TCONS_00016322 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016322
Unique NameTCONS_00016322
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1832

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016322 ID=TCONS_00016322|Name=TCONS_00016322|organism=Clytia hemisphaerica|type=transcript|length=1832bp
ATAATACACGGGATAAGTCTAGCTTGCTTTCCGATCAGCCTGTAAAAAAG
TGCCGTGGCATGAATGAAGGCTAGagaaaattcgtccgtcgtcgtgattt
atctattgatacttaacctcactaatattCTCTTTTCaggagaaatcatt
ttcaaggACGTCAAATTCAAATATCCGTCGAGACCAAAAGATCAAGTGTT
GAAAGGATTGAATCTGACCATCAAACCCAATCAAACCACAGCCATCGTTG
GTCATTCAGGTGCCGGTAAATCAACCATGGCTAAATTGATCACTCGAATT
TATGATCCAACTTCTGGCTCTATTACTGTTGATGGAAAAGATTTAAGATC
TCTCGATTTGGAATATTATCGATCGAAATTAGCAGTAGTCGATCAGTTTC
CATCGCTATTCAATCGAcaattattcgataatatcgCTTACGGAAAAGTC
GATTCTGACCAATGCACCTTGGAAGAAGTAGAAGCAGCCGGAAAACTCGC
CAACTGTGATTTCATTTCCAAGTTTCGTGAAGGCTATCAAACGTTTGCTG
GATATTGTGGTCATGAGCTTTCAGGCGGTCAATTACAACGCGTGGCAATC
GCGCGGGCGGCAATTCGTGATCCAAAGATTTTAGTTCTAGACGAAGCGAC
TTCATCACTAGATGCTGAGAACGAGAAAGAGGTTCAAGTAGCTTTGGAGA
AATTGATGAAAGGACGAACCGTCATTGTGATCGCGCACCGGTTGAGTACC
ATTCGAAATGCTGATAATATCGTGTGCATGAAAGACGGGAACGTTGTCGA
ACAAGGTACTCACGATGAACTGATCGAGAAAAAAGGAGCTTATTATAATC
TCATCTCGCAACAAATCATGCAAGAAAAGAAAGAGTGCCAGAAATGTGGA
GAGTGGATTGACGATGGTAATGATTATCCAGAGGAACACCCTGAAGAGGA
AAACCCTGAGAATGAATCAGGGGAGAACCCTGTGGTTGAAAATGAGGGTT
TAGAGAAAGATGATGATCAGAATCGGAAGAGTGACTCAGCAGAGAACATT
GTAAATATTGATCTTCCTAAACTGAAAGATGGTagaaaaagtaaattaaa
taTGATGCAGAAATTGAGAAGAAGAATAACTCGTTCaaaatctatgaaaa
aatcACGACAAGCAAATGCTGAGGATGTACAGTaggatatttttctttta
ttcgaaCCCAATTCTAAAGAACAGCTGATAGGTTAAATTGcgttgttcta
ataaaaaacgtgtCACTTATAACCAGAGTTTTAATAGACTATAAAAACTA
ACAGAAAATATGaaatgacgatttttgaaacaTTATTAATATTCGATAAT
TTATGCAACGTTATAAGTAGATAATGATATGATCTAATTAAGTTATATTC
AACTTATAATATATAGTATATAAGAAGGGTTCTGTATATTTCATCAACgt
gagaagttttttttctgaattctTTTCTTCGGCAGTGTAACTAATTTCCC
AAAACTCTTCGTCTATTTTTGTCTATCTGGACCAATGGGTTATAGATACC
AATACCCTGAAAAACGACTTCATCTTTATTTCTTTAGCTTAAATTATAAC
AAATCTGTGTAATTTGCAGTTATTTAAGATATATGAGAAAATAGTGAAAT
TTAAGATTCATTTTTTCTCTTGAGATAATTATTTGTGAATGTCATATAAA
ATAGTTTTTGTCCTTTGTATTGCACCTTAGCAAATATTGTGTTGTTCTTA
TCCAAGTAGATattcttgaaaatatttatgAATATTTCCAATTCTCCTCA
AGAAGATTGCCAAGCAAGATCTTCCCTAGAAT
Run BLAST on NCBI

protein sequence of TCONS_00016322-protein

>TCONS_00016322-protein ID=TCONS_00016322-protein|Name=TCONS_00016322-protein|organism=Clytia hemisphaerica|type=polypeptide|length=373bp
MKARENSSVVVIYLLILNLTNILFSGEIIFKDVKFKYPSRPKDQVLKGLN
LTIKPNQTTAIVGHSGAGKSTMAKLITRIYDPTSGSITVDGKDLRSLDLE
YYRSKLAVVDQFPSLFNRQLFDNIAYGKVDSDQCTLEEVEAAGKLANCDF
ISKFREGYQTFAGYCGHELSGGQLQRVAIARAAIRDPKILVLDEATSSLD
AENEKEVQVALEKLMKGRTVIVIAHRLSTIRNADNIVCMKDGNVVEQGTH
DELIEKKGAYYNLISQQIMQEKKECQKCGEWIDDGNDYPEEHPEEENPEN
ESGENPVVENEGLEKDDDQNRKSDSAENIVNIDLPKLKDGRKSKLNMMQK
LRRRITRSKSMKKSRQANAEDVQ
Run BLAST on NCBI

transcript from alignment at sc0000232:53204..55035

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016322 ID=TCONS_00016322|Name=TCONS_00016322|organism=Clytia hemisphaerica|type=transcript|length=1832bp|location=Sequence derived from alignment at sc0000232:53204..55035 (Clytia hemisphaerica)
ATTCTAGGGAAGATCTTGCTTGGCAATCTTCTTGAGGAGAATTGGAAATA
TTcataaatattttcaagaatATCTACTTGGATAAGAACAACACAATATT
TGCTAAGGTGCAATACAAAGGACAAAAACTATTTTATATGACATTCACAA
ATAATTATCTCAAGAGAAAAAATGAATCTTAAATTTCACTATTTTCTCAT
ATATCTTAAATAACTGCAAATTACACAGATTTGTTATAATTTAAGCTAAA
GAAATAAAGATGAAGTCGTTTTTCAGGGTATTGGTATCTATAACCCATTG
GTCCAGATAGACAAAAATAGACGAAGAGTTTTGGGAAATTAGTTACACTG
CCGAAGAAAagaattcagaaaaaaaacttctcacGTTGATGAAATATACA
GAACCCTTCTTATATACTATATATTATAAGTTGAATATAACTTAATTAGA
TCATATCATTATCTACTTATAACGTTGCATAAATTATCGAATATTAATAA
tgtttcaaaaatcgtcatttCATATTTTCTGTTAGTTTTTATAGTCTATT
AAAACTCTGGTTATAAGTGacacgttttttattagaacaacgCAATTTAA
CCTATCAGCTGTTCTTTAGAATTGGGttcgaataaaagaaaaatatcctA
CTGTACATCCTCAGCATTTGCTTGTCGTgattttttcatagattttGAAC
GAGTTATTCTTCTTCTCAATTTCTGCATCAtatttaatttactttttctA
CCATCTTTCAGTTTAGGAAGATCAATATTTACAATGTTCTCTGCTGAGTC
ACTCTTCCGATTCTGATCATCATCTTTCTCTAAACCCTCATTTTCAACCA
CAGGGTTCTCCCCTGATTCATTCTCAGGGTTTTCCTCTTCAGGGTGTTCC
TCTGGATAATCATTACCATCGTCAATCCACTCTCCACATTTCTGGCACTC
TTTCTTTTCTTGCATGATTTGTTGCGAGATGAGATTATAATAAGCTCCTT
TTTTCTCGATCAGTTCATCGTGAGTACCTTGTTCGACAACGTTCCCGTCT
TTCATGCACACGATATTATCAGCATTTCGAATGGTACTCAACCGGTGCGC
GATCACAATGACGGTTCGTCCTTTCATCAATTTCTCCAAAGCTACTTGAA
CCTCTTTCTCGTTCTCAGCATCTAGTGATGAAGTCGCTTCGTCTAGAACT
AAAATCTTTGGATCACGAATTGCCGCCCGCGCGATTGCCACGCGTTGTAA
TTGACCGCCTGAAAGCTCATGACCACAATATCCAGCAAACGTTTGATAGC
CTTCACGAAACTTGGAAATGAAATCACAGTTGGCGAGTTTTCCGGCTGCT
TCTACTTCTTCCAAGGTGCATTGGTCAGAATCGACTTTTCCGTAAGcgat
attatcgaataattgTCGATTGAATAGCGATGGAAACTGATCGACTACTG
CTAATTTCGATCGATAATATTCCAAATCGAGAGATCTTAAATCTTTTCCA
TCAACAGTAATAGAGCCAGAAGTTGGATCATAAATTCGAGTGATCAATTT
AGCCATGGTTGATTTACCGGCACCTGAATGACCAACGATGGCTGTGGTTT
GATTGGGTTTGATGGTCAGATTCAATCCTTTCAACACTTGATCTTTTGGT
CTCGACGGATATTTGAATTTGACGTccttgaaaatgatttctcctGAAAA
GAGaatattagtgaggttaagtatcaatagataaatcacgacgacggacg
aattttctCTAGCCTTCATTCATGCCACGGCACTTTTTTACAGGCTGATC
GGAAAGCAAGCTAGACTTATCCCGTGTATTAT

Coding sequence (CDS) from alignment at sc0000232:53204..55035

>TCONS_00016322 ID=TCONS_00016322|Name=TCONS_00016322|organism=Clytia hemisphaerica|type=CDS|length=1122bp|location=Sequence derived from alignment at sc0000232:53204..55035 (Clytia hemisphaerica)
ctACTGTACATCCTCAGCATTTGCTTGTCGTgattttttcatagattttG
AACGAGTTATTCTTCTTCTCAATTTCTGCATCAtatttaatttacttttt
ctACCATCTTTCAGTTTAGGAAGATCAATATTTACAATGTTCTCTGCTGA
GTCACTCTTCCGATTCTGATCATCATCTTTCTCTAAACCCTCATTTTCAA
CCACAGGGTTCTCCCCTGATTCATTCTCAGGGTTTTCCTCTTCAGGGTGT
TCCTCTGGATAATCATTACCATCGTCAATCCACTCTCCACATTTCTGGCA
CTCTTTCTTTTCTTGCATGATTTGTTGCGAGATGAGATTATAATAAGCTC
CTTTTTTCTCGATCAGTTCATCGTGAGTACCTTGTTCGACAACGTTCCCG
TCTTTCATGCACACGATATTATCAGCATTTCGAATGGTACTCAACCGGTG
CGCGATCACAATGACGGTTCGTCCTTTCATCAATTTCTCCAAAGCTACTT
GAACCTCTTTCTCGTTCTCAGCATCTAGTGATGAAGTCGCTTCGTCTAGA
ACTAAAATCTTTGGATCACGAATTGCCGCCCGCGCGATTGCCACGCGTTG
TAATTGACCGCCTGAAAGCTCATGACCACAATATCCAGCAAACGTTTGAT
AGCCTTCACGAAACTTGGAAATGAAATCACAGTTGGCGAGTTTTCCGGCT
GCTTCTACTTCTTCCAAGGTGCATTGGTCAGAATCGACTTTTCCGTAAGc
gatattatcgaataattgTCGATTGAATAGCGATGGAAACTGATCGACTA
CTGCTAATTTCGATCGATAATATTCCAAATCGAGAGATCTTAAATCTTTT
CCATCAACAGTAATAGAGCCAGAAGTTGGATCATAAATTCGAGTGATCAA
TTTAGCCATGGTTGATTTACCGGCACCTGAATGACCAACGATGGCTGTGG
TTTGATTGGGTTTGATGGTCAGATTCAATCCTTTCAACACTTGATCTTTT
GGTCTCGACGGATATTTGAATTTGACGTccttgaaaatgatttctcctGA
AAAGAGaatattagtgaggttaagtatcaatagataaatcacgacgacgg
acgaattttctCTAGCCTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009104XLOC_009104Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016322-proteinTCONS_00016322-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016322-exon-sc0000232-1491911889:53204..55035TCONS_00016322-exon-sc0000232-1491911889:53204..55035Clytia hemisphaericaexon
TCONS_00016322-exon-sc0000232-1510915933:53204..55035TCONS_00016322-exon-sc0000232-1510915933:53204..55035Clytia hemisphaericaexon
TCONS_00016322-exon-sc0000232-1575043694:53204..55035TCONS_00016322-exon-sc0000232-1575043694:53204..55035Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000232supercontigsc0000232:53204..55035 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.175254	0.192244	0.173984	0.147535	0.766443	0.442593	0.421555	0.762999	1.64437	7.50239	4.01458	1.68875	33.8643	29.5247	26.2737	13.5246	3.6874	13.4859	24.3624	32.9417	1.43005	1.36153	2.8217	2.33464	9.07101	8.46215	124.679	132.397	20.2771	14.715
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003593AAA+_ATPase
IPR003439ABC_transporter-like
IPR017871ABC_transporter_CS
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0016887ATPase activity
GO:0005524ATP binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016887 ATPase activity
molecular_function GO:0005524 ATP binding
Blast
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BLAST of TCONS_00016322 vs. Swiss-Prot (Human)
Match: MDR1 (Multidrug resistance protein 1 OS=Homo sapiens GN=ABCB1 PE=1 SV=3)

HSP 1 Score: 258.455 bits (659), Expect = 1.037e-73
Identity = 128/256 (50.00%), Postives = 179/256 (69.92%), Query Frame = 1 
Query:  139 GEIIFKDVKFKYPSRPKDQVLKGLNLTIKPNQTTAIVGHSGAGKSTMAKLITRIYDPTSGSITVDGKDLRSLDLEYYRSKLAVVDQFPSLFNRQLFDNIAYGKVDSDQCTLEEVEAAGKLANC-DFISKFREGYQTFAGYCGHELSGGQLQRVAIARAAIRDPKILVLDEATSSLDAENEKEVQVALEKLMKGRTVIVIAHRLSTIRNADNIVCMKDGNVVEQGTHDELIEKKGAYYNLISQQIMQEKKECQKCGE 903
            G + F++V F YPSR + ++LKGLNL ++  QT A+VG+SG GKST  +L+ R+YDPT G ++VDG+D+R++++ + R  + VV Q P LF   + +NI YG+   +  T++E+E A K AN  DFI K    + T  G  G +LSGGQ QR+AIARA +R+PKIL+LDEATS+LD E+E  VQVAL+K  KGRT IVIAHRLST+RNAD I    DG +VE+G HDEL+++KG Y+ L++ Q    + E +   +
Sbjct:  390 GNLEFRNVHFSYPSRKEVKILKGLNLKVQSGQTVALVGNSGCGKSTTVQLMQRLYDPTEGMVSVDGQDIRTINVRFLREIIGVVSQEPVLFATTIAENIRYGR---ENVTMDEIEKAVKEANAYDFIMKLPHKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQVALDKARKGRTTIVIAHRLSTVRNADVIAGFDDGVIVEKGNHDELMKEKGIYFKLVTMQTAGNEVELENAAD 642

HSP 2 Score: 237.654 bits (605), Expect = 1.689e-66
Identity = 122/243 (50.21%), Postives = 168/243 (69.14%), Query Frame = 1 
Query:  139 GEIIFKDVKFKYPSRPKDQVLKGLNLTIKPNQTTAIVGHSGAGKSTMAKLITRIYDPTSGSITVDGKDLRSLDLEYYRSKLAVVDQFPSLFNRQLFDNIAYGKVDSDQCTLEEVEAAGKLANCD-FISKFREGYQTFAGYCGHELSGGQLQRVAIARAAIRDPKILVLDEATSSLDAENEKEVQVALEKLMKGRTVIVIAHRLSTIRNADNIVCMKDGNVVEQGTHDELIEKKGAYYNLISQQ 864
            G + F +V F YP+RP   VL+GL+L +K  QT A+VG SG GKST+ +L+ R YDP +G + +DGK+++ L++++ R+ L +V Q P LF+  + +NIAYG  +S   + EE+  A K AN   FI      Y T  G  G +LSGGQ QR+AIARA +R P IL+LDEATS+LD E+EK VQ AL+K  +GRT IVIAHRLSTI+NAD IV  ++G V E GTH +L+ +KG Y++++S Q
Sbjct: 1033 GNVTFGEVVFNYPTRPDIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPLAGKVLLDGKEIKRLNVQWLRAHLGIVSQEPILFDCSIAENIAYGD-NSRVVSQEEIVRAAKEANIHAFIESLPNKYSTKVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVFQNGRVKEHGTHQQLLAQKGIYFSMVSVQ 1274
The following BLAST results are available for this feature:
BLAST of TCONS_00016322 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MDR11.037e-7350.00Multidrug resistance protein 1 OS=Homo sapiens GN=... [more]
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