TCONS_00017119-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00017119-protein
Unique NameTCONS_00017119-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length328

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00017119-protein ID=TCONS_00017119-protein|Name=TCONS_00017119-protein|organism=Clytia hemisphaerica|type=polypeptide|length=328bp
MANKRLNRVRGLPQENCAELAKHDVLLCKDVLTKNILELMNFGLDYNESK
IVFDLVSKSVAPNSSKVSDLLEKKQQWFLSTQLAKLDQCLHGGLTSGTIT
ELTGPPGCGKTQFCMMLASLTIMSLLSTDDLDSCVIYIDTENAFTAKRLL
EISSCHIGENQTSHLDVKEIASNVVVFYESTFQEMLTRLESLETIIIERN
VKLIIVDSIASLARKEFGGHNLVTERNNMLMKEATLLKYFAERFNIPVLV
TNQVTTSTSSELSKDSCLIAALGNTWAHAVNTRLMIRNSNEDHSIRELLV
AKSPLCPLSKFHYKIDASGIVQVDDLTI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009573XLOC_009573Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00017119TCONS_00017119Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003593AAA+_ATPase
IPR013632DNA_recomb/repair_Rad51_C
IPR016467DNA_recomb/repair_RecA-like
IPR020588RecA_ATP-bd
IPR033925Rad51_DMC1_RadA
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0008094DNA-dependent ATPase activity
GO:0005524ATP binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0008094 DNA-dependent ATPase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003593AAA+ ATPase domainSMARTSM00382AAA_5coord: 96..290
e-value: 1.3E-6
score: 38.0
IPR013632DNA recombination and repair protein Rad51-like, C-terminalPFAMPF08423Rad51coord: 70..322
e-value: 2.5E-45
score: 154.7
IPR016467DNA recombination and repair protein, RecA-likePIRSFPIRSF005856Rad51coord: 1..325
e-value: 5.6E-71
score: 237.1
NoneNo IPR availableGENE3D3.40.50.300coord: 78..327
e-value: 4.0E-41
score: 140.8
IPR020588DNA recombination and repair protein RecA-like, ATP-binding domainPROSITEPS50162RECA_2coord: 75..254
score: 43.501
IPR033925Rad51/DMC1/RadACDDcd01123Rad51_DMC1_radAcoord: 79..321
e-value: 3.188E-72
score: 224.77
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 79..323

Blast
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BLAST of TCONS_00017119-protein vs. Swiss-Prot (Human)
Match: RA51B (DNA repair protein RAD51 homolog 2 OS=Homo sapiens GN=RAD51B PE=1 SV=2)

HSP 1 Score: 259.61 bits (662), Expect = 2.259e-84
Identity = 149/350 (42.57%), Postives = 214/350 (61.14%), Query Frame = 0 
Query:    1 MANKRLNRVRGLPQENCAELAKHDVLLCKDVLTKNILELMNF-GLDYNESKIVFDLVSKSVAPNSSKVSDLLEKKQ----QWFLSTQLAKLDQCLHGGLTSGTITELTGPPGCGKTQFCMMLASLTIMSLLSTD--DLDSCVIYIDTENAFTAKRLLEISSCHIGENQTSHLDVKEIASNVVVFYESTFQEMLTRLESLETIIIERNVKLIIVDSIASLARKEFGGH---NLVTERNNMLMKEATLLKYFAERFNIPVLVTNQVTTSTSSEL-------------------SKDSCLIAALGNTWAHAVNTRLMIRNSNEDHSIRELLVAKSPLCPLSKFHYKIDASGIV 321
            M +K+L RV GL QE C  L++H +L C+D L  + LELM   GL Y     +  +VS++ AP       +  ++       FLST L+ LD+ LHGG+  G++TE+TGPPGCGKTQFC+M   ++I++ L T+   L+  V+YIDTE+AF+A+RL+EI+         +   +   +S V ++ E T  E+L R+ESLE  II + +KL+I+DS+AS+ RKEF      NL  ERN  L +EA+ LKY AE F+IPV++TNQ+TT  S  L                   S  SC+IAALGNTW+H+VNTRL+++  + +   R++L+AKSPL P + F Y I   G+V
Sbjct:    1 MGSKKLKRV-GLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM---MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNL-KERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDSER--RQILIAKSPLAPFTSFVYTIKEEGLV 343
The following BLAST results are available for this feature:
BLAST of TCONS_00017119-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RA51B2.259e-8442.57DNA repair protein RAD51 homolog 2 OS=Homo sapiens... [more]
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