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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016322 ID=TCONS_00016322|Name=TCONS_00016322|organism=Clytia hemisphaerica|type=transcript|length=1832bp
ATAATACACGGGATAAGTCTAGCTTGCTTTCCGATCAGCCTGTAAAAAAG
TGCCGTGGCATGAATGAAGGCTAGagaaaattcgtccgtcgtcgtgattt
atctattgatacttaacctcactaatattCTCTTTTCaggagaaatcatt
ttcaaggACGTCAAATTCAAATATCCGTCGAGACCAAAAGATCAAGTGTT
GAAAGGATTGAATCTGACCATCAAACCCAATCAAACCACAGCCATCGTTG
GTCATTCAGGTGCCGGTAAATCAACCATGGCTAAATTGATCACTCGAATT
TATGATCCAACTTCTGGCTCTATTACTGTTGATGGAAAAGATTTAAGATC
TCTCGATTTGGAATATTATCGATCGAAATTAGCAGTAGTCGATCAGTTTC
CATCGCTATTCAATCGAcaattattcgataatatcgCTTACGGAAAAGTC
GATTCTGACCAATGCACCTTGGAAGAAGTAGAAGCAGCCGGAAAACTCGC
CAACTGTGATTTCATTTCCAAGTTTCGTGAAGGCTATCAAACGTTTGCTG
GATATTGTGGTCATGAGCTTTCAGGCGGTCAATTACAACGCGTGGCAATC
GCGCGGGCGGCAATTCGTGATCCAAAGATTTTAGTTCTAGACGAAGCGAC
TTCATCACTAGATGCTGAGAACGAGAAAGAGGTTCAAGTAGCTTTGGAGA
AATTGATGAAAGGACGAACCGTCATTGTGATCGCGCACCGGTTGAGTACC
ATTCGAAATGCTGATAATATCGTGTGCATGAAAGACGGGAACGTTGTCGA
ACAAGGTACTCACGATGAACTGATCGAGAAAAAAGGAGCTTATTATAATC
TCATCTCGCAACAAATCATGCAAGAAAAGAAAGAGTGCCAGAAATGTGGA
GAGTGGATTGACGATGGTAATGATTATCCAGAGGAACACCCTGAAGAGGA
AAACCCTGAGAATGAATCAGGGGAGAACCCTGTGGTTGAAAATGAGGGTT
TAGAGAAAGATGATGATCAGAATCGGAAGAGTGACTCAGCAGAGAACATT
GTAAATATTGATCTTCCTAAACTGAAAGATGGTagaaaaagtaaattaaa
taTGATGCAGAAATTGAGAAGAAGAATAACTCGTTCaaaatctatgaaaa
aatcACGACAAGCAAATGCTGAGGATGTACAGTaggatatttttctttta
ttcgaaCCCAATTCTAAAGAACAGCTGATAGGTTAAATTGcgttgttcta
ataaaaaacgtgtCACTTATAACCAGAGTTTTAATAGACTATAAAAACTA
ACAGAAAATATGaaatgacgatttttgaaacaTTATTAATATTCGATAAT
TTATGCAACGTTATAAGTAGATAATGATATGATCTAATTAAGTTATATTC
AACTTATAATATATAGTATATAAGAAGGGTTCTGTATATTTCATCAACgt
gagaagttttttttctgaattctTTTCTTCGGCAGTGTAACTAATTTCCC
AAAACTCTTCGTCTATTTTTGTCTATCTGGACCAATGGGTTATAGATACC
AATACCCTGAAAAACGACTTCATCTTTATTTCTTTAGCTTAAATTATAAC
AAATCTGTGTAATTTGCAGTTATTTAAGATATATGAGAAAATAGTGAAAT
TTAAGATTCATTTTTTCTCTTGAGATAATTATTTGTGAATGTCATATAAA
ATAGTTTTTGTCCTTTGTATTGCACCTTAGCAAATATTGTGTTGTTCTTA
TCCAAGTAGATattcttgaaaatatttatgAATATTTCCAATTCTCCTCA
AGAAGATTGCCAAGCAAGATCTTCCCTAGAAT Run BLAST on NCBI protein sequence of TCONS_00016322-protein >TCONS_00016322-protein ID=TCONS_00016322-protein|Name=TCONS_00016322-protein|organism=Clytia hemisphaerica|type=polypeptide|length=373bp
MKARENSSVVVIYLLILNLTNILFSGEIIFKDVKFKYPSRPKDQVLKGLN
LTIKPNQTTAIVGHSGAGKSTMAKLITRIYDPTSGSITVDGKDLRSLDLE
YYRSKLAVVDQFPSLFNRQLFDNIAYGKVDSDQCTLEEVEAAGKLANCDF
ISKFREGYQTFAGYCGHELSGGQLQRVAIARAAIRDPKILVLDEATSSLD
AENEKEVQVALEKLMKGRTVIVIAHRLSTIRNADNIVCMKDGNVVEQGTH
DELIEKKGAYYNLISQQIMQEKKECQKCGEWIDDGNDYPEEHPEEENPEN
ESGENPVVENEGLEKDDDQNRKSDSAENIVNIDLPKLKDGRKSKLNMMQK
LRRRITRSKSMKKSRQANAEDVQ Run BLAST on NCBI transcript from alignment at sc0000232:53204..55035 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016322 ID=TCONS_00016322|Name=TCONS_00016322|organism=Clytia hemisphaerica|type=transcript|length=1832bp|location=Sequence derived from alignment at sc0000232:53204..55035 (Clytia hemisphaerica)
ATTCTAGGGAAGATCTTGCTTGGCAATCTTCTTGAGGAGAATTGGAAATA
TTcataaatattttcaagaatATCTACTTGGATAAGAACAACACAATATT
TGCTAAGGTGCAATACAAAGGACAAAAACTATTTTATATGACATTCACAA
ATAATTATCTCAAGAGAAAAAATGAATCTTAAATTTCACTATTTTCTCAT
ATATCTTAAATAACTGCAAATTACACAGATTTGTTATAATTTAAGCTAAA
GAAATAAAGATGAAGTCGTTTTTCAGGGTATTGGTATCTATAACCCATTG
GTCCAGATAGACAAAAATAGACGAAGAGTTTTGGGAAATTAGTTACACTG
CCGAAGAAAagaattcagaaaaaaaacttctcacGTTGATGAAATATACA
GAACCCTTCTTATATACTATATATTATAAGTTGAATATAACTTAATTAGA
TCATATCATTATCTACTTATAACGTTGCATAAATTATCGAATATTAATAA
tgtttcaaaaatcgtcatttCATATTTTCTGTTAGTTTTTATAGTCTATT
AAAACTCTGGTTATAAGTGacacgttttttattagaacaacgCAATTTAA
CCTATCAGCTGTTCTTTAGAATTGGGttcgaataaaagaaaaatatcctA
CTGTACATCCTCAGCATTTGCTTGTCGTgattttttcatagattttGAAC
GAGTTATTCTTCTTCTCAATTTCTGCATCAtatttaatttactttttctA
CCATCTTTCAGTTTAGGAAGATCAATATTTACAATGTTCTCTGCTGAGTC
ACTCTTCCGATTCTGATCATCATCTTTCTCTAAACCCTCATTTTCAACCA
CAGGGTTCTCCCCTGATTCATTCTCAGGGTTTTCCTCTTCAGGGTGTTCC
TCTGGATAATCATTACCATCGTCAATCCACTCTCCACATTTCTGGCACTC
TTTCTTTTCTTGCATGATTTGTTGCGAGATGAGATTATAATAAGCTCCTT
TTTTCTCGATCAGTTCATCGTGAGTACCTTGTTCGACAACGTTCCCGTCT
TTCATGCACACGATATTATCAGCATTTCGAATGGTACTCAACCGGTGCGC
GATCACAATGACGGTTCGTCCTTTCATCAATTTCTCCAAAGCTACTTGAA
CCTCTTTCTCGTTCTCAGCATCTAGTGATGAAGTCGCTTCGTCTAGAACT
AAAATCTTTGGATCACGAATTGCCGCCCGCGCGATTGCCACGCGTTGTAA
TTGACCGCCTGAAAGCTCATGACCACAATATCCAGCAAACGTTTGATAGC
CTTCACGAAACTTGGAAATGAAATCACAGTTGGCGAGTTTTCCGGCTGCT
TCTACTTCTTCCAAGGTGCATTGGTCAGAATCGACTTTTCCGTAAGcgat
attatcgaataattgTCGATTGAATAGCGATGGAAACTGATCGACTACTG
CTAATTTCGATCGATAATATTCCAAATCGAGAGATCTTAAATCTTTTCCA
TCAACAGTAATAGAGCCAGAAGTTGGATCATAAATTCGAGTGATCAATTT
AGCCATGGTTGATTTACCGGCACCTGAATGACCAACGATGGCTGTGGTTT
GATTGGGTTTGATGGTCAGATTCAATCCTTTCAACACTTGATCTTTTGGT
CTCGACGGATATTTGAATTTGACGTccttgaaaatgatttctcctGAAAA
GAGaatattagtgaggttaagtatcaatagataaatcacgacgacggacg
aattttctCTAGCCTTCATTCATGCCACGGCACTTTTTTACAGGCTGATC
GGAAAGCAAGCTAGACTTATCCCGTGTATTAT Coding sequence (CDS) from alignment at sc0000232:53204..55035 >TCONS_00016322 ID=TCONS_00016322|Name=TCONS_00016322|organism=Clytia hemisphaerica|type=CDS|length=1122bp|location=Sequence derived from alignment at sc0000232:53204..55035 (Clytia hemisphaerica)
ctACTGTACATCCTCAGCATTTGCTTGTCGTgattttttcatagattttG
AACGAGTTATTCTTCTTCTCAATTTCTGCATCAtatttaatttacttttt
ctACCATCTTTCAGTTTAGGAAGATCAATATTTACAATGTTCTCTGCTGA
GTCACTCTTCCGATTCTGATCATCATCTTTCTCTAAACCCTCATTTTCAA
CCACAGGGTTCTCCCCTGATTCATTCTCAGGGTTTTCCTCTTCAGGGTGT
TCCTCTGGATAATCATTACCATCGTCAATCCACTCTCCACATTTCTGGCA
CTCTTTCTTTTCTTGCATGATTTGTTGCGAGATGAGATTATAATAAGCTC
CTTTTTTCTCGATCAGTTCATCGTGAGTACCTTGTTCGACAACGTTCCCG
TCTTTCATGCACACGATATTATCAGCATTTCGAATGGTACTCAACCGGTG
CGCGATCACAATGACGGTTCGTCCTTTCATCAATTTCTCCAAAGCTACTT
GAACCTCTTTCTCGTTCTCAGCATCTAGTGATGAAGTCGCTTCGTCTAGA
ACTAAAATCTTTGGATCACGAATTGCCGCCCGCGCGATTGCCACGCGTTG
TAATTGACCGCCTGAAAGCTCATGACCACAATATCCAGCAAACGTTTGAT
AGCCTTCACGAAACTTGGAAATGAAATCACAGTTGGCGAGTTTTCCGGCT
GCTTCTACTTCTTCCAAGGTGCATTGGTCAGAATCGACTTTTCCGTAAGc
gatattatcgaataattgTCGATTGAATAGCGATGGAAACTGATCGACTA
CTGCTAATTTCGATCGATAATATTCCAAATCGAGAGATCTTAAATCTTTT
CCATCAACAGTAATAGAGCCAGAAGTTGGATCATAAATTCGAGTGATCAA
TTTAGCCATGGTTGATTTACCGGCACCTGAATGACCAACGATGGCTGTGG
TTTGATTGGGTTTGATGGTCAGATTCAATCCTTTCAACACTTGATCTTTT
GGTCTCGACGGATATTTGAATTTGACGTccttgaaaatgatttctcctGA
AAAGAGaatattagtgaggttaagtatcaatagataaatcacgacgacgg
acgaattttctCTAGCCTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016322-exon-sc0000232-1491911889:53204..55035 | TCONS_00016322-exon-sc0000232-1491911889:53204..55035 | Clytia hemisphaerica | exon |
| TCONS_00016322-exon-sc0000232-1510915933:53204..55035 | TCONS_00016322-exon-sc0000232-1510915933:53204..55035 | Clytia hemisphaerica | exon |
| TCONS_00016322-exon-sc0000232-1575043694:53204..55035 | TCONS_00016322-exon-sc0000232-1575043694:53204..55035 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000232 | supercontig | sc0000232:53204..55035 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016887 | ATPase activity |
| GO:0005524 | ATP binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0016887 |
ATPase activity |
| molecular_function |
GO:0005524 |
ATP binding |
Blast
BLAST of TCONS_00016322 vs. Swiss-Prot (Human)
Match: MDR1 (Multidrug resistance protein 1 OS=Homo sapiens GN=ABCB1 PE=1 SV=3) HSP 1 Score: 258.455 bits (659), Expect = 1.037e-73 Identity = 128/256 (50.00%), Postives = 179/256 (69.92%), Query Frame = 1
Query: 139 GEIIFKDVKFKYPSRPKDQVLKGLNLTIKPNQTTAIVGHSGAGKSTMAKLITRIYDPTSGSITVDGKDLRSLDLEYYRSKLAVVDQFPSLFNRQLFDNIAYGKVDSDQCTLEEVEAAGKLANC-DFISKFREGYQTFAGYCGHELSGGQLQRVAIARAAIRDPKILVLDEATSSLDAENEKEVQVALEKLMKGRTVIVIAHRLSTIRNADNIVCMKDGNVVEQGTHDELIEKKGAYYNLISQQIMQEKKECQKCGE 903
G + F++V F YPSR + ++LKGLNL ++ QT A+VG+SG GKST +L+ R+YDPT G ++VDG+D+R++++ + R + VV Q P LF + +NI YG+ + T++E+E A K AN DFI K + T G G +LSGGQ QR+AIARA +R+PKIL+LDEATS+LD E+E VQVAL+K KGRT IVIAHRLST+RNAD I DG +VE+G HDEL+++KG Y+ L++ Q + E + +
Sbjct: 390 GNLEFRNVHFSYPSRKEVKILKGLNLKVQSGQTVALVGNSGCGKSTTVQLMQRLYDPTEGMVSVDGQDIRTINVRFLREIIGVVSQEPVLFATTIAENIRYGR---ENVTMDEIEKAVKEANAYDFIMKLPHKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQVALDKARKGRTTIVIAHRLSTVRNADVIAGFDDGVIVEKGNHDELMKEKGIYFKLVTMQTAGNEVELENAAD 642 HSP 2 Score: 237.654 bits (605), Expect = 1.689e-66 Identity = 122/243 (50.21%), Postives = 168/243 (69.14%), Query Frame = 1
Query: 139 GEIIFKDVKFKYPSRPKDQVLKGLNLTIKPNQTTAIVGHSGAGKSTMAKLITRIYDPTSGSITVDGKDLRSLDLEYYRSKLAVVDQFPSLFNRQLFDNIAYGKVDSDQCTLEEVEAAGKLANCD-FISKFREGYQTFAGYCGHELSGGQLQRVAIARAAIRDPKILVLDEATSSLDAENEKEVQVALEKLMKGRTVIVIAHRLSTIRNADNIVCMKDGNVVEQGTHDELIEKKGAYYNLISQQ 864
G + F +V F YP+RP VL+GL+L +K QT A+VG SG GKST+ +L+ R YDP +G + +DGK+++ L++++ R+ L +V Q P LF+ + +NIAYG +S + EE+ A K AN FI Y T G G +LSGGQ QR+AIARA +R P IL+LDEATS+LD E+EK VQ AL+K +GRT IVIAHRLSTI+NAD IV ++G V E GTH +L+ +KG Y++++S Q
Sbjct: 1033 GNVTFGEVVFNYPTRPDIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPLAGKVLLDGKEIKRLNVQWLRAHLGIVSQEPILFDCSIAENIAYGD-NSRVVSQEEIVRAAKEANIHAFIESLPNKYSTKVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVFQNGRVKEHGTHQQLLAQKGIYFSMVSVQ 1274
The following BLAST results are available for this feature:
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