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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017044 ID=TCONS_00017044|Name=TCONS_00017044|organism=Clytia hemisphaerica|type=transcript|length=1536bpRun BLAST on NCBI protein sequence of TCONS_00017044-protein >TCONS_00017044-protein ID=TCONS_00017044-protein|Name=TCONS_00017044-protein|organism=Clytia hemisphaerica|type=polypeptide|length=337bp MIFNFGENPTMDVIRMLMHYAAVQQKKLKENTHTTDALVTTNTRKTLLNPRun BLAST on NCBI transcript from alignment at sc0000257:30704..125647- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017044 ID=TCONS_00017044|Name=TCONS_00017044|organism=Clytia hemisphaerica|type=transcript|length=94944bp|location=Sequence derived from alignment at sc0000257:30704..125647- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000257:30704..125647- >TCONS_00017044 ID=TCONS_00017044|Name=TCONS_00017044|organism=Clytia hemisphaerica|type=CDS|length=9126bp|location=Sequence derived from alignment at sc0000257:30704..125647- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00017044 vs. Swiss-Prot (Human)
Match: RFOX2 (RNA binding protein fox-1 homolog 2 OS=Homo sapiens GN=RBFOX2 PE=1 SV=3) HSP 1 Score: 127.872 bits (320), Expect = 2.619e-32 Identity = 61/108 (56.48%), Postives = 73/108 (67.59%), Query Frame = 2
Query: 623 PKRLHVTNLPFKVRDTELRNMFAIYGSVLDAEIIYNERGSKGFGFVTMETSEDASKAKEALHGKEIDGRKIEVNKATPR--TNTSKVTPRLRNK--SPIAATTATPGL 934
PKRLHV+N+PF+ RD +LR MF +G +LD EII+NERGSKGFGFVT E S DA +A+E LHG ++GRKIEVN AT R TN VTP SP+ P L
Sbjct: 120 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPEL 227 The following BLAST results are available for this feature:
BLAST of TCONS_00017044 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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