TCONS_00016167 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016167
Unique NameTCONS_00016167
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1430

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016167 ID=TCONS_00016167|Name=TCONS_00016167|organism=Clytia hemisphaerica|type=transcript|length=1430bp
TAATTATTTTCTACCTAAGGCTAGCAAAATATTACTCACAACCACACAAA
AATCTTGGCTGATGCAAAATATTTGACCCATGATAAAAAAGCCAAATCTG
TTACAGTATCCCAAAATCTGTTGTTGGGCCCTGCATGATATTTATAtaga
acatttgaaagaaaaagcttTCTAAATGTACATTTTAAGTAAGTATTAGT
AAAAGTAGTATATAAATGAATGATGATAAACAAAATGATGGTAAATTCAG
GTATTAttaaatcataatttttttcttaggAAACGTAAAATACTTACCAt
taattcaaataaataaaatagatTACTCACTCAACATggttcaaaatctt
gaaaagccTCTTCAAGAAATACCTCAATATTTAGAGGGGTTTAGTTTTCA
TGAATCAACTGGGCAACTCGCAGTAGCCTCATCAAATCTCACTGGTAGGG
ATTGGGATGGTGCTGTCACTATATTTGATGATGCTAAATTTGCGCCAAAC
CTACCTCATCTGGATTATGGATATAAAACTGAAGCCGGTGCAAAAGCAAT
TGAATGGATTAACGAATCACGGCTGGTAGTCAGCACTGATGCAGGTTGCT
TGGAAATATTGGATTTGAAAGAACGTCCTAATTTAGAAAATACTCTTCGT
TTGATTGAGCATGGAGATATGTGCAGCACTGTCAGTGTCAATAAGCAAAC
TGAACAATTGTTATCAGGGGATTACGATAGTATTATTAAACTATGGGACT
TGGAAGTTGATATGTCAATCAATACTTTCAATCTCCATTCTGGTGTTGTT
CACCAGGTCAAATGGAATCAAAATTCTAAAGAAACGTTTGGGTCAGTTTC
TGAGGATCAGCATGTAATGTTATACGATAATCGTAAAGATGAAAGGCCTG
CTTTATGTGTCGGAAAATCCAGGATGTATTTCCCAACTTGTCTGGAATGG
CTTTCCTCTGATGAAATGGCTGTTGGTTTGAGTAATGGTGATATCGTTTT
CTATGATCTTCGTAATTTAAGCGAGGAAATGAAGTCAATAAAAGCACATG
CTAAATATGTCACCACTATTGTagaaaacaatggcataatttTTTCAGGA
TCTGAAGACTGTTATGTTAAAGGACATGATATAAAGTCATTTGATTCAGT
GTATTCAAGTAAGAACCACACTGATTATGTCAAATGTTTGTGTGTAAATC
CTAAAGACAACACTTTGTGGTCTTGTGGCTGGGCTGGCCAAATCTTCTGT
CATGAGAACACGAAAAAAGCTCAGTAAAATTGAAAGTTGAAGAACTAGTT
TTTATAATCTCTTGTATTTTTGTTTACTATTGAAGATAAACAATGGCAGT
AAAATTCAGAATGTCTCTTACCTTAATCAGAGCTGAAAATATTTATGTTA
TTGAAAAAGCAATACTTAAGTCCATTGCGA
Run BLAST on NCBI

protein sequence of TCONS_00016167-protein

>TCONS_00016167-protein ID=TCONS_00016167-protein|Name=TCONS_00016167-protein|organism=Clytia hemisphaerica|type=polypeptide|length=313bp
MVQNLEKPLQEIPQYLEGFSFHESTGQLAVASSNLTGRDWDGAVTIFDDA
KFAPNLPHLDYGYKTEAGAKAIEWINESRLVVSTDAGCLEILDLKERPNL
ENTLRLIEHGDMCSTVSVNKQTEQLLSGDYDSIIKLWDLEVDMSINTFNL
HSGVVHQVKWNQNSKETFGSVSEDQHVMLYDNRKDERPALCVGKSRMYFP
TCLEWLSSDEMAVGLSNGDIVFYDLRNLSEEMKSIKAHAKYVTTIVENNG
IIFSGSEDCYVKGHDIKSFDSVYSSKNHTDYVKCLCVNPKDNTLWSCGWA
GQIFCHENTKKAQ
Run BLAST on NCBI

transcript from alignment at sc0000226:32962..34391

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016167 ID=TCONS_00016167|Name=TCONS_00016167|organism=Clytia hemisphaerica|type=transcript|length=1430bp|location=Sequence derived from alignment at sc0000226:32962..34391 (Clytia hemisphaerica)
TCGCAATGGACTTAAGTATTGCTTTTTCAATAACATAAATATTTTCAGCT
CTGATTAAGGTAAGAGACATTCTGAATTTTACTGCCATTGTTTATCTTCA
ATAGTAAACAAAAATACAAGAGATTATAAAAACTAGTTCTTCAACTTTCA
ATTTTACTGAGCTTTTTTCGTGTTCTCATGACAGAAGATTTGGCCAGCCC
AGCCACAAGACCACAAAGTGTTGTCTTTAGGATTTACACACAAACATTTG
ACATAATCAGTGTGGTTCTTACTTGAATACACTGAATCAAATGACTTTAT
ATCATGTCCTTTAACATAACAGTCTTCAGATCCTGAAAaaattatgccat
tgttttctACAATAGTGGTGACATATTTAGCATGTGCTTTTATTGACTTC
ATTTCCTCGCTTAAATTACGAAGATCATAGAAAACGATATCACCATTACT
CAAACCAACAGCCATTTCATCAGAGGAAAGCCATTCCAGACAAGTTGGGA
AATACATCCTGGATTTTCCGACACATAAAGCAGGCCTTTCATCTTTACGA
TTATCGTATAACATTACATGCTGATCCTCAGAAACTGACCCAAACGTTTC
TTTAGAATTTTGATTCCATTTGACCTGGTGAACAACACCAGAATGGAGAT
TGAAAGTATTGATTGACATATCAACTTCCAAGTCCCATAGTTTAATAATA
CTATCGTAATCCCCTGATAACAATTGTTCAGTTTGCTTATTGACACTGAC
AGTGCTGCACATATCTCCATGCTCAATCAAACGAAGAGTATTTTCTAAAT
TAGGACGTTCTTTCAAATCCAATATTTCCAAGCAACCTGCATCAGTGCTG
ACTACCAGCCGTGATTCGTTAATCCATTCAATTGCTTTTGCACCGGCTTC
AGTTTTATATCCATAATCCAGATGAGGTAGGTTTGGCGCAAATTTAGCAT
CATCAAATATAGTGACAGCACCATCCCAATCCCTACCAGTGAGATTTGAT
GAGGCTACTGCGAGTTGCCCAGTTGATTCATGAAAACTAAACCCCTCTAA
ATATTGAGGTATTTCTTGAAGAggcttttcaagattttgaaccATGTTGA
GTGAGTAatctattttatttatttgaattaaTGGTAAGTATTTTACGTTT
cctaagaaaaaaattatgatttaaTAATACCTGAATTTACCATCATTTTG
TTTATCATCATTCATTTATATACTACTTTTACTAATACTTACTTAAAATG
TACATTTAGAaagctttttctttcaaatgttctaTATAAATATCATGCAG
GGCCCAACAACAGATTTTGGGATACTGTAACAGATTTGGCTTTTTTATCA
TGGGTCAAATATTTTGCATCAGCCAAGATTTTTGTGTGGTTGTGAGTAAT
ATTTTGCTAGCCTTAGGTAGAAAATAATTA

Coding sequence (CDS) from alignment at sc0000226:32962..34391

>TCONS_00016167 ID=TCONS_00016167|Name=TCONS_00016167|organism=Clytia hemisphaerica|type=CDS|length=942bp|location=Sequence derived from alignment at sc0000226:32962..34391 (Clytia hemisphaerica)
TTACTGAGCTTTTTTCGTGTTCTCATGACAGAAGATTTGGCCAGCCCAGC
CACAAGACCACAAAGTGTTGTCTTTAGGATTTACACACAAACATTTGACA
TAATCAGTGTGGTTCTTACTTGAATACACTGAATCAAATGACTTTATATC
ATGTCCTTTAACATAACAGTCTTCAGATCCTGAAAaaattatgccattgt
tttctACAATAGTGGTGACATATTTAGCATGTGCTTTTATTGACTTCATT
TCCTCGCTTAAATTACGAAGATCATAGAAAACGATATCACCATTACTCAA
ACCAACAGCCATTTCATCAGAGGAAAGCCATTCCAGACAAGTTGGGAAAT
ACATCCTGGATTTTCCGACACATAAAGCAGGCCTTTCATCTTTACGATTA
TCGTATAACATTACATGCTGATCCTCAGAAACTGACCCAAACGTTTCTTT
AGAATTTTGATTCCATTTGACCTGGTGAACAACACCAGAATGGAGATTGA
AAGTATTGATTGACATATCAACTTCCAAGTCCCATAGTTTAATAATACTA
TCGTAATCCCCTGATAACAATTGTTCAGTTTGCTTATTGACACTGACAGT
GCTGCACATATCTCCATGCTCAATCAAACGAAGAGTATTTTCTAAATTAG
GACGTTCTTTCAAATCCAATATTTCCAAGCAACCTGCATCAGTGCTGACT
ACCAGCCGTGATTCGTTAATCCATTCAATTGCTTTTGCACCGGCTTCAGT
TTTATATCCATAATCCAGATGAGGTAGGTTTGGCGCAAATTTAGCATCAT
CAAATATAGTGACAGCACCATCCCAATCCCTACCAGTGAGATTTGATGAG
GCTACTGCGAGTTGCCCAGTTGATTCATGAAAACTAAACCCCTCTAAATA
TTGAGGTATTTCTTGAAGAggcttttcaagattttgaaccAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009027XLOC_009027Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016167-proteinTCONS_00016167-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016167-exon-sc0000226-1491911889:32962..34391TCONS_00016167-exon-sc0000226-1491911889:32962..34391Clytia hemisphaericaexon
TCONS_00016167-exon-sc0000226-1510915933:32962..34391TCONS_00016167-exon-sc0000226-1510915933:32962..34391Clytia hemisphaericaexon
TCONS_00016167-exon-sc0000226-1575043694:32962..34391TCONS_00016167-exon-sc0000226-1575043694:32962..34391Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000226supercontigsc0000226:32962..34391 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
109.746	104.186	49.8749	37.272	35.971	26.0096	29.1754	30.4962	21.5714	20.108	16.5736	14.9199	22.0492	23.3799	25.2107	25.7978	25.6514	26.7614	8.30874	9.01771	27.7	23.7198	65.1982	56.0338	18.4059	24.3897	15.1798	14.9247	30.1862	34.7965
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00016167 vs. Swiss-Prot (Human)
Match: MEP50 (Methylosome protein 50 OS=Homo sapiens GN=WDR77 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.662e-34
Identity = 93/293 (31.74%), Postives = 151/293 (51.54%), Query Frame = 3 
Query:  399 HESTGQLAVASSNLTGRDWDGAVTIFDDAKFAPNLPHLDYGYKTEAGAKAIEWINESRLVVSTDAGCLEILDLKERPNL-ENTLRLIEHGDMCSTVSVNKQTEQLLSGDYDSIIKLWDLEVDMSINTFNLHSGVVHQVKWNQNSKETFGSVSEDQHVMLYDNRKDERPALCVGKSRM-YFPTCLEW--LSSDEMAVGLSNGDIVFYDLRNLSEEMKSIKAHAKYVTTIV---ENNGIIFSGSEDCYVKGHDIKSFDSVYSSKNHTDYVKCLCVNPKDNTLW-SCGWAGQIFCH 1253
            + S G L + +S+L+GR W G++ +F D   APN      G +TEAG   + W+ E  ++V++D+G +E+ +L E   L  +     EH D+ STVSV     Q +SG  D  IK+WDL   + ++++  H+  V  V  + +    F S SED  ++L+D R   +PA  +G S   Y PT L W    S+    G  NG +   D ++ S  + S   H++ VT +V    +   + S SEDC +   D  S   ++ S+ H D+V+    +P +++L  + GW  Q+  H
Sbjct:   36 YRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC-PKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSS-AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLD-SSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHH 325
The following BLAST results are available for this feature:
BLAST of TCONS_00016167 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MEP508.662e-3431.74Methylosome protein 50 OS=Homo sapiens GN=WDR77 PE... [more]
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