TCONS_00017052-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00017052-protein
Unique NameTCONS_00017052-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length136

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00017052-protein ID=TCONS_00017052-protein|Name=TCONS_00017052-protein|organism=Clytia hemisphaerica|type=polypeptide|length=136bp
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALR
EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEAAEAY
LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009534XLOC_009534Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00017052TCONS_00017052Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000164Histone_H3/CENP-A
IPR007125Histone_H2A/H2B/H3
IPR009072Histone-fold
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0000786 nucleosome
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000164Histone H3/CENP-APRINTSPR00622HISTONEH3coord: 3..17
score: 97.1
coord: 34..55
score: 93.58
coord: 114..135
score: 94.86
coord: 17..31
score: 92.32
coord: 58..75
score: 97.46
coord: 98..114
score: 96.93
coord: 80..98
score: 81.81
IPR000164Histone H3/CENP-ASMARTSM00428h35coord: 34..136
e-value: 4.4E-74
score: 262.1
IPR000164Histone H3/CENP-APROSITEPS00322HISTONE_H3_1coord: 15..21
IPR000164Histone H3/CENP-APROSITEPS00959HISTONE_H3_2coord: 67..75
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 1..132
e-value: 8.4E-54
score: 181.4
NoneNo IPR availableGENE3D1.10.20.10coord: 2..136
e-value: 2.2E-81
score: 269.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..43
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 2..133

Blast
[Close]
BLAST of TCONS_00017052-protein vs. Swiss-Prot (Human)
Match: H33 (Histone H3.3 OS=Homo sapiens GN=H3F3A PE=1 SV=2)

HSP 1 Score: 272.322 bits (695), Expect = 4.477e-96
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
            MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
The following BLAST results are available for this feature:
BLAST of TCONS_00017052-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
H334.477e-9699.26Histone H3.3 OS=Homo sapiens GN=H3F3A PE=1 SV=2[more]
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