TCONS_00017052 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017052
Unique NameTCONS_00017052
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1180

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017052 ID=TCONS_00017052|Name=TCONS_00017052|organism=Clytia hemisphaerica|type=transcript|length=1180bp
ttgttgataaattttgaattatattttaaaacatAAGGATCAATACTTGC
TTTACTAagcttttcaaatcaaaaaaaacttatgGAGAAATCATTATTTA
TCCCccggtttttttttctcgacCCATTCTTCTGGCGCGCTGAAATAGTT
TCCCCGCTCAATTTTCATCACGAAAAAAGTTcacaagaagaagaaaaagt
ctGACACACGAACCATCATTACCACAAAACTTACTTAAAAATGGCACGTA
CTAAACAAACAGCCAGGAAATCCACTGGAGGAAAAGCTCCAAGAAAACAG
CTTGCCACCAAAGCAGCAAGAAAAAGTGCACCATCGACTGGTGGAGTGAA
GAAACCACATCGATACAGACCTGGTACTGTCGCACTTCGAGAAATCCGTC
GATACCAAAAATCTACTGAATTACTGATCAGAAAACTTCCTTTCCAACGT
TTAGTTCGTGAGATTGCTCAAGACTTTAAAACTGATCTTCGATTCCAGAG
TGCTGCTATTGGTGCCCTGCAAGAAGCTGCTGAAGCCTACCTTGTTGGTC
TCTTTGAAGACACCAACTTGTGCGCTATTCACGCTAAGCGTGTCACCATT
ATGCCTAAAGATATCCAATTGGCCCGAAGAATCCGTGGAGAACGTGCATA
AGCAGTATGAGGGGGTTTTTTAAGCATAGAATTTGATATATAACAACAGA
CTTTAATATTTATGGTAATTCATGAACAACAAAAGACTTGTAAATAATGC
TGAAGTTTTATCAATAAGAAGTTTTATACCAGATTTTGAATTTACAAGGT
GATTTTTTAGTGGAGgtctcacttttgatttttcattgaACCATAGAAGA
TATCCCTCTTACAAATCTTTTAAACTAATTTGGATCACAAAGTCTATATT
TTGAACATCACTAAGCTCAAGAACCGATTTCACGTTAGGTGGGATCAATT
TtaattcttgtattttttaatttttgtcgtCATGTACATAAAAGATTCTT
CTCCCTCAAAAAACTTGacatttaattttttgtctttcGTCCTGCCAGAA
ATTCTCCCAGCTGAGATTGTCAGATAAGGAAACCGATaccggaaattttg
gcaaaaatttcgttccCGTTGGAAAAAATACACTAGCATTTCAGCCCTCC
TGGGTGATTGACTTGATTTCAATTCCATTT
Run BLAST on NCBI

protein sequence of TCONS_00017052-protein

>TCONS_00017052-protein ID=TCONS_00017052-protein|Name=TCONS_00017052-protein|organism=Clytia hemisphaerica|type=polypeptide|length=136bp
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALR
EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEAAEAY
LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Run BLAST on NCBI

transcript from alignment at sc0000257:205563..208662-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017052 ID=TCONS_00017052|Name=TCONS_00017052|organism=Clytia hemisphaerica|type=transcript|length=3100bp|location=Sequence derived from alignment at sc0000257:205563..208662- (Clytia hemisphaerica)
TTGTTGATAAATTTTGAATTATATTTTAAAACATAAGGATCAATACTTGC
TTTACTAAGCTTTTCAAATCAAAAAAAACTTATGGAGAAATCATTATTTA
TCCCCCGGTTTTTTTTTCTCGACCCATTCTTCTGGCGCGCTGAAATAGTT
TCCCCGCTCAATTTTCATCACGAAAAAAGTTCACAAGAAGAAGAAAAAGT
CTGACACACGAACCATCATTACCACAAAACTTACTTAAAAATGGCACGTA
CTAAACAAACAGCCAGGAAATCCACTGGAGGAAAAGCTCCAAGAAAACAG
CTTGCCACCAAAGCAGCAAGAAAAAGTGCACCATCGACTGGTGGAGTGAA
GAAACCACATCGATACAGACCTGGTACTGTCGCACTTCGAGAAATCCGTC
GATACCAAAAATCTACTGAATTACTGATCAGAAAACTTCCTTTCCAACGT
TTAGTTCGTGAGATTGCTCAAGACTTTAAAACTGATCTTCGATTCCAGAG
TGCTGCTATTGGTGCCCTGCAAGTAAGAGTCTTATTTTAATATTTGCATG
ATTTTTTATTAAGAGAATGAATATTAAATTAGTGTTAGAAGTTAGAATTT
TATGCGCATCAGAAAATTTTTCGAAAAGTTAGTTCTTAGAGGGGTTTTAT
TTAAAGAATTCTGCACTTATATACTAAAAGTAGACATGTATTTAGACAAA
AAGGACAAGGCCTGGGCTCACCAATAAGTTGTGTTCGCGTCATCCTCCGA
CCAACTTGCTTTCTATTTTTTTTAAATCCGACCCTTTTCTAGTGGGAATG
TTGGAAAATTTGTCGAATTTTTCAGTGTTATTATTCAAAGAATTTTGTAA
ATGCAGCGTAGGCAGTGTATTGATCATCGAGTGTTTTTAAGATTTTGTCC
GTAATTTTGCAAAGATTTTTTGCGGTAAAAAGCACTGCGCAACTGCTTTT
TGTGCGGTCGGTCGCGATATGCAAAGTAATCACATCGCAGCTCGCACGCA
CTCAATGATTCTTGTCGGCTGAACAACCTTAATGCTCAGAGCGCATTTTT
CCGATGATTTTAGCACCGCCAATCGTCTATATTCAGAGCGCATTATCTGA
TGATCTAAGATGCCGGCCGGCCTACTCACAATTTGGGGCTGGAAATGATG
CGAACACAACTTATTGATGACCCACGCCCAACAACTTTCATAAAGAACGA
CAAATTTCGCCATCCACAATCAACCTGACACTGAAAGTGACTGTACCACC
CTACATATTCATTCCTCTCCTGGAGGGGGTACTAGGTCTGCGAGATAACA
GTGTGGTGCCACCAGATTTTTGAAAATCAGAAATGTTAGGGTAGAAAATC
GAAGAAAAAGTAAAATTTTATAGATTTGAGACCCATGGGGGATTTTTTCC
CAAGTTTAGCCTTTTTCAGGGTAAATATGTACATGTTTTTTTTTATAAGG
AACTTGAGGCTTAAAATGGTCTGAGAAATAAGGAATTGTTAAGGAACTGT
TCAGGCTGAGAATAAAAAAACAAGTTAAGGAACAGCAAGAGTTCAATTTG
AATCTGCACACATTTACAATAACCTAATGCAGGATTCTTTAGTGGAACAG
ACTGTTAGGGGCCACTATCAGATAAATTTTTCGACAGTTTATGTCTTTCT
GATATAATGTCAAGACCCCCTACCCCCTACAACTATTTATTGATTTGAAT
GTTGAGTTTGTGAAGAAAATGTTCGACTATTCACCCTTATTTCACCCCTC
TTAATGGTATATGTAAGATTTTTTAAAGTAAAAAAAATTAGTTTGCAAAA
TATTGGGGGGGGGCATGCCCCCCCTGGGCCGAAGACGAGGCCATGCGTCA
AGTAGCCATCCAAACTCAAACTTACCACAAAACTTTGGAATGTTTTGTTT
AAGAACCCCTCACCCCTTCCATAGCATAACATTGCTGTGACAATCAAACT
TACTCTCAAGATATTCAAACCTTCATCCCTGTAAATATTCTACGGCTAAT
GGCTTTTTTGTCAGCAATCTTTTTTTTGCAAGGATCCCATAGTTTAAATA
TTTTTAAACTTAAAAATTTGAGGGCTGTGTGTGTGTGTGAGCCATCTAGC
AAGTCACAGAGACATAAACATCATGAAAAAGCCCCTTTGTTTAGTACTTA
TTAACACTTAAAATTTGAAAGACATCTTACTCTGATTCATTATTACGATC
GATATTCAGTTTTATAGTTTGTTAGTTTGTTCCATACATTTGCCTTAAAA
ATTGGGTCTATTTTGAAATATGCTGACATTATCAAAATTTGAAGGATAGG
AAAGACTTTTCAGATTATGAAGCAAAATAAAACTGAGAAAAACTTGTGCA
ACTTCAAGTCTTTATCTAAAGTTCAGGAAAAAAGATATGCAGTGCTGCAT
TTAGGCGGTGTTCTACTAAACTGTCTCCTAATTTTCATTCAGGAAGCTGC
TGAAGCCTACCTTGTTGGTCTCTTTGAAGACACCAACTTGTGCGCTATTC
ACGCTAAGCGTGTCACCATTATGCCTAAAGATATCCAATTGGCCCGAAGA
ATCCGTGGAGAACGTGCATAAGCAGTATGAGGGGGTTTTTTAAGCATAGA
ATTTGATATATAACAACAGACTTTAATATTTATGGTAATTCATGAACAAC
AAAAGACTTGTAAATAATGCTGAAGTTTTATCAATAAGAAGTTTTATACC
AGATTTTGAATTTACAAGGTGATTTTTTAGTGGAGGTCTCACTTTTGATT
TTTCATTGAACCATAGAAGATATCCCTCTTACAAATCTTTTAAACTAATT
TGGATCACAAAGTCTATATTTTGAACATCACTAAGCTCAAGAACCGATTT
CACGTTAGGTGGGATCAATTTTAATTCTTGTATTTTTTAATTTTTGTCGT
CATGTACATAAAAGATTCTTCTCCCTCAAAAAACTTGACATTTAATTTTT
TGTCTTTCGTCCTGCCAGAAATTCTCCCAGCTGAGATTGTCAGATAAGGA
AACCGATACCGGAAATTTTGGCAAAAATTTCGTTCCCGTTGGAAAAAATA
CACTAGCATTTCAGCCCTCCTGGGTGATTGACTTGATTTCAATTCCATTT

Coding sequence (CDS) from alignment at sc0000257:205563..208662-

>TCONS_00017052 ID=TCONS_00017052|Name=TCONS_00017052|organism=Clytia hemisphaerica|type=CDS|length=822bp|location=Sequence derived from alignment at sc0000257:205563..208662- (Clytia hemisphaerica)
GAAGCTGCTGAAGCCTACCTTGTTGGTCTCTTTGAAGACACCAACTTGTG
CGCTATTCACGCTAAGCGTGTCACCATTATGCCTAAAGATATCCAATTGG
CCCGAAGAATCCGTGGAGAACGTGCATAAATGGCACGTACTAAACAAACA
GCCAGGAAATCCACTGGAGGAAAAGCTCCAAGAAAACAGCTTGCCACCAA
AGCAGCAAGAAAAAGTGCACCATCGACTGGTGGAGTGAAGAAACCACATC
GATACAGACCTGGTACTGTCGCACTTCGAGAAATCCGTCGATACCAAAAA
TCTACTGAATTACTGATCAGAAAACTTCCTTTCCAACGTTTAGTTCGTGA
GATTGCTCAAGACTTTAAAACTGATCTTCGATTCCAGAGTGCTGCTATTG
GTGCCCTGCAAGAAGCTGCTGAAGCCTACCTTGTTGGTCTCTTTGAAGAC
ACCAACTTGTGCGCTATTCACGCTAAGCGTGTCACCATTATGCCTAAAGA
TATCCAATTGGCCCGAAGAATCCGTGGAGAACGTGCATAAATGGCACGTA
CTAAACAAACAGCCAGGAAATCCACTGGAGGAAAAGCTCCAAGAAAACAG
CTTGCCACCAAAGCAGCAAGAAAAAGTGCACCATCGACTGGTGGAGTGAA
GAAACCACATCGATACAGACCTGGTACTGTCGCACTTCGAGAAATCCGTC
GATACCAAAAATCTACTGAATTACTGATCAGAAAACTTCCTTTCCAACGT
TTAGTTCGTGAGATTGCTCAAGACTTTAAAACTGATCTTCGATTCCAGAG
TGCTGCTATTGGTGCCCTGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009534XLOC_009534Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017052-proteinTCONS_00017052-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017052-exon-sc0000257-1575043694:208141..208662TCONS_00017052-exon-sc0000257-1575043694:208141..208662Clytia hemisphaericaexon
TCONS_00017052-exon-sc0000257-1575043694:205563..206220TCONS_00017052-exon-sc0000257-1575043694:205563..206220Clytia hemisphaericaexon
TCONS_00017052-exon-sc0000257-1510915933:208141..208662TCONS_00017052-exon-sc0000257-1510915933:208141..208662Clytia hemisphaericaexon
TCONS_00017052-exon-sc0000257-1510915933:205563..206220TCONS_00017052-exon-sc0000257-1510915933:205563..206220Clytia hemisphaericaexon
TCONS_00017052-exon-sc0000257-1491911889:208141..208662TCONS_00017052-exon-sc0000257-1491911889:208141..208662Clytia hemisphaericaexon
TCONS_00017052-exon-sc0000257-1491911889:205563..206220TCONS_00017052-exon-sc0000257-1491911889:205563..206220Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000257supercontigsc0000257:205563..208662 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
440.713	455.703	242.466	219.69	702.973	585.829	483.602	489.947	534.287	429.047	463.122	512.077	342.53	319.735	304.256	329.096	520.372	515.175	345.521	383.591	451.4	426.518	583.946	536.681	305.982	355.742	525.448	477.576	395.965	444.537
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000164Histone_H3/CENP-A
IPR007125Histone_H2A/H2B/H3
IPR009072Histone-fold
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0000786 nucleosome
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
Blast
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BLAST of TCONS_00017052 vs. Swiss-Prot (Human)
Match: H33 (Histone H3.3 OS=Homo sapiens GN=H3F3A PE=1 SV=2)

HSP 1 Score: 247.669 bits (631), Expect = 9.434e-81
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:  241 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSXXXXXXXXXXXXYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 648
            MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
The following BLAST results are available for this feature:
BLAST of TCONS_00017052 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
H339.434e-8199.26Histone H3.3 OS=Homo sapiens GN=H3F3A PE=1 SV=2[more]
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