XLOC_009164 (gene) - C. hemisphaerica

Overview
NameXLOC_009164
Unique NameXLOC_009164
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000237:155589..164930+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_009164 ID=XLOC_009164|Name=XLOC_009164|organism=Clytia hemisphaerica|type=gene|length=9342bp|location=Sequence derived from alignment at sc0000237:155589..164930+ (Clytia hemisphaerica)
GAAAAAGTCCCAGGCTCTTGGAAGTGGGACTTCCGATTGGTATAAAAGGG
GAAGCTTTAGTTTCCAATCAGAGTAGatcaaaatatcaacattttggGAG
AAGAGCATTGAGAACTACAgaagaaaatccattttttcgaCCTTATTTGT
TATTCACAAAGTCACTCACCTGAGGTAAGTTATTTTGTAGACTCTTACCC
CCTGAAGgacggtctccacttgcgcgcactacaatcgcactttttcgagc
aaagattccacgctattggtcaaaaaaaaaaatgaagcaactccattggc
gcgatctgacgtaacggttgaaaaaagttgaaatgtgtacACATGTTCAA
CTTTTCTTTCGAGCGTGCGCTATATTTTTATGacataatcttttttccaa
gcaaaaaggattgaagccaaaaagtgcggttgagcgcgcgcaagtggaga
ccggccttgaCATCCCCGTTTCAAAGACTTGTTTGATACTCTCCTTCCCA
CTGAAAATGAAACTTAACTTTTCAACTTggacattttttataagaacaaa
ctatatataagATCATAAGGCCTggatttccaaaattttaagaacaattt
aagaacattttaaagcttcgtGGATTCTAAAAcgcccgatttcttaggaa
aatggaaaaaaatactcCCAAAATGGTGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNattaaattagaagaatga
cgGTAATTGGTAtctagttttttttcatttcatcccaTACCGTCAAAATG
ATTCATAACGGGGGCGATTGAGGTAAGGGTGTCACCGGGACAATTCGTCA
AAACAGCATTCGTCTAAAACCCAATGTCAAGTCCCAAAGTTGGAAAacac
tggcggatttaagacaatagcgagtttatgtattcgagataaatcgaggg
ggacggtataaagcaaagttgacatgtctccaaaatcaccatccactttg
ctcgacgacggtaaaaacaccaaaatgccgtcgtctgtttaggcaATTTA
GAGCCGTACATcgactatcgactttgttttgtatcgatttcactaactgt
catatcctccgatacataaacgaAGGAAATATGCAAAgaagtgcaacgct
cgttaaaagacaatgaagtTACAGTTACAAACCTCTtcatctgataagtt
cgacatggcCTAAAACCGCCTATGCAAAACACAAACCGATGTCAAGTTCC
AAAGTTGCAAAACACAAACTTTAGTGTCAAATTTAGAGAGAGGATAATAG
CGTTAGAGCAAGTTCCTTGATTAAGCCCGGTCTCCaatttcgcgcgacat
gagtgAAAaccttttgacgtttttgtaaggtcattggtcggttgaaaaat
gaagcaattccattggtcgaaattgatgtaacggatgaaaaagtcatttt
cctctatatttttttttgttcgcgtgaaacttttttatgacgtaatcttt
tcttcaggcaaaaaagggttaagaaaaaaactgtcaccCATTTCAcgtga
aagtggagaccggcctttagaggAAGGCTGTTTAAtgtcaaaaggagaaa
aaaCCGAGACTTTCGGTCCAAACGcgtgaaaaaagttttcaaacatTATA
ACGCCTCTTTACAATAATGGTATGCCCAGGCAAGAAAATTAGGTATAAGT
GTGACTTGAGATGACCTCCCAGATAAATGACCTGGTTTATAAACTTATAT
TTCGAGTTCAAAAGAAATTACTTTCTGAAATTCTATAACAGTCTCTTACG
AAACCAAAAAGGAATTTCATCAACGTATTGCTGATGGATGAaagcaaaaa
catttaaaaaaatgaccttttcactttgaaaatatGTTATTGGCTTAATC
GCCATACACCTAGTACTGACAAAAAACATCCGCGGTGGAGGTCTCAAAAT
CCTTATTGATATTGTTTCTAGCGAATGCTTATCTCCACCAGGGAGGTTTC
TTCTTTGGATCTGTGCACCAACCGGCTATCAATGAACATAACATTTTACA
ATAATTTTACTATGGGTTTTCAAAGGTAGTCACAGAAAAAGTTGTTGGAT
GGAAAGTTAAAAGGTTTAAATTCTGATCATTAAAATTTGACTTTAATTTG
ATGCCTAATTTTGCTAAATACTACAGAAGCTTGAATTTGCAGTCACTGTC
AAGAAATATCTCAAATAATCACGACAGGATGCTGACTCTAAATTTCGACC
AAGATTCTGTTTGGGAAACTCGGGAAACTCGTTCGTTACTTGtatgacct
cgggcaatatttcttaGTGTAGCCCTTagaaaccggtcattattgtatta
ctGTAGCATCACGTAAAATTTAGTTTCGAAAATTGAAACTCTGTATCATA
AAACTATTTCGGATTATCAACGcgtgagaaaaaatttattaacTTCCTCG
TTTGAATTTGTCGAAAGTGTTTTCCCATGTTTTGGTTTTGCGGTTTTTAA
ACCACACGCGTTGTACATTTAAAAACGTTGGTCGTTGTAGAATTGCTAGT
CTTAGTAAGTAAGTTTGTAAAAGCAGTCGGGAACGACCCTAAGTAGGCTC
CTTTTCCGTAATTATCCATCAGAAGGTagaggagggcgccactctttctc
cctggattactCTACTTACTcatgatccttctcttaattgctgagcatca
agcagagaggcatcaagtaccatttttagtctatgTCATGACCCAGCAAG
GGGGTTAAACCCACTACCCTGCGCACCATAACCTTTTTGTAACTTATAGA
GAAGGTTTTTTGGCTAATCCTATGGTCAATTGACAGATACATGAAATAAA
AACGAGAAAACGACTATGAGCACGAGACTGCATTTCAAGTATATTCCGAT
TCAAGACGTACCTAATTTTCGACATCTAGATGGTCGGCAAAATCATAAGG
CTGTTTCCACGTTAGCACTCTTAAGTCTGATTTGCGTGGACTTTGAATCA
TCCAGCATCCGTAACGAGTTTTCTTTTACGCGAAAAATGATTTCTAGAAT
TGTTGTCATAAGATATTGTCTAAGTCTTTATCTTTTTGAAGATTTGAGGC
ACGCGAAGCATACATAGGGTGGTCTTTGCTCTCTATAAATGAATAAGATG
AAACATATAGTCTTTTCTTCAGATGCTTTTCATCTCATCAGACTCAGGAA
GACACTAACCAAACAACACGTACTCGATAAGTGAAAATCTCGTTGCCGTC
GACTGTTATTCAAACTATGACCACGTTTTTTGTCGAATAAACTACAAAAA
TACATTAACTTCCGATGCCGTTTATGATTTGACAATCCGATAACTGCCTC
CGTACGAACAATTCATTGATGCCAACAATCATTCTAGCTACTTTTGCCTC
AGGCTTACTACAGTTGAGACTCTTTAACTCGAAAACACACACAGACATGT
agatttgttcgaattatggagtcAGGTTcacaaaaaagaaattcttcgGG
CAAAAAACTTTAGATCTTAGAGAGAGAGgaaaaattggtgattttgggat
ccttaaagagacttttcccaaaatttttgtcgattttcactcgattttct
atccaaattttggaaaatcacgaccctttgagagaggaaatttcGATGAA
TTTTAAATCCTTACAGAAactcaatttgctttttaatggtttttgtaccc
tttTGAGATATTTTCGAGGATGTGAAAAAGAGACCCTTATGGCTTGCACA
GCTCGAGAAACAGCTGAGTTTCGACAAACATTTCTAAAACGTTTTTCGTT
GTGAAAGGTCATTAAAGTTCCCTTAGATGATGGTTATATTCGGACTTATT
GTTGTTTATCATATTTTATCAAATTGTCTGGTTTTGCTGGTTTTTAAAGT
ACCCCCGTAAAGCTATTTaacttgtttttgaaaataaaatgtcgCTATTT
TTACCGACTCCCTGACACTGTCTGACTTTTTAGCACTGACTTCCTCTTAT
CCTTATAGTCTACAAGCCGACAGTATGGTCGCAAAATACCGTATCATTTC
ACATTTGTGCCTTATGTTTGCCAGGAAAAGTTTTTGCAGATGACTCTTTG
TTAACAAACTCATCAGTGCTAAGCACCTACaagtctttttataagaacat
taaaatGAGTTAAAGCCTTGGGGTTCTTAACCAGTTGAGtttttaatctg
aaaatattcGTATGGTGGTCTTATTTTTATCATTCTGTGAGTATTTTAGT
GTAACTTTCTTAGAAATTGTAAGGTCTAAGGCCCACAAAGCCTTGAATTT
TCATGTAGTCTGATGTTCttatatgatctgttcttacaGAAAGAAGAGTA
GCACGGTGGAGATTTTTTTAGTATTCCTTATATGTCATCTTTGACTTTAA
CCTTACCTTCCACCGTAGTTGCTTTTTGACGTctgaaaattttccccgtc
GGTATTTTAAGATTTGTTATTCTAcgtcaaaaatgtttttcatggtATGA
CGGTAGAACTTCATTGAAGTCAAGCTTGGGAAGGAAGCGCTATCTTATTT
ATATCATATTTTATCGTCACTTAAAAAACACACGCGCGCTACTTCTCTAT
TCGTCTAATCATTCAAAAATCTGAAAGACGTTATTTGCTTTTAGCATGCG
GTAGTAGAGAGTCTTGGTTGTGAATGGAGGACTATAAATTGTTGGAATGG
TTTTGATTTCTAATATCATTCCGTGCCAGTGTTAATGAGATATGGAGTGG
TAAAATAAGTGTGAGTGGTACAACACAATAAGATTTGGGTAGTTTCCAGA
CTGGTATTTGCTAAACTAAAAGATTGGTAGGCTTTGGTAGCTTTGGTAGG
TTCTTCTATCAGGAGTATATGAGGAAACTGAGTTAGGTTTTAGAAAGGTT
GAACAATGTCAATTATCTTTCTATCTGTTAGTACATCAAAAAGCAATTCG
ACTTAATGAGTTATAATCAAtgccataatatttgagaaaaaagggaaaat
ttcgcacgaaatcttacaacggcgaacgatttggaagcgctctaaattag
gttagacGAGGTCGATGGTTAAacaggtagagttttaactctaagtttta
acgctagacttaaaacttaggatctgaggagctaaaagtccaaaaatggt
ccaatagggctcacaATATAGCCTAGAAGTTTATAAACCCCTcttgaatt
gaaatattcgaataaatttatcaatttgcccaaaagcgATTATTTCGCCC
GAACTTTATGAATTACTGAAAACGatgaattaaccaaaattcccaatata
ttttgaccgagattgtagTTAAGCCTTGGCCCTTTTTATTTGTATTAGCA
GGGATTGATAGACACAATTAGACATAAACAACTatctgaaagttttttac
tttaaaaaagtaTAGAATGACCAGCAAGTGATTTGAATAATCTGCAAGCA
CAATTTCACATTCTAAAGTTTCACCTGATATATGATTTTTCACTAGTATT
CCTTTAGTTTTACCCAATTTTACCTAATACCGTGTCGGAGAAGCATGATT
GTGATTCTAGGAGTCCCATATTTTCTTAGACTGTagaatctctataactc
gaacgcTTTTTATAAATCGAAAGGTTTCGTTGCCCCATGATTTTATATGA
TTGATAACTGATATAATTTTATATATAGTCTAAATGAATGCCCATGAATG
GTATTGCCACATAAAATTTTGGTTAGGTAGGTTTCAAATCCCTCCATTTC
AGACCTTTTCTGACAATAGTGATTTAGACAttctaaataaaaatattcgG
CATTAGATCCGTGTGAGTTCAGACTTTCCAAATTTAGGTCCAAACCGAAT
TAAATTACATCTTGCGATATCTCatgatatcaaaatcaaaatcacagCTC
GTTTATATCAATACATTCCGgagattttaagtttttaaaaaatcctTGAA
TTTAAGCATATGTCAAAGACATGATAAAATTACAAAGGAACTTTAAACTA
GTATTTTATAATGGTATAAAAACGTGTGATCTATTCATATTGAGCGGGAA
AGCGTATCTGGTTTCAGAGCTATATAAGTAGAAATTTTTAACAGCATCTC
AGCACTAAAGTTAAAGGAGGAATCAGAGCGGCAAGAAAATCCGCACattg
aagtttttgaaattaattACTTGAGAGAGTTAGAGATTTAGGGATAGGGT
TATTAGTGTGAGATTCAAGAATCTTTAGAAATATTCAGTCAATAGTTact
cattttgattttttgcgtaCCTTATCGggcaaaacttagtcggccttaat
tttagtcggccttaattattagtcggccctaattttagtcacctcgtcaa
aatttagtcactcaGGGCCAACTAAGGGGTTCTATTTACAGTTAATTTga
accaaatttttagtcggccctaattttagtcaccaagtcaaaatttagtc
acttacatacatacatacataactTCATCCCTCTCAGCGAGAGGGTGAAG
CTATTCGGCATTAgattagtcacttagggccgactaagttttggccgata
aggtatatgacAAACGACCTATTTCGTGCGCTAGTCGATCACCTATCGAA
AAGTGCAAAGCTCATCTAAGCGGAATAAAGATGACTTTAGAGggttttta
gtgatttttgcTGACACAGCATTTGGAATGTGAATCACGTCCCCTAAGTC
AATATTTTTCGAACTTTCCAGTGACCCCGGTCtttgtgaaaatgatttct
tagAGTGTTTTAGtcgtgggaaatttttattcccaGTTTGGTCTTAATCA
AGTCAAACTACAAAAAAGAAACAGGCATTCTCACTCCGATGTTAGAATGT
CATTTCAACAAAACTCATTGACGCGcccttttttatcaaattcattGTAT
TGCGTAACCTCTCAAGAGTTGTTTTTGCGAAGATCGGCATTTCTCAAAAG
AAATATCACATAGACcctatttctttttcattcggCAAGACGTTTTTGTC
AATAGCATTTTATTTTTGTCACTTATTTATATTGCGAACAGTACTTAaag
taaacaattttttttatatgtgCCTATTAAAATTTGGGTATAAATTGACC
GTTATAAAACTTTTAACGGCCATTACTagtcttaattttttgagtccGTC
GAGAACACTTGGGAGCGACAATAGAGAGCTTAAAGATAGCaaagtagagt
ctccataactcgaacctggACAGTGAAcacgaatttgttcgagttatgga
gtaaggtttataaggtatAGCTGACGGGACTAGAAAAATTGTTCGAAGTA
AGGAGACGTTCGAGTTATAtaagttcgagttaaagagactgttTATTGAT
TTTCCAATTGAGTCATGAAGATGATGAGTGAGCCTGTGTAGCATTAAAAG
CTGATACAAACGGGCTTGTGGAGAATCCATCATCAATTTTCACCACCACT
TTGTGAAAGGAGGTTTACTTTGTCTTTGAAGGAGGGTTGTATTttcctaa
atattttcattttcctagatGGAAATCTATAAATAttcattcttcttttt
tcagaaataaaGATTATACGAAGCAAAAATTGTATCAAAActgcaaaaca
aaaaacaagcaaagaaatcaaaatgatgaaatcaaCAATACTATCAGTCA
TCTTTGTAATCGCTATGGCAACCATTCAAACAACAGAGGGCCGTCCCCAA
CAAGCTTCGTCCTCGGGCTATTATGACCTATGTCCACTTTATATTGGCGA
CGAATGTGCTAACTGCTGCGAGTCTGGATATCAAGATTGCATTCTGAACC
TACCTTATGACAACCCAGGAGACTTTGCAAAATGCACTCCTGACCGCACT
GCTTGTCACAATAAAATATGTGCATCATCATAACCTGATTGTAAAGTAAT
GATCCATTTAAGCACGTTCAACGAACACCTGTTATCAGGCGATGATACGT
GTGTTATCTTTTGTATAACACAAAAAGGTCAACAAATAAACTCTGCTTAT
GAATTTATTCTTTCGATGATTCATTTTATCAACACCCTcgtcaaatcaaa
atttataagGCCCTGAGAAATTCGAACTAAGAAAACTCGTACTCAGTCTT
TTAGTTTGTGTTCAATCTATTCGCcatagttttattaaaaaatcaaaatt
tatttcatagtAAAAGCTCTTCGGCTACGCCATCGTCAGTActcttttag
tttatttttgtgattttgaaagATTCACATGTGACTAAATTACAGTTTTA
TTTTATCGAGTTCAACCTTTGTTTTAAACGTCATGGGTTCGAGGGTGCAT
CTTTTGTATGTAGttttatttcttctttctttatttcACTGCTGAAATTC
AAAATCTCTGAAATCTAGGATACGTTTGAGCGCAGATAGAGGAGGAAAAC
GGGTTAGCCGGTATACCCTGTTTTCTAAGATTTAACTCTTTAACTAAGGT
AAAAATCAAAGCTAGATTTCTTTtaaaccaaaatttattttcaaagcttA
ATTTCAAAAACTGTTCCTTTGCACTTTATATTTTCTCTCCATACCGCTTA
TGATTCCAAcaataaaattattatttttaatttatcgTGTCATGTAAATT
TACCCTTAGgttgtatatatttttgttcCCTCTATACACtatgaaaaata
ttgtaaatacACTTAATTTGCTTAAAATGCAAAGATTTCTTG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00016405TCONS_00016405Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000237supercontigsc0000237:155589..164930 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.26	0.38	0.66	1.14	3.3	2.98	13.89	15.52	11.28	9.23	4.33	9.49	51.3	37.72	0.29	0.12	9.05	11.14	209.9	262.48	39.12	40.18	14.71	23.47	34.98	33.69	0.04	0.09	3.43	1.82