TCONS_00017044-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00017044-protein
Unique NameTCONS_00017044-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length337

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00017044-protein ID=TCONS_00017044-protein|Name=TCONS_00017044-protein|organism=Clytia hemisphaerica|type=polypeptide|length=337bp
MIFNFGENPTMDVIRMLMHYAAVQQKKLKENTHTTDALVTTNTRKTLLNP
EDVTTIIATPALDAQESLNGTTTASTSDHKISPLLSQSGLSSTATAPVIT
AATNDGPKRLHVTNLPFKVRDTELRNMFAIYGSVLDAEIIYNERGSKGFG
FVTMETSEDASKAKEALHGKEIDGRKIEVNKATPRTNTSKVTPRLRNKSP
IAATTATPGLVQPTGAGHLNGVIRPITMATQAAAYPAAWNPASLTALSTP
SIPTTFQLPPSPHQLLSSAISTGTMPGTANPMFSSFPSPFYPTPEQYAQY
YNYITGGSSVPVTPNTNQTGPIRAAPNTNMFHRFQPY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009533XLOC_009533Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00017044TCONS_00017044Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR034237FOX1_RRM
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 109..180
e-value: 6.4E-25
score: 98.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 111..177
e-value: 7.7E-19
score: 67.2
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 108..184
score: 18.82
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 101..196
NoneNo IPR availableGENE3D3.30.70.330coord: 22..196
e-value: 4.4E-26
score: 91.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..88
IPR034237FOX1, RNA recognition motifCDDcd12407RRM_FOX1_likecoord: 108..183
e-value: 1.62279E-43
score: 145.243

Blast
[Close]
BLAST of TCONS_00017044-protein vs. Swiss-Prot (Human)
Match: RFOX2 (RNA binding protein fox-1 homolog 2 OS=Homo sapiens GN=RBFOX2 PE=1 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 1.935e-33
Identity = 61/108 (56.48%), Postives = 73/108 (67.59%), Query Frame = 0 
Query:  107 PKRLHVTNLPFKVRDTELRNMFAIYGSVLDAEIIYNERGSKGFGFVTMETSEDASKAKEALHGKEIDGRKIEVNKATPR--TNTSKVTPRLRNK--SPIAATTATPGL 210
            PKRLHV+N+PF+ RD +LR MF  +G +LD EII+NERGSKGFGFVT E S DA +A+E LHG  ++GRKIEVN AT R  TN   VTP       SP+      P L
Sbjct:  120 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPEL 227
The following BLAST results are available for this feature:
BLAST of TCONS_00017044-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RFOX21.935e-3356.48RNA binding protein fox-1 homolog 2 OS=Homo sapien... [more]
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