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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017119 ID=TCONS_00017119|Name=TCONS_00017119|organism=Clytia hemisphaerica|type=transcript|length=1644bpRun BLAST on NCBI protein sequence of TCONS_00017119-protein >TCONS_00017119-protein ID=TCONS_00017119-protein|Name=TCONS_00017119-protein|organism=Clytia hemisphaerica|type=polypeptide|length=328bp MANKRLNRVRGLPQENCAELAKHDVLLCKDVLTKNILELMNFGLDYNESKRun BLAST on NCBI transcript from alignment at sc0000259:181228..261652- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017119 ID=TCONS_00017119|Name=TCONS_00017119|organism=Clytia hemisphaerica|type=transcript|length=80425bp|location=Sequence derived from alignment at sc0000259:181228..261652- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000259:181228..261652- >TCONS_00017119 ID=TCONS_00017119|Name=TCONS_00017119|organism=Clytia hemisphaerica|type=CDS|length=8883bp|location=Sequence derived from alignment at sc0000259:181228..261652- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00017119 vs. Swiss-Prot (Human)
Match: RA51B (DNA repair protein RAD51 homolog 2 OS=Homo sapiens GN=RAD51B PE=1 SV=2) HSP 1 Score: 259.61 bits (662), Expect = 3.455e-80 Identity = 149/350 (42.57%), Postives = 214/350 (61.14%), Query Frame = 2
Query: 122 MANKRLNRVRGLPQENCAELAKHDVLLCKDVLTKNILELMNF-GLDYNESKIVFDLVSKSVAPNSSKVSDLLEKKQ----QWFLSTQLAKLDQCLHGGLTSGTITELTGPPGCGKTQFCMMLASLTIMSLLSTD--DLDSCVIYIDTENAFTAKRLLEISSCHIGENQTSHLDVKEIASNVVVFYESTFQEMLTRLESLETIIIERNVKLIIVDSIASLARKEFGGH---NLVTERNNMLMKEATLLKYFAERFNIPVLVTNQVTTSTSSEL-------------------SKDSCLIAALGNTWAHAVNTRLMIRNSNEDHSIRELLVAKSPLCPLSKFHYKIDASGIV 1084
M +K+L RV GL QE C L++H +L C+D L + LELM GL Y + +VS++ AP + ++ FLST L+ LD+ LHGG+ G++TE+TGPPGCGKTQFC+M ++I++ L T+ L+ V+YIDTE+AF+A+RL+EI+ + + +S V ++ E T E+L R+ESLE II + +KL+I+DS+AS+ RKEF NL ERN L +EA+ LKY AE F+IPV++TNQ+TT S L S SC+IAALGNTW+H+VNTRL+++ + + R++L+AKSPL P + F Y I G+V
Sbjct: 1 MGSKKLKRV-GLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM---MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNL-KERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDSER--RQILIAKSPLAPFTSFVYTIKEEGLV 343 The following BLAST results are available for this feature:
BLAST of TCONS_00017119 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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