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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016405 ID=TCONS_00016405|Name=TCONS_00016405|organism=Clytia hemisphaerica|type=transcript|length=1312bp
GAAAAAGTCCCAGGCTCTTGGAAGTGGGACTTCCGATTGGTATAAAAGGG
GAAGCTTTAGTTTCCAATCAGAGTAGatcaaaatatcaacattttggGAG
AAGAGCATTGAGAACTACAgaagaaaatccattttttcgaCCTTATTTGT
TATTCACAAAGTCACTCACCTGAGaaataaaGATTATACGAAGCAAAAAT
TGTATCAAAActgcaaaacaaaaaacaagcaaagaaatcaaaatgatgaa
atcaaCAATACTATCAGTCATCTTTGTAATCGCTATGGCAACCATTCAAA
CAACAGAGGGCCGTCCCCAACAAGCTTCGTCCTCGGGCTATTATGACCTA
TGTCCACTTTATATTGGCGACGAATGTGCTAACTGCTGCGAGTCTGGATA
TCAAGATTGCATTCTGAACCTACCTTATGACAACCCAGGAGACTTTGCAA
AATGCACTCCTGACCGCACTGCTTGTCACAATAAAATATGTGCATCATCA
TAACCTGATTGTAAAGTAATGATCCATTTAAGCACGTTCAACGAACACCT
GTTATCAGGCGATGATACGTGTGTTATCTTTTGTATAACACAAAAAGGTC
AACAAATAAACTCTGCTTATGAATTTATTCTTTCGATGATTCATTTTATC
AACACCCTcgtcaaatcaaaatttataagGCCCTGAGAAATTCGAACTAA
GAAAACTCGTACTCAGTCTTTTAGTTTGTGTTCAATCTATTCGCcatagt
tttattaaaaaatcaaaatttatttcatagtAAAAGCTCTTCGGCTACGC
CATCGTCAGTActcttttagtttatttttgtgattttgaaagATTCACAT
GTGACTAAATTACAGTTTTATTTTATCGAGTTCAACCTTTGTTTTAAACG
TCATGGGTTCGAGGGTGCATCTTTTGTATGTAGttttatttcttctttct
ttatttcACTGCTGAAATTCAAAATCTCTGAAATCTAGGATACGTTTGAG
CGCAGATAGAGGAGGAAAACGGGTTAGCCGGTATACCCTGTTTTCTAAGA
TTTAACTCTTTAACTAAGGTAAAAATCAAAGCTAGATTTCTTTtaaacca
aaatttattttcaaagcttAATTTCAAAAACTGTTCCTTTGCACTTTATA
TTTTCTCTCCATACCGCTTATGATTCCAAcaataaaattattatttttaa
tttatcgTGTCATGTAAATTTACCCTTAGgttgtatatatttttgttcCC
TCTATACACtatgaaaaatattgtaaatacACTTAATTTGCTTAAAATGC
AAAGATTTCTTG Run BLAST on NCBI transcript from alignment at sc0000237:155589..164930+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016405 ID=TCONS_00016405|Name=TCONS_00016405|organism=Clytia hemisphaerica|type=transcript|length=9342bp|location=Sequence derived from alignment at sc0000237:155589..164930+ (Clytia hemisphaerica)
GAAAAAGTCCCAGGCTCTTGGAAGTGGGACTTCCGATTGGTATAAAAGGG
GAAGCTTTAGTTTCCAATCAGAGTAGatcaaaatatcaacattttggGAG
AAGAGCATTGAGAACTACAgaagaaaatccattttttcgaCCTTATTTGT
TATTCACAAAGTCACTCACCTGAGGTAAGTTATTTTGTAGACTCTTACCC
CCTGAAGgacggtctccacttgcgcgcactacaatcgcactttttcgagc
aaagattccacgctattggtcaaaaaaaaaaatgaagcaactccattggc
gcgatctgacgtaacggttgaaaaaagttgaaatgtgtacACATGTTCAA
CTTTTCTTTCGAGCGTGCGCTATATTTTTATGacataatcttttttccaa
gcaaaaaggattgaagccaaaaagtgcggttgagcgcgcgcaagtggaga
ccggccttgaCATCCCCGTTTCAAAGACTTGTTTGATACTCTCCTTCCCA
CTGAAAATGAAACTTAACTTTTCAACTTggacattttttataagaacaaa
ctatatataagATCATAAGGCCTggatttccaaaattttaagaacaattt
aagaacattttaaagcttcgtGGATTCTAAAAcgcccgatttcttaggaa
aatggaaaaaaatactcCCAAAATGGTGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNattaaattagaagaatga
cgGTAATTGGTAtctagttttttttcatttcatcccaTACCGTCAAAATG
ATTCATAACGGGGGCGATTGAGGTAAGGGTGTCACCGGGACAATTCGTCA
AAACAGCATTCGTCTAAAACCCAATGTCAAGTCCCAAAGTTGGAAAacac
tggcggatttaagacaatagcgagtttatgtattcgagataaatcgaggg
ggacggtataaagcaaagttgacatgtctccaaaatcaccatccactttg
ctcgacgacggtaaaaacaccaaaatgccgtcgtctgtttaggcaATTTA
GAGCCGTACATcgactatcgactttgttttgtatcgatttcactaactgt
catatcctccgatacataaacgaAGGAAATATGCAAAgaagtgcaacgct
cgttaaaagacaatgaagtTACAGTTACAAACCTCTtcatctgataagtt
cgacatggcCTAAAACCGCCTATGCAAAACACAAACCGATGTCAAGTTCC
AAAGTTGCAAAACACAAACTTTAGTGTCAAATTTAGAGAGAGGATAATAG
CGTTAGAGCAAGTTCCTTGATTAAGCCCGGTCTCCaatttcgcgcgacat
gagtgAAAaccttttgacgtttttgtaaggtcattggtcggttgaaaaat
gaagcaattccattggtcgaaattgatgtaacggatgaaaaagtcatttt
cctctatatttttttttgttcgcgtgaaacttttttatgacgtaatcttt
tcttcaggcaaaaaagggttaagaaaaaaactgtcaccCATTTCAcgtga
aagtggagaccggcctttagaggAAGGCTGTTTAAtgtcaaaaggagaaa
aaaCCGAGACTTTCGGTCCAAACGcgtgaaaaaagttttcaaacatTATA
ACGCCTCTTTACAATAATGGTATGCCCAGGCAAGAAAATTAGGTATAAGT
GTGACTTGAGATGACCTCCCAGATAAATGACCTGGTTTATAAACTTATAT
TTCGAGTTCAAAAGAAATTACTTTCTGAAATTCTATAACAGTCTCTTACG
AAACCAAAAAGGAATTTCATCAACGTATTGCTGATGGATGAaagcaaaaa
catttaaaaaaatgaccttttcactttgaaaatatGTTATTGGCTTAATC
GCCATACACCTAGTACTGACAAAAAACATCCGCGGTGGAGGTCTCAAAAT
CCTTATTGATATTGTTTCTAGCGAATGCTTATCTCCACCAGGGAGGTTTC
TTCTTTGGATCTGTGCACCAACCGGCTATCAATGAACATAACATTTTACA
ATAATTTTACTATGGGTTTTCAAAGGTAGTCACAGAAAAAGTTGTTGGAT
GGAAAGTTAAAAGGTTTAAATTCTGATCATTAAAATTTGACTTTAATTTG
ATGCCTAATTTTGCTAAATACTACAGAAGCTTGAATTTGCAGTCACTGTC
AAGAAATATCTCAAATAATCACGACAGGATGCTGACTCTAAATTTCGACC
AAGATTCTGTTTGGGAAACTCGGGAAACTCGTTCGTTACTTGtatgacct
cgggcaatatttcttaGTGTAGCCCTTagaaaccggtcattattgtatta
ctGTAGCATCACGTAAAATTTAGTTTCGAAAATTGAAACTCTGTATCATA
AAACTATTTCGGATTATCAACGcgtgagaaaaaatttattaacTTCCTCG
TTTGAATTTGTCGAAAGTGTTTTCCCATGTTTTGGTTTTGCGGTTTTTAA
ACCACACGCGTTGTACATTTAAAAACGTTGGTCGTTGTAGAATTGCTAGT
CTTAGTAAGTAAGTTTGTAAAAGCAGTCGGGAACGACCCTAAGTAGGCTC
CTTTTCCGTAATTATCCATCAGAAGGTagaggagggcgccactctttctc
cctggattactCTACTTACTcatgatccttctcttaattgctgagcatca
agcagagaggcatcaagtaccatttttagtctatgTCATGACCCAGCAAG
GGGGTTAAACCCACTACCCTGCGCACCATAACCTTTTTGTAACTTATAGA
GAAGGTTTTTTGGCTAATCCTATGGTCAATTGACAGATACATGAAATAAA
AACGAGAAAACGACTATGAGCACGAGACTGCATTTCAAGTATATTCCGAT
TCAAGACGTACCTAATTTTCGACATCTAGATGGTCGGCAAAATCATAAGG
CTGTTTCCACGTTAGCACTCTTAAGTCTGATTTGCGTGGACTTTGAATCA
TCCAGCATCCGTAACGAGTTTTCTTTTACGCGAAAAATGATTTCTAGAAT
TGTTGTCATAAGATATTGTCTAAGTCTTTATCTTTTTGAAGATTTGAGGC
ACGCGAAGCATACATAGGGTGGTCTTTGCTCTCTATAAATGAATAAGATG
AAACATATAGTCTTTTCTTCAGATGCTTTTCATCTCATCAGACTCAGGAA
GACACTAACCAAACAACACGTACTCGATAAGTGAAAATCTCGTTGCCGTC
GACTGTTATTCAAACTATGACCACGTTTTTTGTCGAATAAACTACAAAAA
TACATTAACTTCCGATGCCGTTTATGATTTGACAATCCGATAACTGCCTC
CGTACGAACAATTCATTGATGCCAACAATCATTCTAGCTACTTTTGCCTC
AGGCTTACTACAGTTGAGACTCTTTAACTCGAAAACACACACAGACATGT
agatttgttcgaattatggagtcAGGTTcacaaaaaagaaattcttcgGG
CAAAAAACTTTAGATCTTAGAGAGAGAGgaaaaattggtgattttgggat
ccttaaagagacttttcccaaaatttttgtcgattttcactcgattttct
atccaaattttggaaaatcacgaccctttgagagaggaaatttcGATGAA
TTTTAAATCCTTACAGAAactcaatttgctttttaatggtttttgtaccc
tttTGAGATATTTTCGAGGATGTGAAAAAGAGACCCTTATGGCTTGCACA
GCTCGAGAAACAGCTGAGTTTCGACAAACATTTCTAAAACGTTTTTCGTT
GTGAAAGGTCATTAAAGTTCCCTTAGATGATGGTTATATTCGGACTTATT
GTTGTTTATCATATTTTATCAAATTGTCTGGTTTTGCTGGTTTTTAAAGT
ACCCCCGTAAAGCTATTTaacttgtttttgaaaataaaatgtcgCTATTT
TTACCGACTCCCTGACACTGTCTGACTTTTTAGCACTGACTTCCTCTTAT
CCTTATAGTCTACAAGCCGACAGTATGGTCGCAAAATACCGTATCATTTC
ACATTTGTGCCTTATGTTTGCCAGGAAAAGTTTTTGCAGATGACTCTTTG
TTAACAAACTCATCAGTGCTAAGCACCTACaagtctttttataagaacat
taaaatGAGTTAAAGCCTTGGGGTTCTTAACCAGTTGAGtttttaatctg
aaaatattcGTATGGTGGTCTTATTTTTATCATTCTGTGAGTATTTTAGT
GTAACTTTCTTAGAAATTGTAAGGTCTAAGGCCCACAAAGCCTTGAATTT
TCATGTAGTCTGATGTTCttatatgatctgttcttacaGAAAGAAGAGTA
GCACGGTGGAGATTTTTTTAGTATTCCTTATATGTCATCTTTGACTTTAA
CCTTACCTTCCACCGTAGTTGCTTTTTGACGTctgaaaattttccccgtc
GGTATTTTAAGATTTGTTATTCTAcgtcaaaaatgtttttcatggtATGA
CGGTAGAACTTCATTGAAGTCAAGCTTGGGAAGGAAGCGCTATCTTATTT
ATATCATATTTTATCGTCACTTAAAAAACACACGCGCGCTACTTCTCTAT
TCGTCTAATCATTCAAAAATCTGAAAGACGTTATTTGCTTTTAGCATGCG
GTAGTAGAGAGTCTTGGTTGTGAATGGAGGACTATAAATTGTTGGAATGG
TTTTGATTTCTAATATCATTCCGTGCCAGTGTTAATGAGATATGGAGTGG
TAAAATAAGTGTGAGTGGTACAACACAATAAGATTTGGGTAGTTTCCAGA
CTGGTATTTGCTAAACTAAAAGATTGGTAGGCTTTGGTAGCTTTGGTAGG
TTCTTCTATCAGGAGTATATGAGGAAACTGAGTTAGGTTTTAGAAAGGTT
GAACAATGTCAATTATCTTTCTATCTGTTAGTACATCAAAAAGCAATTCG
ACTTAATGAGTTATAATCAAtgccataatatttgagaaaaaagggaaaat
ttcgcacgaaatcttacaacggcgaacgatttggaagcgctctaaattag
gttagacGAGGTCGATGGTTAAacaggtagagttttaactctaagtttta
acgctagacttaaaacttaggatctgaggagctaaaagtccaaaaatggt
ccaatagggctcacaATATAGCCTAGAAGTTTATAAACCCCTcttgaatt
gaaatattcgaataaatttatcaatttgcccaaaagcgATTATTTCGCCC
GAACTTTATGAATTACTGAAAACGatgaattaaccaaaattcccaatata
ttttgaccgagattgtagTTAAGCCTTGGCCCTTTTTATTTGTATTAGCA
GGGATTGATAGACACAATTAGACATAAACAACTatctgaaagttttttac
tttaaaaaagtaTAGAATGACCAGCAAGTGATTTGAATAATCTGCAAGCA
CAATTTCACATTCTAAAGTTTCACCTGATATATGATTTTTCACTAGTATT
CCTTTAGTTTTACCCAATTTTACCTAATACCGTGTCGGAGAAGCATGATT
GTGATTCTAGGAGTCCCATATTTTCTTAGACTGTagaatctctataactc
gaacgcTTTTTATAAATCGAAAGGTTTCGTTGCCCCATGATTTTATATGA
TTGATAACTGATATAATTTTATATATAGTCTAAATGAATGCCCATGAATG
GTATTGCCACATAAAATTTTGGTTAGGTAGGTTTCAAATCCCTCCATTTC
AGACCTTTTCTGACAATAGTGATTTAGACAttctaaataaaaatattcgG
CATTAGATCCGTGTGAGTTCAGACTTTCCAAATTTAGGTCCAAACCGAAT
TAAATTACATCTTGCGATATCTCatgatatcaaaatcaaaatcacagCTC
GTTTATATCAATACATTCCGgagattttaagtttttaaaaaatcctTGAA
TTTAAGCATATGTCAAAGACATGATAAAATTACAAAGGAACTTTAAACTA
GTATTTTATAATGGTATAAAAACGTGTGATCTATTCATATTGAGCGGGAA
AGCGTATCTGGTTTCAGAGCTATATAAGTAGAAATTTTTAACAGCATCTC
AGCACTAAAGTTAAAGGAGGAATCAGAGCGGCAAGAAAATCCGCACattg
aagtttttgaaattaattACTTGAGAGAGTTAGAGATTTAGGGATAGGGT
TATTAGTGTGAGATTCAAGAATCTTTAGAAATATTCAGTCAATAGTTact
cattttgattttttgcgtaCCTTATCGggcaaaacttagtcggccttaat
tttagtcggccttaattattagtcggccctaattttagtcacctcgtcaa
aatttagtcactcaGGGCCAACTAAGGGGTTCTATTTACAGTTAATTTga
accaaatttttagtcggccctaattttagtcaccaagtcaaaatttagtc
acttacatacatacatacataactTCATCCCTCTCAGCGAGAGGGTGAAG
CTATTCGGCATTAgattagtcacttagggccgactaagttttggccgata
aggtatatgacAAACGACCTATTTCGTGCGCTAGTCGATCACCTATCGAA
AAGTGCAAAGCTCATCTAAGCGGAATAAAGATGACTTTAGAGggttttta
gtgatttttgcTGACACAGCATTTGGAATGTGAATCACGTCCCCTAAGTC
AATATTTTTCGAACTTTCCAGTGACCCCGGTCtttgtgaaaatgatttct
tagAGTGTTTTAGtcgtgggaaatttttattcccaGTTTGGTCTTAATCA
AGTCAAACTACAAAAAAGAAACAGGCATTCTCACTCCGATGTTAGAATGT
CATTTCAACAAAACTCATTGACGCGcccttttttatcaaattcattGTAT
TGCGTAACCTCTCAAGAGTTGTTTTTGCGAAGATCGGCATTTCTCAAAAG
AAATATCACATAGACcctatttctttttcattcggCAAGACGTTTTTGTC
AATAGCATTTTATTTTTGTCACTTATTTATATTGCGAACAGTACTTAaag
taaacaattttttttatatgtgCCTATTAAAATTTGGGTATAAATTGACC
GTTATAAAACTTTTAACGGCCATTACTagtcttaattttttgagtccGTC
GAGAACACTTGGGAGCGACAATAGAGAGCTTAAAGATAGCaaagtagagt
ctccataactcgaacctggACAGTGAAcacgaatttgttcgagttatgga
gtaaggtttataaggtatAGCTGACGGGACTAGAAAAATTGTTCGAAGTA
AGGAGACGTTCGAGTTATAtaagttcgagttaaagagactgttTATTGAT
TTTCCAATTGAGTCATGAAGATGATGAGTGAGCCTGTGTAGCATTAAAAG
CTGATACAAACGGGCTTGTGGAGAATCCATCATCAATTTTCACCACCACT
TTGTGAAAGGAGGTTTACTTTGTCTTTGAAGGAGGGTTGTATTttcctaa
atattttcattttcctagatGGAAATCTATAAATAttcattcttcttttt
tcagaaataaaGATTATACGAAGCAAAAATTGTATCAAAActgcaaaaca
aaaaacaagcaaagaaatcaaaatgatgaaatcaaCAATACTATCAGTCA
TCTTTGTAATCGCTATGGCAACCATTCAAACAACAGAGGGCCGTCCCCAA
CAAGCTTCGTCCTCGGGCTATTATGACCTATGTCCACTTTATATTGGCGA
CGAATGTGCTAACTGCTGCGAGTCTGGATATCAAGATTGCATTCTGAACC
TACCTTATGACAACCCAGGAGACTTTGCAAAATGCACTCCTGACCGCACT
GCTTGTCACAATAAAATATGTGCATCATCATAACCTGATTGTAAAGTAAT
GATCCATTTAAGCACGTTCAACGAACACCTGTTATCAGGCGATGATACGT
GTGTTATCTTTTGTATAACACAAAAAGGTCAACAAATAAACTCTGCTTAT
GAATTTATTCTTTCGATGATTCATTTTATCAACACCCTcgtcaaatcaaa
atttataagGCCCTGAGAAATTCGAACTAAGAAAACTCGTACTCAGTCTT
TTAGTTTGTGTTCAATCTATTCGCcatagttttattaaaaaatcaaaatt
tatttcatagtAAAAGCTCTTCGGCTACGCCATCGTCAGTActcttttag
tttatttttgtgattttgaaagATTCACATGTGACTAAATTACAGTTTTA
TTTTATCGAGTTCAACCTTTGTTTTAAACGTCATGGGTTCGAGGGTGCAT
CTTTTGTATGTAGttttatttcttctttctttatttcACTGCTGAAATTC
AAAATCTCTGAAATCTAGGATACGTTTGAGCGCAGATAGAGGAGGAAAAC
GGGTTAGCCGGTATACCCTGTTTTCTAAGATTTAACTCTTTAACTAAGGT
AAAAATCAAAGCTAGATTTCTTTtaaaccaaaatttattttcaaagcttA
ATTTCAAAAACTGTTCCTTTGCACTTTATATTTTCTCTCCATACCGCTTA
TGATTCCAAcaataaaattattatttttaatttatcgTGTCATGTAAATT
TACCCTTAGgttgtatatatttttgttcCCTCTATACACtatgaaaaata
ttgtaaatacACTTAATTTGCTTAAAATGCAAAGATTTCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016405-exon-sc0000237-1491911889:155589..155762 | TCONS_00016405-exon-sc0000237-1491911889:155589..155762 | Clytia hemisphaerica | exon |
| TCONS_00016405-exon-sc0000237-1510915933:155589..155762 | TCONS_00016405-exon-sc0000237-1510915933:155589..155762 | Clytia hemisphaerica | exon |
| TCONS_00016405-exon-sc0000237-1575043694:155589..155762 | TCONS_00016405-exon-sc0000237-1575043694:155589..155762 | Clytia hemisphaerica | exon |
| TCONS_00016405-exon-sc0000237-1491911889:163793..164930 | TCONS_00016405-exon-sc0000237-1491911889:163793..164930 | Clytia hemisphaerica | exon |
| TCONS_00016405-exon-sc0000237-1510915933:163793..164930 | TCONS_00016405-exon-sc0000237-1510915933:163793..164930 | Clytia hemisphaerica | exon |
| TCONS_00016405-exon-sc0000237-1575043694:163793..164930 | TCONS_00016405-exon-sc0000237-1575043694:163793..164930 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000237 | supercontig | sc0000237:155589..164930 + |
Blast
The following BLAST results are available for this feature:
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