TCONS_00017117-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00017117-protein
Unique NameTCONS_00017117-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length364

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00017117-protein ID=TCONS_00017117-protein|Name=TCONS_00017117-protein|organism=Clytia hemisphaerica|type=polypeptide|length=364bp
MSTALVSAFYDFNDVIQQQSKQRPAMLDLRQRPLEQRKPSNLLISRRHST
NSTNLNSLASPSFTKTNPLSPSSSSFFPMPSSPKDPFLNGCGSTLASALN
MRERAQSASFQEELDAQHRKRSGTNSSRYKTELCRPFEENGTCKYGDKCQ
FAHGYHELRGLNRHPKYKTEFCRTYHTIGFCPYGPRCHFIHNDEEKRLAQ
ASTGRSVSMSSMDSAPSSPVIDFAPSPFSNTPPTSPGVGDVFVFDEPTAQ
QNLPSMKSSLASMSTIPEISSHQFVPNHITRSISVSSALPSKTPSPPNLT
ISSLITEGTRIESRPNTFQPIQMKLDERNILTPSDSGSSNPPSPTDSLDG
SNRRRLPVFGLMKQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009572XLOC_009572Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00017117TCONS_00017117Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 166..193
e-value: 1.8E-7
score: 40.8
coord: 128..155
e-value: 7.7E-10
score: 48.7
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 167..192
e-value: 5.2E-8
score: 32.5
coord: 129..154
e-value: 2.5E-11
score: 43.1
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 128..156
score: 17.131
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 166..194
score: 15.234
IPR000571Zinc finger, CCCH-typeSUPERFAMILY90229CCCH zinc fingercoord: 165..197
IPR000571Zinc finger, CCCH-typeSUPERFAMILY90229CCCH zinc fingercoord: 126..159
NoneNo IPR availableGENE3D4.10.1000.10coord: 120..160
e-value: 1.4E-14
score: 53.1
coord: 161..199
e-value: 2.0E-9
score: 36.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..79
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 328..364

Blast
[Close]
BLAST of TCONS_00017117-protein vs. Swiss-Prot (Human)
Match: TISB (mRNA decay activator protein ZFP36L1 OS=Homo sapiens GN=ZFP36L1 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.833e-46
Identity = 100/208 (48.08%), Postives = 116/208 (55.77%), Query Frame = 0 
Query:    1 MSTALVSA-FYDFNDVIQQQSKQRPAMLDLRQRPLEQRK----PSNLLISRRHSTNSTNLNSLASPSFTKTNPLSPSSSSFFPMPSSPKDPFLNGCGSTLASALNMRERAQSASFQEELDAQHRKRSG-TNSSRYKTELCRPFEENGTCKYGDKCQFAHGYHELRGLNRHPKYKTEFCRTYHTIGFCPYGPRCHFIHNDEEKR-LAQA 201
            M+T LVSA  +D ++V+ + +K            L  RK    P+     RRHS       +L S  F +   LS       P  SS    F              R+R+ S   +  L  Q +   G  NSSRYKTELCRPFEENG CKYGDKCQFAHG HELR L RHPKYKTE CRT+HTIGFCPYGPRCHFIHN EE+R LA A
Sbjct:    1 MTTTLVSATIFDLSEVLCKGNKMLNYSAPSAGGCLLDRKAVGTPAGGGFPRRHSV------TLPSSKFHQNQLLSSLKGEPAPALSSRDSRF--------------RDRSFSEGGERLLPTQKQPGGGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRALAGA 188
The following BLAST results are available for this feature:
BLAST of TCONS_00017117-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TISB1.833e-4648.08mRNA decay activator protein ZFP36L1 OS=Homo sapie... [more]
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