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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017592 ID=TCONS_00017592|Name=TCONS_00017592|organism=Clytia hemisphaerica|type=transcript|length=1753bp
TTGATTTGAATGCATCAGAAGATCAAAGATGTATATGCATCAAAGGTCAT
ATTTCGAGAATGTTATTGCATGGTATTAAAAGAGGATCGGAATAAACTTG
TTCTAAGGGGCATATTGTGTATTTGTTTTGTATAGACGTCGTTGACTTTT
GATGTGTGTTGTGTGGCATTTTTAAGATCACGGATAGAAATACCATCAGC
CTCGCGCTTATCTTGCGTAAAGCGTATGGATTACAGCAATGGATTTTGAA
TTTCATGTATCGGGTCTGTTACGGAAAGATTTTCGTCTTGCTATTCAATG
ATGGAAAAAACAACAGGACATATCATTTCAACGTTgctttgtatattttt
ttccttattgGATAATTACACAGACATTGCACAGAGTGTGATCCACTTCT
GCAACCACAAGAGATGGTATGGTCATCTCACCATGGCGCTTGTTGTGGCG
CCCGCCCTCATCAATAGTGTGTATACCGCCTGTATGTTTTACTGTAATAA
AGGACGGATTGTACATAACGTTAAGTTCCCGTATCCAAAAGTTGTTTACG
TGTTATGTTTTCTACTTCACGGTCATTACGCACGTCAAATCATTTGGATA
TACGCACTACGTACGAAAGCGCTTAACGAAAGACTGGCCAAAGAGCTTGT
TTCAACTGGACGAGATATGAGTTTTTATTTGGAGATATTTCTTGAATCGA
TGCCTCAAATGATGCTACAGTTATATATTATGACAGTCATTTACGGAGAG
TTGCGTTTAATGGGATGCATTACGTTGTTTACGTCTTTCGTTGCGACGTC
TTGGGGATTATTATTACTTTATAACGACGGCAAAGAACgatttttcgctt
ttttgatCAACGGATTCTGGCTTGCATCACGTGTTTTATCACTAGCCGTA
TTTTCGAGTATCCGACGATTTGCTATATTCGCTATTTTGTCTGTGCATTT
CCTATTCGTCCTTCCGTTATGGTTTTACGAAAGCAAGAGACATCCGTTAG
CGGAAGAACGGCTAACACGACGCGGGTTTTGTCATACGTTTGTTTCGGAC
TTCTTTTTCGCTATCTTGTACGCCGTATGTAACACCGTCACGCCGATGAT
CACACGTTATTACTTCCCGTTGTCGTTCATGTTTATTATAGAGAACGTCG
TATGTGCCGTAACCGTTTATTACTTCGGTGAAGTCAAACGTATCGTCAAT
GGTGAAAAGGCTTATATCAAATTCAAGAACTGGCCCTACGCGTCAACTTT
CATGGTAGGATTTTATACGGTCACGATAATTGCGTTTTTATTAACACTTA
CAGTTCAATTAATAAAATGTTCGAATCGAATTGATAAAACATTTATGCAA
TCGAACATTCGAAAGATCATCAGTAAAATACGACCGATTGAAGCGATTAA
GAAATCAGTTTTCAGAAGACGTGGGACGAATAACGAAGCCGGTTTGAGAA
CAATCAGATCTGAAAGTTGAAAATGGATTTTTCTGTATATATTACGAAAG
TATACCTATTTTATGGTCTGACTAGATtgtggtaaaataaaaattgtaaa
tatgatctttgtttataaataaataatgtattaaaaaataatgaattaat
tgTGATAAGCtaaattattttagtttctttCTTCGGTTTTTCTTCGGGCT
AAAGGTTTTTTACCacctattttattttgaaaaaaacatagCTCGAAAAC
TGAAGAAATCGTAAGCCTGGACCAAATGTCGTTATAAGGGTCCACCCAAT
TTA Run BLAST on NCBI protein sequence of TCONS_00017592-protein >TCONS_00017592-protein ID=TCONS_00017592-protein|Name=TCONS_00017592-protein|organism=Clytia hemisphaerica|type=polypeptide|length=390bp
MMEKTTGHIISTLLCIFFSLLDNYTDIAQSVIHFCNHKRWYGHLTMALVV
APALINSVYTACMFYCNKGRIVHNVKFPYPKVVYVLCFLLHGHYARQIIW
IYALRTKALNERLAKELVSTGRDMSFYLEIFLESMPQMMLQLYIMTVIYG
ELRLMGCITLFTSFVATSWGLLLLYNDGKERFFAFLINGFWLASRVLSLA
VFSSIRRFAIFAILSVHFLFVLPLWFYESKRHPLAEERLTRRGFCHTFVS
DFFFAILYAVCNTVTPMITRYYFPLSFMFIIENVVCAVTVYYFGEVKRIV
NGEKAYIKFKNWPYASTFMVGFYTVTIIAFLLTLTVQLIKCSNRIDKTFM
QSNIRKIISKIRPIEAIKKSVFRRRGTNNEAGLRTIRSES Run BLAST on NCBI transcript from alignment at sc0000271:118226..122668+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017592 ID=TCONS_00017592|Name=TCONS_00017592|organism=Clytia hemisphaerica|type=transcript|length=4443bp|location=Sequence derived from alignment at sc0000271:118226..122668+ (Clytia hemisphaerica)
TTGATTTGAATGCATCAGAAGATCAAAGATGTATATGCATCAAAGGTCAT
ATTTCGAGAATGTTATTGCATGGTATTAAAAGAGGATCGGAATAAACTTG
TTCTAAGGGGCATATTGTGTATTTGTTTTGTATAGACGTCGTTGACTTTT
GATGTGTGTTGTGTGGCATTTTTAAGATCACGGATAGAAATACCATCAGC
CTCGCGCTTATCTTGCGTAAAGCGTATGGATTACAGCAATGGATTTTGAA
TTTCATGTATCGGGTCTGTTACGGAAAGATTTTCGTCTTGCTATTCAAGT
ACGTCTTTTTAAATTGTTTGCCGATTTTCTAACCCTTTAGCCCTTATTTA
CTGGCTTTACTTAGGCCTTCCCTCTGACAAGAAAATACATGTCTTGTTGT
CTACGGGGGCACCCTGGAGACTTTAAACGTGGTAGATTTGTTTAACATTG
GGATGGGCTTTTTAACAAAACCATAtttgtcgaaaatttcgccttatATT
TAAACTGTATAGGAATAAACAGGTAGTTGAGATTGAAGCTAATTTAGAAT
CTACTACTACAAAGAAAAGATTGAGAGTTTTTGGTCATAAATTAAGTACG
GGATATATTGGTTGACACAGCCAGATAGATATTTACTTTATCTCACTTTC
AAGAAATCCATAtacaaattcaataaaattttcatgGATGCGACTCGAGT
CAGGAACTCATTTACCAAGTTGCtatagattttctttcttgtaAGGTTGC
ATcaataaggaaaaaaatatccaacACTCGTGTTTACTTTGCATGATGGT
ATGTAACTATCTGTTAAGAGTAATTTATTCAGGATAGACAGTCGAACGAG
AAGTTAACTTGACTCCCGAACGGTAAGATCTCCCGATTAGGTTTTGAAAA
TATCTCGGCACCCAAAAAGGAAGATAGAGAATTCTTCCTAATTCGGAAGA
TCTGCCGGTTTAGGAAGGTTTGATTTCTTCAAAACAGAAACGGGAAGTAA
gatagaaaaatgtaaacaatgaAACAGACTGCCCGATTCAGAAGAAAATC
CttctaaaattcagaaaatcgtCGCCTCAACATGAAGCACTTCATTTGTC
GTTTTTCAATCAAACAGTTAGTATGAACAATTTCAGgtgaaaaaatgttt
taggTATTTATTCTTTCGTTACCTTTCGTCAAATTTTATCCtctgatttt
tgattttcgtagcatgggattcttataaagtagactcttataagaaaaat
gaatatactcatattgtgcaccagcccttgtttacttcgtaagAACTAAt
gaccgaaaggtatattattgATTTGGGACATAATCAGTGTGAGAaaccaa
aaaaagaaaccatgagacacgcactttttttcttgtgttggtgggatgga
gcatgttgcattgcaccaacgcgaaaaaaacttctcgtgtctcCAAGCCT
TAAgtaagatgaaattttttttttaaataaaggaaAAGATACTAAAGTCG
AACTCAGTGCGGCgtgcacgttcgactatttcaAATGTAATTGATAATTG
AACTTTTAATGACTGGTTGTCTACTCTCACTCCGTTACTCACGTAATTTT
TTAGTTTCTATTGCCAATCGATTTGGAAAAGATGATCCGCCCGATGTATC
ACATGAAGTTAAGACTAATGATCTCTTCTTTGATTGGCTTCATCTATCAG
TGATTTTTATGGTGATCCTGAATTCAAATTAGTCCAGACCAGAGCCTCCC
ATACAAATGCTTCTTAAGACCTGCCCTCCCTTTGTTGATTAGCGTCTGAT
ATGTATCAAATGGTATTAAAGTCAGAACTTATTTCAAGCGCTCAATTAGC
AGTATTTTTATCAAAGTTGTGACTTTATAAATTAGCATTTTGAGAGAGGT
ACTAGTTTTTAATAGTGGTATGGTATTTTAAAATGACTTTATTAATTATC
ATTTTGAGAGAGTTTTCTAGCGATATCGAAACTGAATTCAAGTGGCTTAA
ACAAACTGTGGTTATGGGAAGTGTCATTTCAATGTACATTATACTGTTCT
TAAAAAGGAACTCTTTGTTGTTAGAAACTAAAAATATCCGAAACTCGTGG
TAGCAAACTCATCACTTAGTTATCTTATTTAATGTGAAAATTACTTATAA
TCAGTTTCAAATGATCTCTTATTAATTAACAagagttgatattttttttt
gcttgttgtCATGTTATGGTTTGTTCAAGATGAAGTCTTATGTTGACCAG
TTCGTAAAAATGAGGGCATGACTATGTATAATTTTTCAAACGGAATTCTT
TAAAGATGACTAATTTGTTGTGATTTGATAATCAGCGTTTCGtatacaca
cccctgtctcattagAGATTTAAAGATGCTGAGTTAAATCTCTGTGCTGG
ATATGGAAATTCTACTGCTGggatagactggagtcgtttataatgcgtgt
aatacagtagtataggcgttatatgataatacgattattgttactgGATT
TAGTTTGACTAAAATTGTTCctctattactttttgctttatttctactat
gtctgaattagtcgtctagctttcTAGACTACTGCTGGGATCGAGTAGGa
ttcaaaaatcttttgcaTGATTTTACGATCGATTACTTACCCGTTGACCG
ACCTGAACTTGTCGGCCTCCAAATGCGATTTTCcacattatattatattt
caatatagttttgagcgaccgtagtgcagtggtagagcatccggctatgg
gtcataccaaagattcccaaaatggtacttgatgcttctttgcttgatgc
ctctctgcttgatgctcagcaattaggagaaggatcaagggtacgTGGAG
ATCCAGGGAGAAatagtggcgccctcccctaccttcgggtagatagctat
caaaagaggagccttcgggtcacctccgactgcggtcgcagacttccTTA
CTTCAATAtagttttactttttcattGTTCATTTTCAGTGATGGAAAAAA
CAACAGGACATATCATTTCAACGTTgctttgtatatttttttccttattg
GATAATTACACAGACATTGCACAGAGTGTGATCCACTTCTGCAACCACAA
GAGATGGTATGGTCATCTCACCATGGCGCTTGTTGTGGCGCCCGCCCTCA
TCAATAGTGTGTATACCGCCTGTATGTTTTACTGTAATAAAGGACGGATT
GTACATAACGTTAAGTTCCCGTATCCAAAAGTTGTTTACGTGTTATGTTT
TCTACTTCACGGTCATTACGCACGTCAAATCATTTGGATATACGCACTAC
GTACGAAAGCGCTTAACGAAAGACTGGCCAAAGAGCTTGTTTCAACTGGA
CGAGATATGAGTTTTTATTTGGAGATATTTCTTGAATCGATGCCTCAAAT
GATGCTACAGTTATATATTATGACAGTCATTTACGGAGAGTTGCGTTTAA
TGGGATGCATTACGTTGTTTACGTCTTTCGTTGCGACGTCTTGGGGATTA
TTATTACTTTATAACGACGGCAAAGAACgatttttcgcttttttgatCAA
CGGATTCTGGCTTGCATCACGTGTTTTATCACTAGCCGTATTTTCGAGTA
TCCGACGATTTGCTATATTCGCTATTTTGTCTGTGCATTTCCTATTCGTC
CTTCCGTTATGGTTTTACGAAAGCAAGAGACATCCGTTAGCGGAAGAACG
GCTAACACGACGCGGGTTTTGTCATACGTTTGTTTCGGACTTCTTTTTCG
CTATCTTGTACGCCGTATGTAACACCGTCACGCCGATGATCACACGTTAT
TACTTCCCGTTGTCGTTCATGTTTATTATAGAGAACGTCGTATGTGCCGT
AACCGTTTATTACTTCGGTGAAGTCAAACGTATCGTCAATGGTGAAAAGG
CTTATATCAAATTCAAGAACTGGCCCTACGCGTCAACTTTCATGGTAGGA
TTTTATACGGTCACGATAATTGCGTTTTTATTAACACTTACAGTTCAATT
AATAAAATGTTCGAATCGAATTGATAAAACATTTATGCAATCGAACATTC
GAAAGATCATCAGTAAAATACGACCGATTGAAGCGATTAAGAAATCAGTT
TTCAGAAGACGTGGGACGAATAACGAAGCCGGTTTGAGAACAATCAGATC
TGAAAGTTGAAAATGGATTTTTCTGTATATATTACGAAAGTATACCTATT
TTATGGTCTGACTAGATtgtggtaaaataaaaattgtaaatatgatcttt
gtttataaataaataatgtattaaaaaataatgaattaattgTGATAAGC
taaattattttagtttctttCTTCGGTTTTTCTTCGGGCTAAAGGTTTTT
TACCacctattttattttgaaaaaaacatagCTCGAAAACTGAAGAAATC
GTAAGCCTGGACCAAATGTCGTTATAAGGGTCCACCCAATTTA Coding sequence (CDS) from alignment at sc0000271:118226..122668+ >TCONS_00017592 ID=TCONS_00017592|Name=TCONS_00017592|organism=Clytia hemisphaerica|type=CDS|length=2346bp|location=Sequence derived from alignment at sc0000271:118226..122668+ (Clytia hemisphaerica)
ATGATGGAAAAAACAACAGGACATATCATTTCAACGTTgctttgtatatt
tttttccttattgGATAATTACACAGACATTGCACAGAGTGTGATCCACT
TCTGCAACCACAAGAGATGGTATGGTCATCTCACCATGGCGCTTGTTGTG
GCGCCCGCCCTCATCAATAGTGTGTATACCGCCTGTATGTTTTACTGTAA
TAAAGGACGGATTGTACATAACGTTAAGTTCCCGTATCCAAAAGTTGTTT
ACGTGTTATGTTTTCTACTTCACGGTCATTACGCACGTCAAATCATTTGG
ATATACGCACTACGTACGAAAGCGCTTAACGAAAGACTGGCCAAAGAGCT
TGTTTCAACTGGACGAGATATGAGTTTTTATTTGGAGATATTTCTTGAAT
CGATGCCTCAAATGATGCTACAGTTATATATTATGACAGTCATTTACGGA
GAGTTGCGTTTAATGGGATGCATTACGTTGTTTACGTCTTTCGTTGCGAC
GTCTTGGGGATTATTATTACTTTATAACGACGGCAAAGAACgatttttcg
cttttttgatCAACGGATTCTGGCTTGCATCACGTGTTTTATCACTAGCC
GTATTTTCGAGTATCCGACGATTTGCTATATTCGCTATTTTGTCTGTGCA
TTTCCTATTCGTCCTTCCGTTATGGTTTTACGAAAGCAAGAGACATCCGT
TAGCGGAAGAACGGCTAACACGACGCGGGTTTTGTCATACGTTTGTTTCG
GACTTCTTTTTCGCTATCTTGTACGCCGTATGTAACACCGTCACGCCGAT
GATCACACGTTATTACTTCCCGTTGTCGTTCATGTTTATTATAGAGAACG
TCGTATGTGCCGTAACCGTTTATTACTTCGGTGAAGTCAAACGTATCGTC
AATGGTGAAAAGGCTTATATCAAATTCAAGAACTGGCCCTACGCGTCAAC
TTTCATGGTAGGATTTTATACGGTCACGATAATTGCGTTTTTATTAACAC
TTACAGTTCAATTAATAAAATGTTCGAATCGAATTGATAAAACATTTATG
CAATCGAACATTCGAAAGATCATCAGTAAAATACGACCGATTGAAGCGAT
TAAGAAATCAGTTTTCAGAAGACGTGGGACGAATAACGAAGCCGGTTTGA
GAACAATCAGATCTGAAAGTTGAATGATGGAAAAAACAACAGGACATATC
ATTTCAACGTTgctttgtatatttttttccttattgGATAATTACACAGA
CATTGCACAGAGTGTGATCCACTTCTGCAACCACAAGAGATGGTATGGTC
ATCTCACCATGGCGCTTGTTGTGGCGCCCGCCCTCATCAATAGTGTGTAT
ACCGCCTGTATGTTTTACTGTAATAAAGGACGGATTGTACATAACGTTAA
GTTCCCGTATCCAAAAGTTGTTTACGTGTTATGTTTTCTACTTCACGGTC
ATTACGCACGTCAAATCATTTGGATATACGCACTACGTACGAAAGCGCTT
AACGAAAGACTGGCCAAAGAGCTTGTTTCAACTGGACGAGATATGAGTTT
TTATTTGGAGATATTTCTTGAATCGATGCCTCAAATGATGCTACAGTTAT
ATATTATGACAGTCATTTACGGAGAGTTGCGTTTAATGGGATGCATTACG
TTGTTTACGTCTTTCGTTGCGACGTCTTGGGGATTATTATTACTTTATAA
CGACGGCAAAGAACgatttttcgcttttttgatCAACGGATTCTGGCTTG
CATCACGTGTTTTATCACTAGCCGTATTTTCGAGTATCCGACGATTTGCT
ATATTCGCTATTTTGTCTGTGCATTTCCTATTCGTCCTTCCGTTATGGTT
TTACGAAAGCAAGAGACATCCGTTAGCGGAAGAACGGCTAACACGACGCG
GGTTTTGTCATACGTTTGTTTCGGACTTCTTTTTCGCTATCTTGTACGCC
GTATGTAACACCGTCACGCCGATGATCACACGTTATTACTTCCCGTTGTC
GTTCATGTTTATTATAGAGAACGTCGTATGTGCCGTAACCGTTTATTACT
TCGGTGAAGTCAAACGTATCGTCAATGGTGAAAAGGCTTATATCAAATTC
AAGAACTGGCCCTACGCGTCAACTTTCATGGTAGGATTTTATACGGTCAC
GATAATTGCGTTTTTATTAACACTTACAGTTCAATTAATAAAATGTTCGA
ATCGAATTGATAAAACATTTATGCAATCGAACATTCGAAAGATCATCAGT
AAAATACGACCGATTGAAGCGATTAAGAAATCAGTTTTCAGAAGACGTGG
GACGAATAACGAAGCCGGTTTGAGAACAATCAGATCTGAAAGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017592-exon-sc0000271-1491911889:118226..118523 | TCONS_00017592-exon-sc0000271-1491911889:118226..118523 | Clytia hemisphaerica | exon |
| TCONS_00017592-exon-sc0000271-1510915933:118226..118523 | TCONS_00017592-exon-sc0000271-1510915933:118226..118523 | Clytia hemisphaerica | exon |
| TCONS_00017592-exon-sc0000271-1575043694:118226..118523 | TCONS_00017592-exon-sc0000271-1575043694:118226..118523 | Clytia hemisphaerica | exon |
| TCONS_00017592-exon-sc0000271-1491911889:121214..122668 | TCONS_00017592-exon-sc0000271-1491911889:121214..122668 | Clytia hemisphaerica | exon |
| TCONS_00017592-exon-sc0000271-1510915933:121214..122668 | TCONS_00017592-exon-sc0000271-1510915933:121214..122668 | Clytia hemisphaerica | exon |
| TCONS_00017592-exon-sc0000271-1575043694:121214..122668 | TCONS_00017592-exon-sc0000271-1575043694:121214..122668 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000271 | supercontig | sc0000271:118226..122668 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR018629 | XK-rel |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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