TCONS_00016167-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016167-protein
Unique NameTCONS_00016167-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length313

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016167-protein ID=TCONS_00016167-protein|Name=TCONS_00016167-protein|organism=Clytia hemisphaerica|type=polypeptide|length=313bp
MVQNLEKPLQEIPQYLEGFSFHESTGQLAVASSNLTGRDWDGAVTIFDDA
KFAPNLPHLDYGYKTEAGAKAIEWINESRLVVSTDAGCLEILDLKERPNL
ENTLRLIEHGDMCSTVSVNKQTEQLLSGDYDSIIKLWDLEVDMSINTFNL
HSGVVHQVKWNQNSKETFGSVSEDQHVMLYDNRKDERPALCVGKSRMYFP
TCLEWLSSDEMAVGLSNGDIVFYDLRNLSEEMKSIKAHAKYVTTIVENNG
IIFSGSEDCYVKGHDIKSFDSVYSSKNHTDYVKCLCVNPKDNTLWSCGWA
GQIFCHENTKKAQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009027XLOC_009027Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016167TCONS_00016167Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 141..181
e-value: 0.024
score: 23.8
coord: 97..138
e-value: 0.028
score: 23.6
coord: 268..307
e-value: 0.018
score: 24.2
coord: 228..265
e-value: 4.6
score: 12.8
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 106..147
score: 11.244
NoneNo IPR availableGENE3D1.10.10.670coord: 136..184
e-value: 5.6E-10
score: 38.5
NoneNo IPR availableGENE3D2.80.10.50coord: 62..135
e-value: 3.5E-7
score: 29.4
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 185..311
e-value: 1.1E-20
score: 73.2
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 125..139
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 106..313
score: 16.401
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 8..306

Blast
[Close]
BLAST of TCONS_00016167-protein vs. Swiss-Prot (Human)
Match: MEP50 (Methylosome protein 50 OS=Homo sapiens GN=WDR77 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.116e-35
Identity = 93/293 (31.74%), Postives = 151/293 (51.54%), Query Frame = 0 
Query:   22 HESTGQLAVASSNLTGRDWDGAVTIFDDAKFAPNLPHLDYGYKTEAGAKAIEWINESRLVVSTDAGCLEILDLKERPNL-ENTLRLIEHGDMCSTVSVNKQTEQLLSGDYDSIIKLWDLEVDMSINTFNLHSGVVHQVKWNQNSKETFGSVSEDQHVMLYDNRKDERPALCVGKSRM-YFPTCLEW--LSSDEMAVGLSNGDIVFYDLRNLSEEMKSIKAHAKYVTTIV---ENNGIIFSGSEDCYVKGHDIKSFDSVYSSKNHTDYVKCLCVNPKDNTLW-SCGWAGQIFCH 306
            + S G L + +S+L+GR W G++ +F D   APN      G +TEAG   + W+ E  ++V++D+G +E+ +L E   L  +     EH D+ STVSV     Q +SG  D  IK+WDL   + ++++  H+  V  V  + +    F S SED  ++L+D R   +PA  +G S   Y PT L W    S+    G  NG +   D ++ S  + S   H++ VT +V    +   + S SEDC +   D  S   ++ S+ H D+V+    +P +++L  + GW  Q+  H
Sbjct:   36 YRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC-PKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSS-AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLD-SSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHH 325
The following BLAST results are available for this feature:
BLAST of TCONS_00016167-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MEP501.116e-3531.74Methylosome protein 50 OS=Homo sapiens GN=WDR77 PE... [more]
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