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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016924 ID=TCONS_00016924|Name=TCONS_00016924|organism=Clytia hemisphaerica|type=transcript|length=2926bpRun BLAST on NCBI protein sequence of TCONS_00016924-protein >TCONS_00016924-protein ID=TCONS_00016924-protein|Name=TCONS_00016924-protein|organism=Clytia hemisphaerica|type=polypeptide|length=584bp MSFRSWIELESDPGLFTLLVYDFGVKGVEVEEIYDLSTQMEKHVFGLIFLRun BLAST on NCBI transcript from alignment at sc0000254:351793..393944+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016924 ID=TCONS_00016924|Name=TCONS_00016924|organism=Clytia hemisphaerica|type=transcript|length=42152bp|location=Sequence derived from alignment at sc0000254:351793..393944+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000254:351793..393944+ >TCONS_00016924 ID=TCONS_00016924|Name=TCONS_00016924|organism=Clytia hemisphaerica|type=CDS|length=24570bp|location=Sequence derived from alignment at sc0000254:351793..393944+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00016924 vs. Swiss-Prot (Human)
Match: BAP1 (Ubiquitin carboxyl-terminal hydrolase BAP1 OS=Homo sapiens GN=BAP1 PE=1 SV=2) HSP 1 Score: 335.109 bits (858), Expect = 9.740e-101 Identity = 152/260 (58.46%), Postives = 196/260 (75.38%), Query Frame = 1
Query: 151 RSWIELESDPGLFTLLVYDFGVKGVEVEEIYDLSTQMEKHVFGLIFLFKWTEERKTRRKAVVL--EETFADEKVENEMFFAQQIIPNSCASHALLSVLLNVPDVSLGYTLKQLRDSCKGFDSESKGYAIGNFWNLSVAHNNHGRAEQRWSTDRTKNLTAVRSMEAFHYVSYIPYKGRLLELDGLKAHPIDHGPWLDNENWTDKARRVIQDRIAFATGGELSHDIRYNLMAVVPEQRHLFKDKIDILRHNKKVLIEGFKNL 924
+ W+ELESDPGLFTLLV DFGVKGV+VEEIYDL ++ + V+G IFLFKW EER++RRK L + + D+ + N MFFA Q+IPNSCA+HALLSVLLN V LG TL +++D KGF ESKGYAIGN L+ AHN+H R E R ++ L+AVR+MEAFH+VSY+P GRL ELDGLK +PIDHGPW ++E WTDKARRVI +RI AT GE HDIR+NLMAVVP++R ++ ++ +L+ N++ ++E + L
Sbjct: 3 KGWLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKCQGPVYGFIFLFKWIEERRSRRKVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVDLGPTLSRMKDFTKGFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVSYVPITGRLFELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMAVVPDRRIKYEARLHVLKVNRQTVLEALQQL 262 The following BLAST results are available for this feature:
BLAST of TCONS_00016924 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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