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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016227 ID=TCONS_00016227|Name=TCONS_00016227|organism=Clytia hemisphaerica|type=transcript|length=6191bpRun BLAST on NCBI protein sequence of TCONS_00016227-protein >TCONS_00016227-protein ID=TCONS_00016227-protein|Name=TCONS_00016227-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1641bp MFLTTILLCLALTTFMAAVNADQGKDNNDLADQVCKAQCIHLKQNCGQLLRun BLAST on NCBI transcript from alignment at sc0000231:330629..369512- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016227 ID=TCONS_00016227|Name=TCONS_00016227|organism=Clytia hemisphaerica|type=transcript|length=38884bp|location=Sequence derived from alignment at sc0000231:330629..369512- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000231:330629..369512- >TCONS_00016227 ID=TCONS_00016227|Name=TCONS_00016227|organism=Clytia hemisphaerica|type=CDS|length=98520bp|location=Sequence derived from alignment at sc0000231:330629..369512- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00016227 vs. Swiss-Prot (Human)
Match: LRP4 (Low-density lipoprotein receptor-related protein 4 OS=Homo sapiens GN=LRP4 PE=1 SV=4) HSP 1 Score: 254.218 bits (648), Expect = 1.144e-67 Identity = 181/642 (28.19%), Postives = 307/642 (47.82%), Query Frame = 1
Query: 460 SLEIDSHNKK--VFWGDFRYHTINCSDLDGGNRKSVLTYAIGYAQGISADWTSNNVYWTDSLMHLVEVADYEGKHRKVLFALDKESEPRGILANPKSRHLFWTDWGKEPKIERSTLHGTDRVAIVTKNLTWPNDLAIDHTSERLYWVDAKYDYLYSVDYDGKNMKLHYELMFNQGIVHPYSLAYSTKNHAIYLSDWQTDRVYVDTLMDGHNVTSVFQNRGKQKNIGQIRLH---EDYTDAGITKPCATNR-------CSHMCFNAGQTYKCGCPTGWELSSDDEVCVESKRSYEIYFADSFANTVN-HLVKYEGQD-GFSIKPLPNITHEGLQSPLALDFDSTPDSRYVYWADHKKEKVYRMHENGGKFETLI--TGQVTYGLAIDKINKLLYWFKDNKDLVVSSVTGEDIKT--MFAGLHSPRDIALYEEKGLIFFND-HYDGRIYRINADGTGLKSYKSTRKTAITGIAVDKIENRLYWCDSESYSIQSIDISLVSSTRKLVVQKTTYFYGRFWLVTQDSHVVEPFDLSISGDQMFWTDTYKRAIFSADKRSGGRIDYVTGGLDHPRDLHVVKDIAVNESKIIYKISHLMNIGSSSKARCFTSCAATTFFKSSVKEPEKCPVGYKQTNYGVKCAEATDSF 2328
++ +D H+++ VFW D I ++L+G N + V++ + G++ DW + +YWTDS +EVA+ +G HRKVL + E +PR I +P ++WTDWG P+IE S++ G+ R I +L WPN L ID+ R+YWVDAK+ + + DG H + + +QG+ HP+ A + ++Y +DW T ++ S + GK + I + +LH + +T +P NR C+H+C +GQ Y C CPTG+ S C +S + + FA ++ + ++ +D + PL ++ +S +ALD+DS D +VYW D + + R +G E ++ + + GLAID + LYW D + + T ++T ++ L PRDI + G +++ D +I R D +G + S+ T G+A+D RLYW D+ +I+ L S RK+++ S + PF L++ G++++WTD ++I SAD+ +G + + L++ D+HV + + M G S C S + F + CP G + G C+ +SF
Sbjct: 470 AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQNLE-KPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS----HRKAVISQGLPHPF--AITVFEDSLYWTDWHT-----------KSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFRKIS-SHACAQSLDKFLL-----FARRMDIRRISFDTEDLSDDVIPLADV-----RSAVALDWDSRDD--HVYWTDVSTDTISRAKWDGTGQEVVVDTSLESPAGLAIDWVTNKLYWTDAGTDRIEVANTDGSMRTVLIWENLDRPRDIVVEPMGGYMYWTDWGASPKIERAGMDASGRQVIISSNLTWPNGLAIDYGSQRLYWADAGMKTIEF--AGLDGSKRKVLIG---------------SQLPHPFGLTLYGERIYWTDWQTKSIQSADRLTGLDRETLQENLENLMDIHV-----FHRRRPPVSTPCAMENGGCSHL-CLRSPNPSGFSCT-------CPTGINLLSDGKTCSPGMNSF 1050 HSP 2 Score: 248.054 bits (632), Expect = 9.438e-66 Identity = 165/565 (29.20%), Postives = 273/565 (48.32%), Query Frame = 1
Query: 460 SLEIDSHNKKVFWGDFRYHTINCSDLDGGNRKSVLTYAIGYAQGISADWTSNNVYWTDSLMHLVEVADYEGKHRKVLFALDKESEPRGILANPKSRHLFWTDWGKEPKIERSTLHGTDRVAIVTKNLTWPNDLAIDHTSERLYWVDAKYDYLYSVDYDGKNMKLHYELMFNQGIVHPYSLAYSTKNHAIYLSDWQTDRVYVDTLMDGHNVTSVFQNRGKQKNIGQIRLHEDYTDAGITKPCATNR--CSHMCFNAGQT--YKCGCPTGWELSSDDEVCVESKRSYEIYFADSFANTVNHLVKYEGQDGFSIKPLP-NITHEGLQSPLALDFDSTPDSRYVYWADHKKEKVYRMHENGGKFETLITG--QVTYGLAIDKINKLLYWFKDNKDLV-VSSVTGEDIKTM-FAGLHSPRDIALYEEKGLIFFND-HYDGRIYRINADGTGLKSYKSTRKTAITGIAVDKIENRLYWCDSESYSIQSIDISLVSSTRKLVVQKTTYFYGRFWLVTQDSHVVEPFDLSISGDQMFWTDTYKRAIFSADKRSGGRIDYVTGGLDHPRDLHVV 2124
+L+ DS + V+W D TI+ + DG ++ V+ ++ G++ DW +N +YWTD+ +EVA+ +G R VL + PR I+ P +++WTDWG PKIER+ + + R I++ NLTWPN LAID+ S+RLYW DA + DG K ++ + HP+ L + IY +DWQT + + G + ++ +N +N+ I + ++ PCA CSH+C + + C CPTG L SD + C S+ I+ V+ + Y F+ +P NIT +++ +A+ D P VYW+D ++ R + +G + E +IT Q T GLA+D I + +YW + + V ++ G K + + L SPR I LY E G +++ D + ++ R DG+ + G+ VDK ++L W D+ + I++ D++ + R +V S V P+ L++ ++WTD R+I ADK +G + V L D+ V
Sbjct: 777 ALDWDSRDDHVYWTDVSTDTISRAKWDGTGQEVVVDTSLESPAGLAIDWVTNKLYWTDAGTDRIEVANTDGSMRTVLI-WENLDRPRDIVVEPMGGYMYWTDWGASPKIERAGMDASGRQVIISSNLTWPNGLAIDYGSQRLYWADAGMKTIEFAGLDGSKRK----VLIGSQLPHPFGL--TLYGERIYWTDWQTKSIQSADRLTGLDRETLQEN---LENLMDIHVFHRRRPP-VSTPCAMENGGCSHLCLRSPNPSGFSCTCPTGINLLSDGKTCSPGMNSFLIFARRIDIRMVSLDIPY-----FADVVVPINIT---MKNTIAIGVD--PQEGKVYWSDSTLHRISRANLDGSQHEDIITTGLQTTDGLAVDAIGRKVYWTDTGTNRIEVGNLDGSMRKVLVWQNLDSPRAIVLYHEMGFMYWTDWGENAKLERSGMDGSDRAVLINNNLGWPNGLTVDKASSQLLWADAHTERIEAADLN--GANRHTLV----------------SPVQHPYGLTLLDSYIYWTDWQTRSIHRADKGTGSNVILVRSNLPGLMDMQAV 1302 HSP 3 Score: 234.572 bits (597), Expect = 1.391e-61 Identity = 161/562 (28.65%), Postives = 265/562 (47.15%), Query Frame = 1
Query: 460 SLEIDSHNKKVFWGDFRYHTINCSDLDGGNRKSVLTYAIGYAQGISADWTSNNVYWTDSLMHLVEVADYEGKHRKVLFALDKESEPRGILANPKSRHLFWTDWGKEPKIERSTLHGTDRVAIVTKNLTWPNDLAIDHTSERLYWVDAKYDYLYSVDYDGKNMKLHYELMFNQGIVHPYSLAYSTKNHAIYLSDWQTDRVYVDTLMDGHNVTSVFQNRGKQKNIGQIRLHEDYTDAGITKPCATNR-CSHMCFNAGQTYKCGCPTGWELSSDDEVCVESKRSYEIYFADSFANTVNHLVKYEGQDGFSIK-PLPNITHEGLQSPLALDFDSTPDSRYVYWADHKKEKVYRMHENGGKFETLITG--QVTYGLAIDKINKLLYWFKDNKDLV-VSSVTGEDIKTMF-AGLHSPRDIALYEEKGLIFFND-HYDGRIYRINADGTGLKSYKSTRKTAITGIAVDKIENRLYWCDSESYSIQSIDISLVSSTRKLVVQKTTYFYGRFWLVTQDSHVVEPFDLSISGDQMFWTDTYKRAIFSADKRSGGRIDYVTGGLDHPRDLHVV 2124
++ +D KV+W D H I+ ++LDG + ++T + G++ D VYWTD+ + +EV + +G RKVL + +S PR I+ + ++WTDWG+ K+ERS + G+DR ++ NL WPN L +D S +L W DA + + + D +G N + HPY L + + IY +DWQT ++ G NV V R + ++ + G K + N CSH+C + C CPTG +L D + C S +Y ++ + ++ + D + P+P L + ++LD+DS VY+ D + + R NG ET+I + T GLA+D + + LYW ++ + S + G K + L PR IA++ KG +F+ D + +I R N DG+ K +T G+ +D R+YW D+ I+S D++ R+++V SHV PF L+ ++WTD ++I DK SG + V ++ D+ VV
Sbjct: 1085 AIGVDPQEGKVYWSDSTLHRISRANLDGSQHEDIITTGLQTTDGLAVDAIGRKVYWTDTGTNRIEVGNLDGSMRKVLVWQNLDS-PRAIVLYHEMGFMYWTDWGENAKLERSGMDGSDRAVLINNNLGWPNGLTVDKASSQLLWADAHTERIEAADLNGANRH-----TLVSPVQHPYGL--TLLDSYIYWTDWQTRSIHRADKGTGSNVILV---RSNLPGLMDMQAVDRAQPLGFNKCGSRNGGCSHLCLPRPSGFSCACPTGIQLKGDGKTCDPSPETYLLFSSRGSIRRIS----LDTSDHTDVHVPVPE-----LNNVISLDYDSVDGK--VYYTDVFLDVIRRADLNGSNMETVIGRGLKTTDGLAVDWVARNLYWTDTGRNTIEASRLDGSCRKVLINNSLDEPRAIAVFPRKGYLFWTDWGHIAKIERANLDGSERKVLINTDLGWPNGLTLDYDTRRIYWVDAHLDRIESADLN--GKLRQVLV----------------SHVSHPFALTQQDRWIYWTDWQTKSIQRVDKYSGRNKETVLANVEGLMDIIVV 1606 HSP 4 Score: 162.54 bits (410), Expect = 1.271e-39 Identity = 98/310 (31.61%), Postives = 148/310 (47.74%), Query Frame = 1
Query: 397 GKRYSESAQAETLFQSSGHIR-----------------------SLEIDSHNKKVFWGDFRYHTINCSDLDGGNRKSVLTYAIGYAQGISADWTSNNVYWTDSLMHLVEVADYEGKHRKVLF--ALDKESEPRGILANPKSRHLFWTDWGKEPKIERSTLHGTDRVAIVTKNLTWPNDLAIDHTSERLYWVDAKYDYLYSVDYDGKNMKLHYELMFNQGIVHPYSLAYSTKNHAIYLSDWQTDRVYVDTLMDGHNVTSVFQNRGKQKNIGQIRLHEDYTDAGITKPCATNR--CSHMCFNAGQTYKCGCP 1245
GK S + LF S G IR SL+ DS + KV++ D I +DL+G N ++V+ + G++ DW + N+YWTD+ + +E + +G RKVL +LD EPR I P+ +LFWTDWG KIER+ L G++R ++ +L WPN L +D+ + R+YWVDA D + S D +GK + + HP++L + ++ IY +DWQT + G N +V N +I + T C N C+H+CF + C CP
Sbjct: 1345 GKTCDPSPETYLLFSSRGSIRRISLDTSDHTDVHVPVPELNNVISLDYDSVDGKVYYTDVFLDVIRRADLNGSNMETVIGRGLKTTDGLAVDWVARNLYWTDTGRNTIEASRLDGSCRKVLINNSLD---EPRAIAVFPRKGYLFWTDWGHIAKIERANLDGSERKVLINTDLGWPNGLTLDYDTRRIYWVDAHLDRIESADLNGK-----LRQVLVSHVSHPFAL--TQQDRWIYWTDWQTKSIQRVDKYSGRNKETVLANVEGLMDIIVVSPQRQTG----TNACGVNNGGCTHLCFARASDFVCACP 1640 HSP 5 Score: 110.923 bits (276), Expect = 6.046e-24 Identity = 87/339 (25.66%), Postives = 150/339 (44.25%), Query Frame = 1
Query: 1138 RLHEDYTDAGITKPCATNR-CSHMCFNAGQTYKCGCPTGWELSSDDEVCVESKRSYEIYFAD--SFANTVNHLVKYEGQDGFSIKPLPNITHEGLQSPLALDFDSTPDSRYVYWADHKKEKVYRMHENGGKFETLITGQVTY--GLAIDKINKLLYWFKDNKDLV-VSSVTGEDIKTM-FAGLHSPRDIALYEEKGLIFFNDHYDGRIYRINA---DGTGLKSYKSTRKTAITGIAVDKIENRLYWCDSESYSIQSIDISLVSSTRKLVVQKTTYFYGRFWLVTQDSHVVEPFDLSISGDQMFWTDTYKRAIFSADKRSGGRIDYVTGGLDHPRDLHVV 2124
RL ED CA CS C N+ ++C C TG+EL D C + FA+ + H +Y + L++ +ALDF V+W+D +++ R + NG E +++ + GLA+D ++ LYW + V+++ G K + + L PR IAL+ +G I++ D G RI A DG+G + T G+ +D R+YW D++ + I+ ++ S RK V+ + + PF +++ D ++WTD + ++I SA+K +G + + L P D+H +
Sbjct: 385 RLTEDGHTCQDVNECAEEGYCSQGCTNSEGAFQCWCETGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEY------------TLLLNNLENAIALDFHHR--RELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQNLEKPRAIALHPMEGTIYWTDW--GNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD--GSHRKAVISQG---------------LPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTL 690 The following BLAST results are available for this feature:
BLAST of TCONS_00016227 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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