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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017117 ID=TCONS_00017117|Name=TCONS_00017117|organism=Clytia hemisphaerica|type=transcript|length=3475bp
AACGTTAAATATAATATTgcaatcaattttcaaattcaaaagctTGTTGA
GAAATGTCTACCGCGTTAGTATCAGCATTCTACGACTTCAATGATGTTAT
TCAACAACAGagCAAGCAACGACCAGCCATGTTAGATCTGCGTCAGCGAC
CACTAGAACAACGAAAACCAAGTAACTTATTGATATCTCGACGACACTCA
ACGAATTCTACAAATTTGAATAGTTTGGCTTCACCATCATTCACCAAAAC
AAACCCGCTCTCACCATCTTCGAGCAGTTTCTTTCCAATGCCATCGTCAC
CTAAAGACCCCTTTTTGAACGGTTGTGGTTCAACCTTAGCATCTGCTCTC
AACATGCGGGAACGTGCTCAAAGTGCAAGCTTCCAAGAAGAACTCGACGC
ACAACACCGTAAACGTAGCGGTACAAACTCAAGCCGTTACAAGACAGAAC
TTTGTCGTCCATTCGAAGAAAATGGTACCTGTAAATATGGAGACAAGTGC
CAATTTGCACATGGCTATCACGAACTTCGTGGCTTAAACCGTCACCCAAA
ATACAAGACCGAATTTTGTCGTACTTATCACACTATCGGATTCTGTCCAT
ACGGTCCGCGTTGTCACTTCATTCATAATGATGAGGAGAAACGTTTGGCT
CAAGCAAGCACTGGCCGATCTGTTTCCATGTCCAGCATGGATTCAGCTCC
CTCCTCTCCAGTCATTGACTTCGCTCCTTCACCATTCAGCAACACACCAC
CTACCTCCCCTGGAGTTGGAGACGTCTTTGTTTTTGACGAACCAACTGCT
CAACAAAACCTTCCATCCATGAAATCATCCCTGGCGAGTATGTCAACCAT
TCCGGAGATATCATCTCACCAGTTTGTACCGAACCACATCACTCGTAGCA
TCTCAGTTTCATCAGCTCTTCCCTCCAAAACACCTTCACCACCTAACCTC
ACTATTTCAAGCTTAATCACTGAAGGCACACGGATCGAATCCAGACCAAA
CACTTTCCAACCCATTCAAATGAAATTGGACGAACGCAACATTTTGACTC
CATCTGATTCGGGATCATCCAACCCACCCTCTCCTACCGACTCTTTGGAT
GGCTCCAACCGACGTCGCTTGCCTGTTTTTGGACTCATGAAACAATAAAT
GGTATGTTGACACTTGAGTGTGTGAGAGAAAAGAGGAATTTTCCCTCTGA
AAACCAAAGTGTGAGAGCTAGATaagaaaaaacttaaattattaCTATAT
TATTAACtataaatacttttttttttggaaatatgtgTCTATTTTGTCCG
GTGTGTTATAACGAAAAAGCTTTTATGGTGATTGATACCCTTTTTACTTG
AGGTCTCTTATTGAGTGAAGTGAGCTAAGGAGCGTTGTGAGCAAAAAGGA
AAgttattttttctatattttttgtttttttctggacTTTAAGGATTTAT
AAAATGTatattttatcgaaaaatttttatatatatagtcttattattat
tattattattattactataGCTATGTTATTTAGTTTTCAAActagaaaaa
aaggtaaaagcatttttttttgatttgttatATTGTATAAGATATGGTAT
GACAATTTCTAtagcatttttttcaaactgtaaaTATGATTTTCAGCAAa
cacatccaaattttttttgttctagattttgttttatttgttcaaatttt
attCTGCCTTCTCTCGATAGTCTGGAAGCCCTTCATTTGAGCTGGTTATT
TTTTCCTGGATTTCTCATTCTGTCTAAATTGGATTGACTGGACTTTTTTT
CGAGAGTTGAAGGGTTTTCTTTGATCGTGTTTTTTAAAATCTTGGCGGAG
TTTTCTCATAGAAATTTTTCAACGAGAGAACTTTTTTGGACAGAGTATTT
TCTCTTCAGCCCAAACGtcttatttatatttatatatattatataatttt
ttgtttaaatttttgaaattggtcCCCTAGATTTagaaaaaagaaggaaa
aacagGATCTCTATTCTGTCAAAGTTGGTTTTTTTATACTTATTGATATT
AGAGAgaacttgttttttattttaagtttattatatattttaaatTAATA
TTATATAAACCCTTTTTGAAGGTTTAGGTTTCAGTGATAGTCAAAGTTTG
TCTGTCTAGAAGCttattatctttaaaaaaagggccaGGATAACTTAAGT
TTTCCTCGTGTTCTACGCGTAATAaccaatttataattttttttatctcc
atcaaaaatcaaaagtggAAATGAGAAATAGCATTTTCTGATAAGGTAAT
TGCCTTTCTTGAGATTTTTTCAAACTGATTTTGTGTTCTCATTGTTAAAG
TGATAAAGCAATGTAAGGCATACTACAAGATTCAGGATAAAAAACCTGTT
TGAACAAAATGGCTTAGCttgtttttataatttataagaactatTGTTTA
TGTTTTGAAGTAGGATTTCGAGTAGGGTTTTGTCAAAGTTCAATCCATTC
ACGACACTAAGAGAGGGAGAGAGAGTTTCTCTTCTATGGCTCCTTTGAGT
CTAGCAGATAACAAGTTTTTAATTAcaaacaattaaataaaaagCGGCGA
TGAAAGGTTGCTTTATATAAATTGATAACGAGGAAACGCGAAACCTAATT
AAGCCGTTTTGTTTTCGACATGAGTTGAAAAGTGTTTATTCACCCACAAG
GAAAGCATGTTTTCCCTAcgtcaaagaaaaaaaagtccCCCTGTATAAAT
TTGCTTTATTTCCCTAATGTGTTCATGAAGTTAAATTAATGACACTTTTA
TAATCAATTGATTTGggagaaatttcgaaaattccttattttagttGTAT
AAACAATAGCTTTtccctttttattgaaaattataaTGGATTTTGGGAAC
GATTTTTGaggtttcttttttttcgaaataaaaCGTGTTTTTGTTTGGGA
GAATTTCGTTTTATTGTGAGCCTTGAAAACGTGCTTTCTTTGGTGTGACG
TCAAAAGCCTTGATCCCTCTATTGGATAACCTAATCTATTTTGCAGTTGA
GAATTAATATTCATAAAAAGAATGAGAAAACCTTTTTGGAATCTGTAGTC
TTTTCCTGATAAACACTTTATCAATAGAACCTCTTTTAAATTATATTGAT
ATTATTTTTGGAGAgattaaaatttataaatttttgaaacatcGATATTC
AGAAATGTCATGCGcgttgtttttttgtttatttaaaatatattgtttta
tttatttgacaCAAACCCCCTCCCATNGATATTCAGAAATGTCATGCGCg
ctgtttttttgtttatttaaaatatattgttttatttatttgacaCAAAC
CCCCTCCCATCattgtaatatattttttgttgttaaattgctttaagaaa
aactttaatattttaaaattttttgtgtaaaagagattgatttaatttaa
aaataatacttttcctttacaatga Run BLAST on NCBI protein sequence of TCONS_00017117-protein >TCONS_00017117-protein ID=TCONS_00017117-protein|Name=TCONS_00017117-protein|organism=Clytia hemisphaerica|type=polypeptide|length=364bp
MSTALVSAFYDFNDVIQQQSKQRPAMLDLRQRPLEQRKPSNLLISRRHST
NSTNLNSLASPSFTKTNPLSPSSSSFFPMPSSPKDPFLNGCGSTLASALN
MRERAQSASFQEELDAQHRKRSGTNSSRYKTELCRPFEENGTCKYGDKCQ
FAHGYHELRGLNRHPKYKTEFCRTYHTIGFCPYGPRCHFIHNDEEKRLAQ
ASTGRSVSMSSMDSAPSSPVIDFAPSPFSNTPPTSPGVGDVFVFDEPTAQ
QNLPSMKSSLASMSTIPEISSHQFVPNHITRSISVSSALPSKTPSPPNLT
ISSLITEGTRIESRPNTFQPIQMKLDERNILTPSDSGSSNPPSPTDSLDG
SNRRRLPVFGLMKQ Run BLAST on NCBI transcript from alignment at sc0000259:173325..179550- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017117 ID=TCONS_00017117|Name=TCONS_00017117|organism=Clytia hemisphaerica|type=transcript|length=6226bp|location=Sequence derived from alignment at sc0000259:173325..179550- (Clytia hemisphaerica)
AACGTTAAATATAATATTGCAATCAATTTTCAAATTCAAAAGCTTGTTGA
GGTGAGTTTGGCATAATTTTTTTTGCAATTATTAACCGGAATTCCTTCAG
TGTTCTTAGTCAAATAAAAAAGTGTCGTAAATGCCTTTGTTAGCAAGGGA
AATTGCTAATGTTTATCTAAACATTGTTATGATGTCAACAGCAGAAGAGC
ACAGAAAAAAGTGCTTGACTATATTTGATTTGTTTCCTTCGTGCGTCAAG
ATAATTTGTTGTGTAAACTGAATTGCAGAATGTTCATCTAAGGTTCTAAC
ACTGCTGTGATATAATTTGATAGTTCTGTAAATCTGTTCAAGTATACATT
TTTCCATGAAACCATCATGATGGAGTTATAATTTTTTCTTCTTACCTGCT
TTTTGCTTTTTACTATCCTTGGAAACTTTATTAATTGTTACAGTGATTTT
TAATCGCTAGCTTGCTGATTAGATTACAAAAATAAGCGCATTTATTTTTT
GTCAGTGATGAACAACCCAGAATGCCATTTTAATTAATCAATTGTCATCA
AAAACTTTGAACTGTCATGCTTTTTCAAAACGGCATTGAATTACAATACA
TGAACTGTCACATTTACTGAAATTTTCCATGGATTCGAATCTTCAGAATC
TTATCTTTATATCTTGTAATGCCTTGTAATTTGCCTAAAATAAATTGATC
GCTTTTGTATGTATTTTATGTCAACTTTTTCGAATAATCAATCAATTTTT
ATTTTTATTTTGATCAACTAGTGACAGTTTGTTTAGCTCGGCTTCTACTT
TCATAGTTGAAAAGTTCTTTGTATGAAATATTGAACTTTCTTGGGAAAAA
TTTTATCTTTCACAAACCCTCAAAGGGTTTAATAAAAGATTATCTGATAC
CGTTATTAGAGCCTATTCTATCACTACCTCAAAATACCATTGAATATATA
AAGTGTTTAAAACCTTCTAAAACAATGAATCTAAAGTATTTATAAAGATT
TATAAAACCCTTCGAGACATCATGGCACCATAAAACTTTTGTTATGATTA
AGATTTTTTGTTATAACCTTTACAAACTTATATAAGAGAGACATAAGTCG
ACGAAATGTTAACTTTCTTTATGGTAAAAGTTTCAAATTTTTATTAGGAA
TTTCAGTTCATTTCGATTTGTCTTGTCTGAGAGAACACTTATTTGTTGTT
TTATTCTGCCTCAAAACCCATGTGTTTGGAATTCATGCTTATCTATGATC
CACAAAAAATGATGTTTGCTTTAAAACTTTGAACCAATCACAGCACTATT
TACAATGATAATAAATTATTTGGCATTCTATTTAACGAAAAAATGGCTGC
TTTCACAATTTGCTTTCGATGCGTAAACAAGCAAACATAACATCGTGGTA
AATAAAAAAAACACGCAGTACTTAAATCTCCTTTGCTTTTAAAGTAAACA
CAAATGTGTGTAAGAAAACACTTTGCATGTCAAAAAGTGTCTTTTAATAG
CGACTAGATATCAATTTTAACGTTCATACGCTGATTATGCTGAGATTTTA
TGACCCAAAATCAAGTCTAAATTCTTTCAGACTCATTTAAATTTCTCCTC
TTTTACTTTATAAATCCCTAAAATTCATTTATTACATTGAAAAGTAGCTG
TGATTACATATCATGATTGACTTTTGAATGTTTTGTAGAAAAAAAAACGA
GAGCATAAAAAACTATCGACCATGCTATTTTTTAAATGAGCGAAGAGCGT
CTGTGATTGGTTGTTTTTAAACAATACATAACAATGGAATTAAGTGTTCT
CGAGACAAAAGAGCTTTAAATGACAGATGTCGTAATCAAATACGCCTTTT
AGTTTGTTCCTATTGTTTTCAATTTTTTTTTGCGATAGAATAAACGAATC
AATTTGAACGACATAAGAAGGACTATAAGACATTTGTTAAAGACAGTATG
ACAGAGACATCAAAAGCATAAACATTGCGAACTTGAAATCCATGTGAACT
CGCTGTATAGCGGTGGTCTATTTTATACAATTACATGAACAGTTAAAGAG
AAATTATTATAACTCCATACATTTTAATTTATTTTGTGAAAAGAGAAGAA
AAACTTATTTATTTATCAATCATACCTTCATCGATTAAATTTACAGAAAT
GTCTACCGCGTTAGTATCAGCATTCTACGACTTCAATGATGTTATTCAAC
AACAGGTTTGTCAATATAAATCTTTTCCTCTTTCACTATCTTACTAATTT
TTTTGTGTTTTTGTTCAGGATAGTGGCTTTTTGAACTTTCATTTTCACTT
TTAGACTTTGTAAGTTTTTAAACTTTTGAAAAAAAAATTTGACATGAATT
TTTTCTCTTGTCATTTTATTAGAGCTATGATACATATAACTTTTGGTTAT
GAGCTAGCGGTTTTCACAATTCATGTAACTTTATATGAACATCGTTTAGA
TTAAAATTTGTGTGTTTTAAAATGCATTTTTTCTCTCAGTTATCTGTGGG
AACATCTCATTTCTTTTCTCTTCAATAACTTTACTTGTTTGTGCGGACTT
AATCATTTTTTTTTTACTAAATGGGTTATTCATCCTCGAAATAATTTCAT
GATAAGTGTTTTTTTGTCTCTTGAGGCGATAAGCCTACTTTCTTTTTATA
AAACACATGAAAAAATCGATCATTTTTTTATATGTGTGTTGTTCCATGTT
TATCTCACAGAAAAATAAGAAATCAGAGATATGATGAGAAAAAGTTTGTC
TAAAGTTTTAAATGTAGAGCAAACGTATTTGATTTAAAAATATAGTAAAT
GTATTTTGAACTTCTTATTTCTTTTGATTCAAACTGATGATTTATTTGTT
TATATTTTTAGAGCAAGCAACGACCAGCCATGTTAGATCTGCGTCAGCGA
CCACTAGAACAACGAAAACCAAGTAACTTATTGATATCTCGACGACACTC
AACGAATTCTACAAATTTGAATAGTTTGGCTTCACCATCATTCACCAAAA
CAAACCCGCTCTCACCATCTTCGAGCAGTTTCTTTCCAATGCCATCGTCA
CCTAAAGACCCCTTTTTGAACGGTTGTGGTTCAACCTTAGCATCTGCTCT
CAACATGCGGGAACGTGCTCAAAGTGCAAGCTTCCAAGAAGAACTCGACG
CACAACACCGTAAACGTAGCGGTACAAACTCAAGCCGTTACAAGACAGAA
CTTTGTCGTCCATTCGAAGAAAATGGTACCTGTAAATATGGAGACAAGTG
CCAATTTGCACATGGCTATCACGAACTTCGTGGCTTAAACCGTCACCCAA
AATACAAGACCGAATTTTGTCGTACTTATCACACTATCGGATTCTGTCCA
TACGGTCCGCGTTGTCACTTCATTCATAATGATGAGGAGAAACGTTTGGC
TCAAGCAAGCACTGGCCGATCTGTTTCCATGTCCAGCATGGATTCAGCTC
CCTCCTCTCCAGTCATTGACTTCGCTCCTTCACCATTCAGCAACACACCA
CCTACCTCCCCTGGAGTTGGAGACGTCTTTGTTTTTGACGAACCAACTGC
TCAACAAAACCTTCCATCCATGAAATCATCCCTGGCGAGTATGTCAACCA
TTCCGGAGATATCATCTCACCAGTTTGTACCGAACCACATCACTCGTAGC
ATCTCAGTTTCATCAGCTCTTCCCTCCAAAACACCTTCACCACCTAACCT
CACTATTTCAAGCTTAATCACTGAAGGCACACGGATCGAATCCAGACCAA
ACACTTTCCAACCCATTCAAATGAAATTGGACGAACGCAACATTTTGACT
CCATCTGATTCGGGATCATCCAACCCACCCTCTCCTACCGACTCTTTGGA
TGGCTCCAACCGACGTCGCTTGCCTGTTTTTGGACTCATGAAACAATAAA
TGGTATGTTGACACTTGAGTGTGTGAGAGAAAAGAGGAATTTTCCCTCTG
AAAACCAAAGTGTGAGAGCTAGATAAGAAAAAACTTAAATTATTACTATA
TTATTAACTATAAATACTTTTTTTTTTGGAAATATGTGTCTATTTTGTCC
GGTGTGTTATAACGAAAAAGCTTTTATGGTGATTGATACCCTTTTTACTT
GAGGTCTCTTATTGAGTGAAGTGAGCTAAGGAGCGTTGTGAGCAAAAAGG
AAAGTTATTTTTTCTATATTTTTTGTTTTTTTCTGGACTTTAAGGATTTA
TAAAATGTATATTTTATCGAAAAATTTTTATATATATAGTCTTATTATTA
TTATTATTATTATTACTATAGCTATGTTATTTAGTTTTCAAACTAGAAAA
AAAGGTAAAAGCATTTTTTTTTGATTTGTTATATTGTATAAGATATGGTA
TGACAATTTCTATAGCATTTTTTTCAAACTGTAAATATGATTTTCAGCAA
ACACATCCAAATTTTTTTTGTTCTAGATTTTGTTTTATTTGTTCAAATTT
TATTCTGCCTTCTCTCGATAGTCTGGAAGCCCTTCATTTGAGCTGGTTAT
TTTTTCCTGGATTTCTCATTCTGTCTAAATTGGATTGACTGGACTTTTTT
TCGAGAGTTGAAGGGTTTTCTTTGATCGTGTTTTTTAAAATCTTGGCGGA
GTTTTCTCATAGAAATTTTTCAACGAGAGAACTTTTTTGGACAGAGTATT
TTCTCTTCAGCCCAAACGTCTTATTTATATTTATATATATTATATAATTT
TTTGTTTAAATTTTTGAAATTGGTCCCCTAGATTTAGAAAAAAGAAGGAA
AAACAGGATCTCTATTCTGTCAAAGTTGGTTTTTTTATACTTATTGATAT
TAGAGAGAACTTGTTTTTTATTTTAAGTTTATTATATATTTTAAATTAAT
ATTATATAAACCCTTTTTGAAGGTTTAGGTTTCAGTGATAGTCAAAGTTT
GTCTGTCTAGAAGCTTATTATCTTTAAAAAAAGGGCCAGGATAACTTAAG
TTTTCCTCGTGTTCTACGCGTAATAACCAATTTATAATTTTTTTTATCTC
CATCAAAAATCAAAAGTGGAAATGAGAAATAGCATTTTCTGATAAGGTAA
TTGCCTTTCTTGAGATTTTTTCAAACTGATTTTGTGTTCTCATTGTTAAA
GTGATAAAGCAATGTAAGGCATACTACAAGATTCAGGATAAAAAACCTGT
TTGAACAAAATGGCTTAGCTTGTTTTTATAATTTATAAGAACTATTGTTT
ATGTTTTGAAGTAGGATTTCGAGTAGGGTTTTGTCAAAGTTCAATCCATT
CACGACACTAAGAGAGGGAGAGAGAGTTTCTCTTCTATGGCTCCTTTGAG
TCTAGCAGATAACAAGTTTTTAATTACAAACAATTAAATAAAAAGCGGCG
ATGAAAGGTTGCTTTATATAAATTGATAACGAGGAAACGCGAAACCTAAT
TAAGCCGTTTTGTTTTCGACATGAGTTGAAAAGTGTTTATTCACCCACAA
GGAAAGCATGTTTTCCCTACGTCAAAGAAAAAAAAGTCCCCCTGTATAAA
TTTGCTTTATTTCCCTAATGTGTTCATGAAGTTAAATTAATGACACTTTT
ATAATCAATTGATTTGGGAGAAATTTCGAAAATTCCTTATTTTAGTTGTA
TAAACAATAGCTTTTCCCTTTTTATTGAAAATTATAATGGATTTTGGGAA
CGATTTTTGAGGTTTCTTTTTTTTCGAAATAAAACGTGTTTTTGTTTGGG
AGAATTTCGTTTTATTGTGAGCCTTGAAAACGTGCTTTCTTTGGTGTGAC
GTCAAAAGCCTTGATCCCTCTATTGGATAACCTAATCTATTTTGCAGTTG
AGAATTAATATTCATAAAAAGAATGAGAAAACCTTTTTGGAATCTGTAGT
CTTTTCCTGATAAACACTTTATCAATAGAACCTCTTTTAAATTATATTGA
TATTATTTTTGGAGAGATTAAAATTTATAAATTTTTGAAACATCGATATT
CAGAAATGTCATGCGCGTTGTTTTTTTGTTTATTTAAAATATATTGTTTT
ATTTATTTGACACAAACCCCCTCCCATNGATATTCAGAAATGTCATGCGC
GCTGTTTTTTTGTTTATTTAAAATATATTGTTTTATTTATTTGACACAAA
CCCCCTCCCATCATTGTAATATATTTTTTGTTGTTAAATTGCTTTAAGAA
AAACTTTAATATTTTAAAATTTTTTGTGTAAAAGAGATTGATTTAATTTA
AAAATAATACTTTTCCTTTACAATGA Coding sequence (CDS) from alignment at sc0000259:173325..179550- >TCONS_00017117 ID=TCONS_00017117|Name=TCONS_00017117|organism=Clytia hemisphaerica|type=CDS|length=2190bp|location=Sequence derived from alignment at sc0000259:173325..179550- (Clytia hemisphaerica)
AGCAAGCAACGACCAGCCATGTTAGATCTGCGTCAGCGACCACTAGAACA
ACGAAAACCAAGTAACTTATTGATATCTCGACGACACTCAACGAATTCTA
CAAATTTGAATAGTTTGGCTTCACCATCATTCACCAAAACAAACCCGCTC
TCACCATCTTCGAGCAGTTTCTTTCCAATGCCATCGTCACCTAAAGACCC
CTTTTTGAACGGTTGTGGTTCAACCTTAGCATCTGCTCTCAACATGCGGG
AACGTGCTCAAAGTGCAAGCTTCCAAGAAGAACTCGACGCACAACACCGT
AAACGTAGCGGTACAAACTCAAGCCGTTACAAGACAGAACTTTGTCGTCC
ATTCGAAGAAAATGGTACCTGTAAATATGGAGACAAGTGCCAATTTGCAC
ATGGCTATCACGAACTTCGTGGCTTAAACCGTCACCCAAAATACAAGACC
GAATTTTGTCGTACTTATCACACTATCGGATTCTGTCCATACGGTCCGCG
TTGTCACTTCATTCATAATGATGAGGAGAAACGTTTGGCTCAAGCAAGCA
CTGGCCGATCTGTTTCCATGTCCAGCATGGATTCAGCTCCCTCCTCTCCA
GTCATTGACTTCGCTCCTTCACCATTCAGCAACACACCACCTACCTCCCC
TGGAGTTGGAGACGTCTTTGTTTTTGACGAACCAACTGCTCAACAAAACC
TTCCATCCATGAAATCATCCCTGGCGAGTATGTCAACCATTCCGGAGATA
TCATCTCACCAGTTTGTACCGAACCACATCACTCGTAGCATCTCAGTTTC
ATCAGCTCTTCCCTCCAAAACACCTTCACCACCTAACCTCACTATTTCAA
GCTTAATCACTGAAGGCACACGGATCGAATCCAGACCAAACACTTTCCAA
CCCATTCAAATGAAATTGGACGAACGCAACATTTTGACTCCATCTGATTC
GGGATCATCCAACCCACCCTCTCCTACCGACTCTTTGGATGGCTCCAACC
GACGTCGCTTGCCTGTTTTTGGACTCATGAAACAATAAATGTCTACCGCG
TTAGTATCAGCATTCTACGACTTCAATGATGTTATTCAACAACAGAGCAA
GCAACGACCAGCCATGTTAGATCTGCGTCAGCGACCACTAGAACAACGAA
AACCAAGTAACTTATTGATATCTCGACGACACTCAACGAATTCTACAAAT
TTGAATAGTTTGGCTTCACCATCATTCACCAAAACAAACCCGCTCTCACC
ATCTTCGAGCAGTTTCTTTCCAATGCCATCGTCACCTAAAGACCCCTTTT
TGAACGGTTGTGGTTCAACCTTAGCATCTGCTCTCAACATGCGGGAACGT
GCTCAAAGTGCAAGCTTCCAAGAAGAACTCGACGCACAACACCGTAAACG
TAGCGGTACAAACTCAAGCCGTTACAAGACAGAACTTTGTCGTCCATTCG
AAGAAAATGGTACCTGTAAATATGGAGACAAGTGCCAATTTGCACATGGC
TATCACGAACTTCGTGGCTTAAACCGTCACCCAAAATACAAGACCGAATT
TTGTCGTACTTATCACACTATCGGATTCTGTCCATACGGTCCGCGTTGTC
ACTTCATTCATAATGATGAGGAGAAACGTTTGGCTCAAGCAAGCACTGGC
CGATCTGTTTCCATGTCCAGCATGGATTCAGCTCCCTCCTCTCCAGTCAT
TGACTTCGCTCCTTCACCATTCAGCAACACACCACCTACCTCCCCTGGAG
TTGGAGACGTCTTTGTTTTTGACGAACCAACTGCTCAACAAAACCTTCCA
TCCATGAAATCATCCCTGGCGAGTATGTCAACCATTCCGGAGATATCATC
TCACCAGTTTGTACCGAACCACATCACTCGTAGCATCTCAGTTTCATCAG
CTCTTCCCTCCAAAACACCTTCACCACCTAACCTCACTATTTCAAGCTTA
ATCACTGAAGGCACACGGATCGAATCCAGACCAAACACTTTCCAACCCAT
TCAAATGAAATTGGACGAACGCAACATTTTGACTCCATCTGATTCGGGAT
CATCCAACCCACCCTCTCCTACCGACTCTTTGGATGGCTCCAACCGACGT
CGCTTGCCTGTTTTTGGACTCATGAAACAATAAATGTCTACCGCGTTAGT
ATCAGCATTCTACGACTTCAATGATGTTATTCAACAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017117-exon-sc0000259-1575043694:179500..179550 | TCONS_00017117-exon-sc0000259-1575043694:179500..179550 | Clytia hemisphaerica | exon |
| TCONS_00017117-exon-sc0000259-1575043694:177346..177404 | TCONS_00017117-exon-sc0000259-1575043694:177346..177404 | Clytia hemisphaerica | exon |
| TCONS_00017117-exon-sc0000259-1575043694:173325..176689 | TCONS_00017117-exon-sc0000259-1575043694:173325..176689 | Clytia hemisphaerica | exon |
| TCONS_00017117-exon-sc0000259-1510915933:179500..179550 | TCONS_00017117-exon-sc0000259-1510915933:179500..179550 | Clytia hemisphaerica | exon |
| TCONS_00017117-exon-sc0000259-1510915933:177346..177404 | TCONS_00017117-exon-sc0000259-1510915933:177346..177404 | Clytia hemisphaerica | exon |
| TCONS_00017117-exon-sc0000259-1510915933:173325..176689 | TCONS_00017117-exon-sc0000259-1510915933:173325..176689 | Clytia hemisphaerica | exon |
| TCONS_00017117-exon-sc0000259-1491911889:179500..179550 | TCONS_00017117-exon-sc0000259-1491911889:179500..179550 | Clytia hemisphaerica | exon |
| TCONS_00017117-exon-sc0000259-1491911889:177346..177404 | TCONS_00017117-exon-sc0000259-1491911889:177346..177404 | Clytia hemisphaerica | exon |
| TCONS_00017117-exon-sc0000259-1491911889:173325..176689 | TCONS_00017117-exon-sc0000259-1491911889:173325..176689 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000259 | supercontig | sc0000259:173325..179550 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000571 | Znf_CCCH |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046872 | metal ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0046872 |
metal ion binding |
Blast
BLAST of TCONS_00017117 vs. Swiss-Prot (Human)
Match: TISB (mRNA decay activator protein ZFP36L1 OS=Homo sapiens GN=ZFP36L1 PE=1 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 1.276e-41 Identity = 74/103 (71.84%), Postives = 80/103 (77.67%), Query Frame = 3
Query: 354 MRERAQSASFQEELDAQHRKRSG-TNSSRYKTELCRPFEENGTCKYGDKCQFAHGYHELRGLNRHPKYKTEFCRTYHTIGFCPYGPRCHFIHNDEEKR-LAQA 656
R+R+ S + L Q + G NSSRYKTELCRPFEENG CKYGDKCQFAHG HELR L RHPKYKTE CRT+HTIGFCPYGPRCHFIHN EE+R LA A
Sbjct: 86 FRDRSFSEGGERLLPTQKQPGGGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRALAGA 188
The following BLAST results are available for this feature:
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