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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016958 ID=TCONS_00016958|Name=TCONS_00016958|organism=Clytia hemisphaerica|type=transcript|length=455bp
ccCTCGTACCCAGTAACCTGTTACTATCTTCTATCCTTAAGCACAaaCAA
AAAGACAACCATGAAGAAGATGTTTGGGTCGTAGTAAAAGATAATTTGGT
TGCAGTTCTGAAGATCTTCCGAGAGATGTACATATTGGAGTTATTTATAA
TATCCATTGCACTAGGAATGGTTCATAGTTTTATGATAGGCGACATGACA
AAGAATTTCGCAACATGTGCTTTTGGAATTCAATACATTGGTTATGTCAT
TATGTGCAGTGGGCTGGGAAACTGTCTGGCTGCTTTGACGGTTCATACAC
TCATTGAAAAGATCGGTATCTTCATCATCATTATGACGTCATGGGCATGC
GCGACTACCATCATgatcagtttttttttctggaatgtcGCATCATCTCC
TCCTGATGTTCTCCTCGTTATCAACATTCTGTTCGCGATGGCTGAAGGTG
CTCTC Run BLAST on NCBI protein sequence of TCONS_00016958-protein >TCONS_00016958-protein ID=TCONS_00016958-protein|Name=TCONS_00016958-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
LVPSNLLLSSILKHKQKDNHEEDVWVVVKDNLVAVLKIFREMYILELFII
SIALGMVHSFMIGDMTKNFATCAFGIQYIGYVIMCSGLGNCLAALTVHTL
IEKIGIFIIIMTSWACATTIMISFFFWNVASSPPDVLLVINILFAMAEGA
L Run BLAST on NCBI transcript from alignment at sc0000255:208924..212865+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016958 ID=TCONS_00016958|Name=TCONS_00016958|organism=Clytia hemisphaerica|type=transcript|length=3942bp|location=Sequence derived from alignment at sc0000255:208924..212865+ (Clytia hemisphaerica)
ccCTCGTACCCAGTAACCTGTTACTATCTTCTATCCTTAAGCACAGTGAg
ttcaacattttttgcttgataTATTCACAATGAAACAATCCCTTGTTCTC
TCTAAAAAGTTTGGTCTCGAAATATCCAAAAATCTCATGCCTTTTGTAAT
CAATGAGGCCCTcccagtcacctttcaaatAACGCAATCACGGAAAAaga
tttccaaatcacgttatcaagataaattttctttctatcacgatcacgtt
ggTTTCTCCAATCACGTAATCATGCacttttaaatcttaaatcacAAACT
TAAAAAACGCCCAAttacgccatcacgaaaaccgctagGGGCCTCACAAA
TTCCACCATTGAAAGTAATAAATTCCaccattgaaaatgaaataggGGAA
ACTGCCTTCCAAAACCATCTCTATTAATTTCTTTAGCCTAAGATAATAAG
AAGCTTTATCTGCACTTGGTGAATGGTGTTTTAAGAAACTTAGAGAGAGG
TGAACCGGAGAACAGTTTCCTCCACCTACGCTACATACCTAACAAAAtcc
ttttttaaataaatgaaCCATAAAAAGCCAAGATTGCAAGTCAGAATTCT
ACATTGTAAATTTGTCGTTCCTTAAACCATATGTAATCAATTCCCATGAT
TACCAAAGCGGATTGAATACGTAGGGGTGGTACCAggctttcggtcgggg
ttgtggacggtgataattgttgttttttatgaaatttgttattctttttg
tcaaattttagtTAATGCAAGATTCTTtattagataaaccccctcttgtg
tggattaaaaaaatcaaaaaatcaaacattttctttttaacGATATTTCG
ATCTTTACAGATCTTtatcaagtttaaaaaaataatttttagatgACAGG
AAGGTTAATTACCATACCAACTCCACATTACAAATGAATTTACAGTGTGG
TATAAAAGCATGCCCAACATTAACCAGCGCACTGTCACATGTCAACATAA
AAGACGTCCACAGGTTATTCTGGATTTACTTGGAAGTTGGTCTTTCAGGA
GTGCCAAtcattttgcttttcttttcaaacatcaaagaaCAAAAAGACAA
CCATGAAGAAGATGTTTGGGTCGTAGTAAAAGATAATTTGGTTGCAGTTC
TGAAGATCTTCCGAGAGATGTACATATTGGAGTTATTTATAATATCCATT
GCACTAGGAATGGTTCATAGTTTTATGATAGGCGACATGACAAAGGTACG
GTTNttgagggaatcaccttttcagtaatgactctaaaaagacgattcct
taaatgtcatgatagaaaataaaatagagaAGCTATTAAAAttgaatccc
tcatgagcaaatgccaaattacaaatgccagttggtctaaacgcagccat
tgcAAGTCAGAATTCTACATTgtaaatttgtcgttctttaaaccaTATGT
AATCAATTCCCATGATAATGAAAGTGGATTGAATACGTAGAGGtagtaca
gtcactttcggtcggggttgtggacggtgatatttttcgtttttatgaAA
TGTGTCATTCTTTTTGTCTAATTTTAgttaatgcaggattctttattaga
taaaccccctcttGTGTggatcaaaaaaatcaaaaaatcaaaaacatttt
ctttttaacGATATTTCGATCTTTACAGATCTTTatcaagtttttaaaaa
taatttttagatgACAGGAAGGTTAATTACCATACCAACTCCACATTACA
AATGAATTTGCAGTGTGGTATAAAAGCATGCCCAACATTAACCAGCACGC
TGTCGCATGTCAACATAAAAGACGCCCACAGGTTATTCTGGATTTACTTG
GAAGTTGGTCTTTCAGGAGTACCAATCATTTTGCTCttcttttcaaacat
caaagaaCAAAAAGACAACCAGGAAGAAGATGTTTGGGTCGTAGTAAAAG
ATAATTTGGTTGCAGTTCTGAAGATCTTCCGAGAGATGTGGATATTGGAG
TTATTTATAATATCCATGGCGCAAGGAATGGTTCAAAGTTTTATAATAGG
CGACATGACAAAGGTACGGTTGTTTTAGACTGGtgcgccagtcgggctgg
aactgtatcacgcgggaaaagtgagcgtaggagttaggtaagcgtaggaa
aataaattttgtcgGTGGCAAGGGCTGGTAgctaatcagcagcctctcac
caacttttgcccgttctcctacgcagctcatattctagcaaacgcccgct
gCCTTTTTGTTCCCGTCCTCTGAcgtgattaattaacagactagtttgct
agtctacggTTGTTTTCATTTCGTTTTAACTCTAATATCAGAGCGATTGC
CTTTCTCCtttgttgaaatttcaaattccaaAGCAAAATGTACCGCTATC
TTGTTCATTAGGGCTTTTGTATATAGTAAACCAGtatttagaccatgttc
gcGCGTAACGGAATgcagccattctattggttagaagtgacgtaacactt
gaatgtaaccaatagaatggcttcatttcgtctcggagcgaaacggaacc
atCACGTGCGAACATGATCTTAAACCATCTTTATTACCCCTTCAGAATTT
CGCAACATGTGCTTTTGGAATTCAATACATTGGTTATGTCATTATGTGCA
GTGGGCTGGGAAACTGTCTGGCTGCTTTGACGGTTCATACACTCATTGAA
AAGGTTGATTTAAAATACTTGCACTTAttccttttcgaccgtagtcgcgt
ggcattttttgtccgctttatctcACTNGTTCGAAATGCttgcaatacac
cttttcgaccgtagtcgcgcgggcattttttgtccgctttatcccactaa
aaccgtcccaatccttttttgacgcatttttctattgtctataggtgtga
GAAAAGGACTGGTACGATTTTAGTGGGATACAGcagactacggtcgaaaa
gttgTATTATTCCAAACATGAACTGTTTGTGAAATACTTTTAGAGAGTGA
CTATTTTAACTTTAATGTTTAGAATTAAAAAGCATACGACACCCCTTTTC
TCACACTCCCACTGGataatatcgtccccagtgaaTGTTATCCGCCAATC
TTTGTCCTCACTGAAAATGAACCAATTCTCACTGAAAAATGCTAGATGCT
CTTTTCagccccatccccactgaattttcggacttgaaaacaaaagaatt
gaaatctaaAGTCATGAAAATACTAGAATATCAattcccatcgagtttca
gttcgttatttttatccccactggctgacaAAATCCCACCGGAATTGTGA
GAAGGGGGCGTCATATGGCGAGTATTTCGAGGGCGGATAGCATCAATCGT
ATCGGATGATGTTGGGAAGCGGAAGATGAACTATAATTAGGTATTGCCGG
GTATGTGCAGAGCATCCCCCCCTGAACCCTGAATAACAAACCCGATCCTT
AAGCCATACCCATACCTAGCCTGAGCCCCCTctctactctgtaccagagt
gtaacTCATGTTTATCGGTTTGTTACACTCtttgcgcattgtctgttttg
taaaaaaattcccgtacggagacctctgcgatgaagaaTAATTTATAAAT
AGAAACACTTCTTtcgtcgtctcccctctctcactcgcactccatcgcag
cgttccgtttgaaaaatctcaaatcagaaaaaaacaatgacaaCAGATCC
TCTACGgctatgaattttgaaataagccgtaTATATcaggtctgtgtaca
gactacCCCCTCGGATTTTGTTTGAtgattgttttttcttaaacCCAGAT
CGGTATCTTCATCATCATTATGACGTCATGGGCATGCGCGACTACCATCA
TgatcagtttttttttctggaatgtcGCATCATCTCCTCCTGATGTTCTC
CTCGTTATCAACATTCTGTTCGCGATGGCTGAAGGTGCTCTC Coding sequence (CDS) from alignment at sc0000255:208924..212865+ >TCONS_00016958 ID=TCONS_00016958|Name=TCONS_00016958|organism=Clytia hemisphaerica|type=CDS|length=1812bp|location=Sequence derived from alignment at sc0000255:208924..212865+ (Clytia hemisphaerica)
CTCGTACCCAGTAACCTGTTACTATCTTCTATCCTTAAGCACAaaCAAAA
AGACAACCATGAAGAAGATGTTTGGGTCGTAGTAAAAGATAATTTGGTTG
CAGTTCTGAAGATCTTCCGAGAGATGTACATATTGGAGTTATTTATAATA
TCCATTGCACTAGGAATGGTTCATAGTTTTATGATAGGCGACATGACAAA
GAATTTCGCAACATGTGCTTTTGGAATTCAATACATTGGTTATGTCATTA
TGTGCAGTGGGCTGGGAAACTGTCTGGCTGCTTTGACGGTTCATACACTC
ATTGAAAAGATCGGTATCTTCATCATCATTATGACGTCATGGGCATGCGC
GACTACCATCATgatcagtttttttttctggaatgtcGCATCATCTCCTC
CTGATGTTCTCCTCGTTATCAACATTCTGTTCGCGATGGCTGAAGGTGCT
CTCCTCGTACCCAGTAACCTGTTACTATCTTCTATCCTTAAGCACAaaCA
AAAAGACAACCATGAAGAAGATGTTTGGGTCGTAGTAAAAGATAATTTGG
TTGCAGTTCTGAAGATCTTCCGAGAGATGTACATATTGGAGTTATTTATA
ATATCCATTGCACTAGGAATGGTTCATAGTTTTATGATAGGCGACATGAC
AAAGAATTTCGCAACATGTGCTTTTGGAATTCAATACATTGGTTATGTCA
TTATGTGCAGTGGGCTGGGAAACTGTCTGGCTGCTTTGACGGTTCATACA
CTCATTGAAAAGATCGGTATCTTCATCATCATTATGACGTCATGGGCATG
CGCGACTACCATCATgatcagtttttttttctggaatgtcGCATCATCTC
CTCCTGATGTTCTCCTCGTTATCAACATTCTGTTCGCGATGGCTGAAGGT
GCTCTCCTCGTACCCAGTAACCTGTTACTATCTTCTATCCTTAAGCACAa
aCAAAAAGACAACCATGAAGAAGATGTTTGGGTCGTAGTAAAAGATAATT
TGGTTGCAGTTCTGAAGATCTTCCGAGAGATGTACATATTGGAGTTATTT
ATAATATCCATTGCACTAGGAATGGTTCATAGTTTTATGATAGGCGACAT
GACAAAGAATTTCGCAACATGTGCTTTTGGAATTCAATACATTGGTTATG
TCATTATGTGCAGTGGGCTGGGAAACTGTCTGGCTGCTTTGACGGTTCAT
ACACTCATTGAAAAGATCGGTATCTTCATCATCATTATGACGTCATGGGC
ATGCGCGACTACCATCATgatcagtttttttttctggaatgtcGCATCAT
CTCCTCCTGATGTTCTCCTCGTTATCAACATTCTGTTCGCGATGGCTGAA
GGTGCTCTCCTCGTACCCAGTAACCTGTTACTATCTTCTATCCTTAAGCA
CAaaCAAAAAGACAACCATGAAGAAGATGTTTGGGTCGTAGTAAAAGATA
ATTTGGTTGCAGTTCTGAAGATCTTCCGAGAGATGTACATATTGGAGTTA
TTTATAATATCCATTGCACTAGGAATGGTTCATAGTTTTATGATAGGCGA
CATGACAAAGAATTTCGCAACATGTGCTTTTGGAATTCAATACATTGGTT
ATGTCATTATGTGCAGTGGGCTGGGAAACTGTCTGGCTGCTTTGACGGTT
CATACACTCATTGAAAAGATCGGTATCTTCATCATCATTATGACGTCATG
GGCATGCGCGACTACCATCATgatcagtttttttttctggaatgtcGCAT
CATCTCCTCCTGATGTTCTCCTCGTTATCAACATTCTGTTCGCGATGGCT
GAAGGTGCTCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016958-exon-sc0000255-1491911889:208924..208968 | TCONS_00016958-exon-sc0000255-1491911889:208924..208968 | Clytia hemisphaerica | exon |
| TCONS_00016958-exon-sc0000255-1510915933:208924..208968 | TCONS_00016958-exon-sc0000255-1510915933:208924..208968 | Clytia hemisphaerica | exon |
| TCONS_00016958-exon-sc0000255-1575043694:208924..208968 | TCONS_00016958-exon-sc0000255-1575043694:208924..208968 | Clytia hemisphaerica | exon |
| TCONS_00016958-exon-sc0000255-1491911889:210011..210168 | TCONS_00016958-exon-sc0000255-1491911889:210011..210168 | Clytia hemisphaerica | exon |
| TCONS_00016958-exon-sc0000255-1510915933:210011..210168 | TCONS_00016958-exon-sc0000255-1510915933:210011..210168 | Clytia hemisphaerica | exon |
| TCONS_00016958-exon-sc0000255-1575043694:210011..210168 | TCONS_00016958-exon-sc0000255-1575043694:210011..210168 | Clytia hemisphaerica | exon |
| TCONS_00016958-exon-sc0000255-1491911889:211519..211626 | TCONS_00016958-exon-sc0000255-1491911889:211519..211626 | Clytia hemisphaerica | exon |
| TCONS_00016958-exon-sc0000255-1510915933:211519..211626 | TCONS_00016958-exon-sc0000255-1510915933:211519..211626 | Clytia hemisphaerica | exon |
| TCONS_00016958-exon-sc0000255-1575043694:211519..211626 | TCONS_00016958-exon-sc0000255-1575043694:211519..211626 | Clytia hemisphaerica | exon |
| TCONS_00016958-exon-sc0000255-1491911889:212722..212865 | TCONS_00016958-exon-sc0000255-1491911889:212722..212865 | Clytia hemisphaerica | exon |
| TCONS_00016958-exon-sc0000255-1510915933:212722..212865 | TCONS_00016958-exon-sc0000255-1510915933:212722..212865 | Clytia hemisphaerica | exon |
| TCONS_00016958-exon-sc0000255-1575043694:212722..212865 | TCONS_00016958-exon-sc0000255-1575043694:212722..212865 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000255 | supercontig | sc0000255:208924..212865 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR020846 | MFS_dom |
Blast
The following BLAST results are available for this feature:
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