAGTTATCCCATTCGTTTTCAGGTGAACTT
AATACTGGTTGATTACAACAGTACTGACGGTGACTACGAATCCATTCTCA
AGAAGAGTAAATTGAATTATACCTATCTCAATCCAGTCAAGATAGAACAG
CAACAGATGAAATTCAGTAAAGTCAGAGCATTGAATTATAATATCAAAAG
TGTGAAAGATTCAAATAGTATTATATTTGTTCTGGACCTTCATTTGATAT
TACCTTCTAATATGTTCGATCGGATAAGAAAAGTAAGTTCTTTGACCCAC
TACAATATCGGTCAAAATAGTATATTGAGAGTTTATCGGTCAACCAGTAT
ATTGAGAGTTTTGGTTAATTCCTCGTTTTCAGAAGCTCGGGCGAGAAAGT
GACTTTTAGGCTATTTCTTAGCTTTAATAGAATATTTCAATTTGGTTGGG
GTTTATAGACTTCCAGGCAATATTTTAAGCCCTATTGGGCCGTTCTTGTA
CTTTTGGATATCCTCAGATTCTAAAGTCTTAAGTCTTATGTTACAACTCA
GAGTTAAAACTCTACCCTTCCAACCCAAGTTAGAGCGATCGATTGTGGCT
ATAAGATTTTGTGGGAATTTCCATTTCCATGTTATGACCGGTATTGTACC
CACTAGTCCATATTAGTTACCAAAACGAACATCAGTTTTTTCAGATGCCT
CCTAGGTAATTTTGGTTTCCAAAAATTCTCATCTCTCAATATTTATTCCA
ATCTTCAGTTTAGGCTGCTTGCATCCTCTAATGGAATACGATTGAATTTT
GCATAGTTCTGCGATTCTTCTATTGGAAATTTTAAAATTAGAGTTCCGTT
GCTTTTATAAAGAATTAGATAGATAGATATGCCCTNGAAATTAGAGTTTC
GTTGCTTTTATAAAGAATTAGATAGATAGATAGATAGATAGATAGATAGA
TAGATAGATAGATATGCCCTCCGATGCATCGGAATGGGTCCTACCCACGG
TGGAGTAAGAATCACAGCGCAAGCAGACACTCGAACTACACGGGAGAACG
GATGTCCTCGCATATGTAGAACCTCCTGAGTATCACGGCACACCACAATG
TCTGAAATATCTACCCATACTCTTGTATCAGAGTTATGGTACCCAATTCC
CCTCACATGGCATGGGTTGACCCGGGCGAAGGAGCATTCACTTGTCAAGT
GAATCGTGGTGCCACGGTGGGTATCGAACTCGAGCCTCCTGGACAGAAGT
CAAGCACGATAACCACTACACCACTACGCCTTTTATAAAGAATTAGCATT
AACATAGTGGTTAGTGTCACGAAGTTTCGATGGTGAAATTGATCACGTGA
AGGAATTTTGGAACTTTTATAAATTCCTAATCTTTATGAATTTTCCTTTT
TTCCATTCAGTTGACGATACAAGGACGAACAGCGTACAGTCCTGTTTTAC
TTAAAGAGGCTTGTGGAGAGCATCAAGAATATACAAATCTAACGGATAGT
ACTGAATGGCTTGATCTTGGTACCGGAATGATATCATTGTACAAGTCCGA
TTGGGAGGAGATAGGAGGTATGAAAAACCCAATGAGAGTACATTGCAGGC
CCAGCGAAAGTGGGGAGACTGAGGAGACTTTAGCCTCCCCACTTTGAGCA
AATGAGATCTTTTTCTCGGATTCCTAGCAAATTTTATCCCATTTTGAGTC
TTCAGCATCCCCACTCTCATGGTTGTTCCGTCGGGCCTGATCGACTATCT
TTATTTATAGTTACTAGCCATTGGGTTGCTAAAACGCAAACTGGTGCCCG
TGTATCACAAGCTTTATTCGTGTTACTAAAGGACACCAGAGAACATCATC
TGCCGTTTTCAGAAAGCATCAAAAAGCCAATATAATACACAGGGAACGAG
GTGGTCCCAAACGGTAGTCTGAATTGCTAGAGGATGAGCAGAAGCCTACA
CAAACGGGGGCTTATTTTGTCATATCACAAAAGCTCTCTCCTCTAGCAGC
TTTTTATAGCTCTAGTTAAAAGAAACATTGAGTTTCTACGTCACAAAAAG
AAGTCTGATCCGTTATTCTGAAACATGATTCTCCAATGTTACCTTTGAAA
TGCTGCTCGTGCGTCTAAGAATACATTAATAGCATTTTTCTTCTTACACA
CAGGCAGACTTTTGCTTTGTTGGGGTAGGCTAGCAAATAACAAAATTCTG
ACCAAGGAATAATTTTCATGTCTTTGATTGGCCGCGTATTACAATTGTTG
ACCAGTTTACGTATAAAACCATTTACTATATTCAATTATGGACAAAACAT
TTGAGACAAAGGGAATTTCCCGGTGAAAATTTAAACACCACAAATGATTT
TTAAGGTCTTAAGGGCTCTGGTCATAGCGAAAAATCAATTTCAGATTTTA
AAGGAAAGATACTTCCATAAAAATTTTTCAATATTGTATTTTTAGATACT
AAATAGATACATCACCTGAACCAAAAAAAATTCCAAAATGTTTGATTTTT
ACCGAGATTAGGGCTTTGAAAGGTGAAATACTCTTCTNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGAAAAACT
CTTCGTTTTCTTCTTCATTTAATTTTTTCATTTCAATTTTTCGATTTTTA
AATTCTAAAAAGGTAGGTTTAACAGGACATATAAAAAAAATTATACATTA
ATGTTTTTAAAATGCAGAAATTGCCATTTAAGTTGGTGTAAAATCGAAAA
ATTGTCCAGAGCCCTTAAACTACAGTTTAAATACACTTTCGACCATGATT
GTAGTAACAAAACATATTTTCTCGATTGATTAGGTTTTAACGAGGAGCTG
TTCAAAGACAAATGGGGCGGAGAAGATTGGGAAGTAATGGATCGTATGGT
GCAAAAAGGAATATACATCATTCATCAGCGGATGTCACGTTTTTATCACA
TACACCACAAGCGGAAAGGAATGTGGCAAAAGCGTCGCAAGTGAAACGCT
TTACGAACACACACACCACAATCAATATTTTTCCATTTCGTTTTTGTAGC
TTTTTGATTAATTATAGCAAAAACAATTAACAAAATTGATAGCATCACAA
CACGTTTCACGTAGTTTTACCGTTTCATTGTTGCAACAATACATATCTAG
GAAACGGACGTTTACGAGAAGTATTTTCATTTCATAATTTTTTTTCATCT
GAATTTTTTTTTCTTGATTAGN

Coding sequence (CDS) from alignment at sc0000279:187554..192475-

>TCONS_00017942 ID=TCONS_00017942|Name=TCONS_00017942|organism=Clytia hemisphaerica|type=CDS|length=3144bp|location=Sequence derived from alignment at sc0000279:187554..192475- (Clytia hemisphaerica)
GTTTTAACGAGGAGCTGTTCAAAGACAAATGGGGCGGAGAAGATTGGGAA
GTAATGGATCGTATGGTGCAAAAAGGAATATACATCATTCATCAGCGGAT
GTCACGTTTTTATCACATACACCACAAGCGGAAAGGAATGTGGCAAAAGC
GTCGCAAGTGATTGACGATACAAGGACGAACAGCGTACAGTCCTGTTTTA
CTTAAAGAGGCTTGTGGAGAGCATCAAGAATATACAAATCTAACGGATAG
TACTGAATGGCTTGATCTTGGTACCGGAATGATATCATTGTACAAGTCCG
ATTGGGAGGAGATAGGAGGTGAACTTAATACTGGTTGATTACAACAGTAC
TGACGGTGACTACGAATCCATTCTCAAGAAGAGTAAATTGAATTATACCT
ATCTCAATCCAGTCAAGATAGAACAGCAACAGATGAAATTCAGTAAAGTC
AGAGCATTGAATTATAATATCAAAAGTGTGAAAGATTCAAATAGTATTAT
ATTTGTTCTGGACCTTCATTTGATATTACCTTCTAATATGTTCGATCGGA
TAAGAAAAGCCGAATTGGATGTGCGCAAAAAATCTGATCCATTAAAAAAG
GTTTACAGGGCGTCTCATTTCTTACAACCTACCGACGAAGGCGACATATG
TTTTATGAAAGAATGGAACACTCTGCGTGAGGGCGTTACGATAAACTTAT
TGACGCCCATCAAAAATCAATTTCGCTGGATGAAATTCTTAGTCAAAATG
TTGGAAGAAACTATTTCAAAAGCTCATGAAACAAATGTTTTAACGAGGAG
CTGTTCAAAGACAAATGGGGCGGAGAAGATTGGGAAGTAATGGATCGTAT
GGTGCAAAAAGGAATATACATCATTCATCAGCGGATGTCACGTTTTTATC
ACATACACCACAAGCGGAAAGGAATGTGGCAAAAGCGTCGCAAGTGATTG
ACGATACAAGGACGAACAGCGTACAGTCCTGTTTTACTTAAAGAGGCTTG
TGGAGAGCATCAAGAATATACAAATCTAACGGATAGTACTGAATGGCTTG
ATCTTGGTACCGGAATGATATCATTGTACAAGTCCGATTGGGAGGAGATA
GGAGGTGAACTTAATACTGGTTGATTACAACAGTACTGACGGTGACTACG
AATCCATTCTCAAGAAGAGTAAATTGAATTATACCTATCTCAATCCAGTC
AAGATAGAACAGCAACAGATGAAATTCAGTAAAGTCAGAGCATTGAATTA
TAATATCAAAAGTGTGAAAGATTCAAATAGTATTATATTTGTTCTGGACC
TTCATTTGATATTACCTTCTAATATGTTCGATCGGATAAGAAAAGCCGAA
TTGGATGTGCGCAAAAAATCTGATCCATTAAAAAAGGTTTACAGGGCGTC
TCATTTCTTACAACCTACCGACGAAGGCGACATATGTTTTATGAAAGAAT
GGAACACTCTGCGTGAGGGCGTTACGATAAACTTATTGACGCCCATCAAA
AATCAATTTCGCTGGATGAAATTCTTAGTCAAAATGTTGGAAGAAACTAT
TTCAAAAGCTCATGAAACAAATGTTTTAACGAGGAGCTGTTCAAAGACAA
ATGGGGCGGAGAAGATTGGGAAGTAATGGATCGTATGGTGCAAAAAGGAA
TATACATCATTCATCAGCGGATGTCACGTTTTTATCACATACACCACAAG
CGGAAAGGAATGTGGCAAAAGCGTCGCAAGTGATTGACGATACAAGGACG
AACAGCGTACAGTCCTGTTTTACTTAAAGAGGCTTGTGGAGAGCATCAAG
AATATACAAATCTAACGGATAGTACTGAATGGCTTGATCTTGGTACCGGA
ATGATATCATTGTACAAGTCCGATTGGGAGGAGATAGGAGGTGAACTTAA
TACTGGTTGATTACAACAGTACTGACGGTGACTACGAATCCATTCTCAAG
AAGAGTAAATTGAATTATACCTATCTCAATCCAGTCAAGATAGAACAGCA
ACAGATGAAATTCAGTAAAGTCAGAGCATTGAATTATAATATCAAAAGTG
TGAAAGATTCAAATAGTATTATATTTGTTCTGGACCTTCATTTGATATTA
CCTTCTAATATGTTCGATCGGATAAGAAAAGCCGAATTGGATGTGCGCAA
AAAATCTGATCCATTAAAAAAGGTTTACAGGGCGTCTCATTTCTTACAAC
CTACCGACGAAGGCGACATATGTTTTATGAAAGAATGGAACACTCTGCGT
GAGGGCGTTACGATAAACTTATTGACGCCCATCAAAAATCAATTTCGCTG
GATGAAATTCTTAGTCAAAATGTTGGAAGAAACTATTTCAAAAGCTCATG
AAACAAATGTTTTAACGAGGAGCTGTTCAAAGACAAATGGGGCGGAGAAG
ATTGGGAAGTAATGGATCGTATGGTGCAAAAAGGAATATACATCATTCAT
CAGCGGATGTCACGTTTTTATCACATACACCACAAGCGGAAAGGAATGTG
GCAAAAGCGTCGCAAGTGATTGACGATACAAGGACGAACAGCGTACAGTC
CTGTTTTACTTAAAGAGGCTTGTGGAGAGCATCAAGAATATACAAATCTA
ACGGATAGTACTGAATGGCTTGATCTTGGTACCGGAATGATATCATTGTA
CAAGTCCGATTGGGAGGAGATAGGAGGTGAACTTAATACTGGTTGATTAC
AACAGTACTGACGGTGACTACGAATCCATTCTCAAGAAGAGTAAATTGAA
TTATACCTATCTCAATCCAGTCAAGATAGAACAGCAACAGATGAAATTCA
GTAAAGTCAGAGCATTGAATTATAATATCAAAAGTGTGAAAGATTCAAAT
AGTATTATATTTGTTCTGGACCTTCATTTGATATTACCTTCTAATATGTT
CGATCGGATAAGAAAAGCCGAATTGGATGTGCGCAAAAAATCTGATCCAT
TAAAAAAGGTTTACAGGGCGTCTCATTTCTTACAACCTACCGACGAAGGC
GACATATGTTTTATGAAAGAATGGAACACTCTGCGTGAGGGCGTTACGAT
AAACTTATTGACGCCCATCAAAAATCAATTTCGCTGGATGAAATTCTTAG
TCAAAATGTTGGAAGAAACTATTTCAAAAGCTCATGAAACAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010056XLOC_010056Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017942-exon-sc0000279-1575043694:192247..192475TCONS_00017942-exon-sc0000279-1575043694:192247..192475Clytia hemisphaericaexon
TCONS_00017942-exon-sc0000279-1575043694:190494..190733TCONS_00017942-exon-sc0000279-1575043694:190494..190733Clytia hemisphaericaexon
TCONS_00017942-exon-sc0000279-1575043694:189209..189365TCONS_00017942-exon-sc0000279-1575043694:189209..189365Clytia hemisphaericaexon
TCONS_00017942-exon-sc0000279-1575043694:187554..187942TCONS_00017942-exon-sc0000279-1575043694:187554..187942Clytia hemisphaericaexon
TCONS_00017942-exon-sc0000279-1510915933:192247..192475TCONS_00017942-exon-sc0000279-1510915933:192247..192475Clytia hemisphaericaexon
TCONS_00017942-exon-sc0000279-1510915933:190494..190733TCONS_00017942-exon-sc0000279-1510915933:190494..190733Clytia hemisphaericaexon
TCONS_00017942-exon-sc0000279-1510915933:189209..189365TCONS_00017942-exon-sc0000279-1510915933:189209..189365Clytia hemisphaericaexon
TCONS_00017942-exon-sc0000279-1510915933:187554..187942TCONS_00017942-exon-sc0000279-1510915933:187554..187942Clytia hemisphaericaexon
TCONS_00017942-exon-sc0000279-1491911889:192247..192475TCONS_00017942-exon-sc0000279-1491911889:192247..192475Clytia hemisphaericaexon
TCONS_00017942-exon-sc0000279-1491911889:190494..190733TCONS_00017942-exon-sc0000279-1491911889:190494..190733Clytia hemisphaericaexon
TCONS_00017942-exon-sc0000279-1491911889:189209..189365TCONS_00017942-exon-sc0000279-1491911889:189209..189365Clytia hemisphaericaexon
TCONS_00017942-exon-sc0000279-1491911889:187554..187942TCONS_00017942-exon-sc0000279-1491911889:187554..187942Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017942-proteinTCONS_00017942-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000279supercontigsc0000279:187554..192475 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.73609	0.0791793	0.262454	0.321614	0.0891903	0.107968	1.59325	0.395536	0.217788	0.467441	0.264347	0.520093	2.23271	3.69814	0.471086	0.186826	0.151407	0.199904	0.439292	0.564217	0.89535	0.841904	0	0.049776
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029044Nucleotide-diphossugar_trans
IPR008428Chond_GalNAc
Vocabulary: Molecular Function
TermDefinition
GO:0008376acetylgalactosaminyltransferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0032580Golgi cisterna membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0032580 Golgi cisterna membrane
molecular_function GO:0008376 acetylgalactosaminyltransferase activity
Blast
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BLAST of TCONS_00017942 vs. Swiss-Prot (Human)
Match: B4GN4 (N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1 OS=Homo sapiens GN=B4GALNT4 PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 4.561e-46
Identity = 76/223 (34.08%), Postives = 133/223 (59.64%), Query Frame = 2 
Query:  119 REGVTINLLTPIKNQFRWMKFLVKMLEETISKAHETNVNLILVDYNSTDGDYESILKKSKL-NYTYLNPVKIEQQQMKFSKVRALNYNIKSVKDSNSIIFVLDLHLILPSNMFDRIRKLTIQGRTAYSPVLLKEACGEHQEYTNLTDSTEWLDLGTGMISLYKSDWEEIGGFNEELFKDKWGGEDWEVMDRMVQKGIYIIHQRMSRFYHIHHKRKGMWQKRRK 784
            R+ V ++ + P+KNQ RW+   +  +    ++  ++  +++LVD+ S D D E  L+ ++L  Y YL      ++   F +   L   + +V+D++SI+F+ DLH+  P N+ D IRK  ++GR A++PV+++ +CG             W   G G+  +YKSD++ +GG N E F+D+WGGEDWE++DR++Q G+ +   R+  FYH +H ++GMW  R +
Sbjct:  819 RQDVMVHFIVPVKNQARWVAQFLADMAALHARTGDSRFSVVLVDFESEDMDVERALRAARLPRYQYL------RRTGNFERSAGLQAGVDAVEDASSIVFLCDLHIHFPPNILDGIRKHCVEGRLAFAPVVMRLSCGSSPR----DPHGYWEVNGFGLFGIYKSDFDRVGGMNTEEFRDQWGGEDWELLDRVLQAGLEVERLRLRNFYHHYHSKRGMWSVRSR 1031
The following BLAST results are available for this feature:
BLAST of TCONS_00017942 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
B4GN44.561e-4634.08N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-a... [more]
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