TCONS_00017942-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00017942-protein
Unique NameTCONS_00017942-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length261

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00017942-protein ID=TCONS_00017942-protein|Name=TCONS_00017942-protein|organism=Clytia hemisphaerica|type=polypeptide|length=261bp
AELDVRKKSDPLKKVYRASHFLQPTDEGDICFMKEWNTLREGVTINLLTP
IKNQFRWMKFLVKMLEETISKAHETNVNLILVDYNSTDGDYESILKKSKL
NYTYLNPVKIEQQQMKFSKVRALNYNIKSVKDSNSIIFVLDLHLILPSNM
FDRIRKLTIQGRTAYSPVLLKEACGEHQEYTNLTDSTEWLDLGTGMISLY
KSDWEEIGGFNEELFKDKWGGEDWEVMDRMVQKGIYIIHQRMSRFYHIHH
KRKGMWQKRRK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010056XLOC_010056Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00017942TCONS_00017942Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029044Nucleotide-diphossugar_trans
IPR008428Chond_GalNAc
Vocabulary: Molecular Function
TermDefinition
GO:0008376acetylgalactosaminyltransferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0032580Golgi cisterna membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0032580 Golgi cisterna membrane
molecular_function GO:0008376 acetylgalactosaminyltransferase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029044Nucleotide-diphospho-sugar transferasesGENE3D3.90.550.10coord: 35..261
e-value: 7.6E-21
score: 74.1
IPR029044Nucleotide-diphospho-sugar transferasesSUPERFAMILY53448Nucleotide-diphospho-sugar transferasescoord: 112..259
coord: 44..84
IPR008428Chondroitin N-acetylgalactosaminyltransferasePFAMPF05679CHGNcoord: 14..253
e-value: 1.2E-22
score: 80.3
NoneNo IPR availableCDDcd00761Glyco_tranf_GTA_typecoord: 63..239
e-value: 3.53353E-5
score: 40.5674

Blast
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BLAST of TCONS_00017942-protein vs. Swiss-Prot (Human)
Match: B4GN4 (N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1 OS=Homo sapiens GN=B4GALNT4 PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 8.114e-48
Identity = 76/223 (34.08%), Postives = 133/223 (59.64%), Query Frame = 0 
Query:   40 REGVTINLLTPIKNQFRWMKFLVKMLEETISKAHETNVNLILVDYNSTDGDYESILKKSKL-NYTYLNPVKIEQQQMKFSKVRALNYNIKSVKDSNSIIFVLDLHLILPSNMFDRIRKLTIQGRTAYSPVLLKEACGEHQEYTNLTDSTEWLDLGTGMISLYKSDWEEIGGFNEELFKDKWGGEDWEVMDRMVQKGIYIIHQRMSRFYHIHHKRKGMWQKRRK 261
            R+ V ++ + P+KNQ RW+   +  +    ++  ++  +++LVD+ S D D E  L+ ++L  Y YL      ++   F +   L   + +V+D++SI+F+ DLH+  P N+ D IRK  ++GR A++PV+++ +CG             W   G G+  +YKSD++ +GG N E F+D+WGGEDWE++DR++Q G+ +   R+  FYH +H ++GMW  R +
Sbjct:  819 RQDVMVHFIVPVKNQARWVAQFLADMAALHARTGDSRFSVVLVDFESEDMDVERALRAARLPRYQYL------RRTGNFERSAGLQAGVDAVEDASSIVFLCDLHIHFPPNILDGIRKHCVEGRLAFAPVVMRLSCGSSPR----DPHGYWEVNGFGLFGIYKSDFDRVGGMNTEEFRDQWGGEDWELLDRVLQAGLEVERLRLRNFYHHYHSKRGMWSVRSR 1031
The following BLAST results are available for this feature:
BLAST of TCONS_00017942-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
B4GN48.114e-4834.08N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-a... [more]
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