TCONS_00015989 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00015989
Unique Name	TCONS_00015989
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2200

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000224:403295..410527+
coding sequence from alignment at sc0000224:403295..410527+

transcript sequence

>TCONS_00015989 ID=TCONS_00015989|Name=TCONS_00015989|organism=Clytia hemisphaerica|type=transcript|length=2200bp
ccgagagtatgcgATATGCTCTCCTATTGGATAAAAAACCAATTCCCctt
aaaatcgaattagagagcgtcaattgtACAAACAAATAATGTATATTCTC
TGTAACTCGAATAAGTACATGGactaaaatttgttcgaattatcgAAGag
acttgcttataaggtcttACTTAGTCTTACATATTTCTATCTCGTCTTGT
TTTTTCAGTATCGGCGTTTTATGCTGAATGCGAGAACAAAGATGTCTGCT
TCAACGCTCACATATGGACCAAGTCCAAATTTCTTGGTCTATCTGTTGGT
GTACACATGGCTGGCAATGgCAATGTTTTCGTATCGAAATGGGACGAGGA
ATATATCATGACGTTCCCAAACGCTTACGGAAGATCGATTTTAACAGTAC
CATGGGTAGAGTTGGGCGGTAAAACGGAGATCACGTGTCCAACAACTGGT
TTCAGCGCCCAAATTGAATTCTTAACAAAaCCATTTTATGGAGGGAAAAA
GAATATACTAAGAGCTGAAGTATACGCACCTTCGCAAAAGAAACCTTTTC
TGACGGTCAACGGCCCTTGGAACGGCGTTATGCATGCAAAACGAGCAAAT
TCTTCGGAAACGGAAGTCTTCGTTGACACTTTTACAATGCCAATCGTcga
taaaaaagtgaaaaaggttCCCAAACAACTGGAATTTGAATCGAGGAGGT
TATGGGAGGATGTAACGAACGCGTTGAAAATCAATGATATTGAAAATGCA
ACGGAAGGCAAACATAAGCTGGAAGAAAAGCAACGGCAAGATGCGCGCGT
GCGGAAAGATACCAACACGAAGTGGGTGACGAGGCTTTTCGACGAAGAAG
AAATAGCTGAGGGTGAAAGACTTTTCAATTACAAATGGCCCTTGTATAAA
CGAAAGGGGATGAAGAAACCGGGATCCACTTAAAAAAAATCACTGACAAG
ACAAAGATGCGATTGGCGAAACAAGGCCAGGCCGTTGGTCGGTTGGTCAT
TTGGGTAAGAAAAACTTTGGTTGAAGGTCTAGTCGAGTTTTTCGAAACAG
TGGAACGTTTAAAAGCCAAAATCGATTGTAATAACTGGTTTATTCGATTG
AATCGATTTAATGGGTTTTCACGAAAAAGGAGGTTCGGATGCTATTTGTT
GATTGATCAAGTTGGCTTTAATTTCCCAGGTGTTGGGAAAAATAAACCAT
TTGTTGAAGAGTGCTGGGTAAATTGTTTCGTTGTTATGAGATTGTTGGAA
CACTCTGATTTCAAATCAATGAAAAACTTGacaaaatcgatttttttcca
TCTCGTGATTTTTAAGTCTGTACTGAAACTgaacaaaaattaattttaaa
tctAACCTAGTTTCTTTATCAAACTCAGTTACAAATTGATGTTGAGGAgg
cttctttttcaatttttcagtacacaatctcatttttctattttactgac
caccctggatttatACACTCGAAAATCAGACCCCCTTCTTTTTATCTTCC
TGACCACCCTGGACTTCACACTTCCTCAACTTAGGAGGTACAGACTACAG
ACTATTTTGGAATAGCACATAACTGGGCAGAATTTTACAGAATGTCTTGG
ACAAAATCTCAATTAGTAAATCTCAGTTTCCGTACATTTTATGATACAAA
AATATGCATTTTAAAACTCTAGCATAGGAATTTTACATTTATAGTTtaat
aaaagtgaaaatattacaATTACAACCAACTTGGACTCTGTGAAATGAGG
aattgtgatttatttttttcagcaatattaatttttgatagaatattttg
aaatatattaaTTAAGTTTTAATAGCTTCTGTTtatacaattttcttttt
ttgttaaaataattagaaataaactttaaataagtaaaaatttataactt
tttcaaaatattccatTTTACATATCCGGATGGACTAACCTAGCAAAGTC
GCAGCCGTTTCAGTGCCGTAGCTACCGGAGGTGCTTCCTATGACACTGCG
TTTGGAGAGCAAGTGCTACAAACTTTACTTCTCTTTCTTATATagaacat
tttttagaaaaataagaacactttaagaacgATGTGGTTCTCCCTGGGCT
TCAATTAAGTCCGAATTATCCCTCCCAGTCGTTATCGTCATGGTCATCTG
CTCCCTTAAGTTGATGGCAAGtctttacacccccttctcgcagAGCCGGT

Run BLAST on NCBI

protein sequence of TCONS_00015989-protein

>TCONS_00015989-protein ID=TCONS_00015989-protein|Name=TCONS_00015989-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
MAGNGNVFVSKWDEEYIMTFPNAYGRSILTVPWVELGGKTEITCPTTGFS
AQIEFLTKPFYGGKKNILRAEVYAPSQKKPFLTVNGPWNGVMHAKRANSS
ETEVFVDTFTMPIVDKKVKKVPKQLEFESRRLWEDVTNALKINDIENATE
GKHKLEEKQRQDARVRKDTNTKWVTRLFDEEEIAEGERLFNYKWPLYKRK
GMKKPGST

Run BLAST on NCBI

transcript from alignment at sc0000224:403295..410527+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00015989 ID=TCONS_00015989|Name=TCONS_00015989|organism=Clytia hemisphaerica|type=transcript|length=7233bp|location=Sequence derived from alignment at sc0000224:403295..410527+ (Clytia hemisphaerica)
ccgagagtatgcgATATGCTCTCCTATTGGATAAAAAACCAATTCCCctt
aaaatcgaattagagagcgtcaattgtACAAACAAATAATGTATATTCTC
TGTAACTCGAATAAGTACATGGactaaaatttgttcgaattatcgAAGag
acttgcttataaggtcttACTTAGTCTTACATATTTCTATCTCGTCTTGT
TTTTTCAGTATCGGCGTTTTATGCTGAATGCGAGAACAAAGATGTCTGCT
TCAACGCTCACATATGGACCAAGTCCAAATTTCTTGGTCTATCTGTTGGT
GTACACATGGCTGGCAATGGTATGTAACAGacttaacatttttttatatg
aacaaactatataagaacataaggcttcgatgaccaaaattttaagaata
ttataaggctttgtggactctaaaacacccaatttcttaggaaagtggac
aaaaaatactcacaaaagggtgaaaaataagaacatgttaagtacatttt
taggcttaaaaaactcaaaaagttaagatcaTGCTAaggattcaaatatt
tttgatgttcttataaaaaaacgtgtaattaatCACATTTTCCGCCAATT
TGACTAACGTCCACCGTTATACGCTTTTTGtacgaacaaactatataaaa
atataaggcTTCAATATGGTCCGTTGCTCATAAAGCATTTTCAGAGGTTC
GGAATGGAAGTGCATGTCGGCGATGTACGAAACCCAAACAAGCCTTCGAA
AACTGAATATGCCCAAGGACGCTCTACACAACCCCTGAATCTTTTGATAA
CACAAATCTTGAGCCCATCCGCCTAGATGACAACTGTTTCTTACCGGTCG
TCGATCAGTTTTGCTACCTTGGCACAATACTCTCGAGGAACTGTACTGAT
GAAGCGGATGTAAATAATAGAATACGCAAGGCCAGTAACGCATTCGGAGC
TTTACGTAAGAGTGTCCTGTCCAACTCACACATATCTCTATTCGCCGAAA
GTTCTGTTTACGAAGGGCTTATCTTACCAATCCTCTTATAAGGATCTGAA
TCGTGGTgtctaactgaaaaattgtttAACCTTCTACGCGTATTCCACCG
ACGATGTGTTCGATCGATGTGTGGTGTTACAATGAAACATGTTTTCGAGT
TCCGTTTAACTAATGATGAGTTATTACATAAGTAAAGTCTTTTATCGATT
GATAGTTATGTTTACAAACGGCAGCTCCGATGGCTTGGCCACGTTACACG
TATGAAATATGATCGTTTACCTCGTAAAATGTTGACGTCTTGAGTCTGTT
CCAAAAGGCCAAAAAGAGCCCCTGAATTCACTTATGGTCGGGgtattttc
aaatgtttgaaaaagtgtGAAATTGAGAAAAGTAATTGGTTTTATTATGC
CTTGGATCGAATGAAATGGAATGGATTGANNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNGAATGGATTGATTGCTAATGTATA
GAGTTTATTTCTCTAGtttttacttgaatttctttttcatgtctAGCGCT
ATGATTTTCCTaggacataattttttattatttcttagGCCAATTTCCCT
TGCAGAGATGGTacatctctctctctctttctctctttctcttcaatatg
gtcaaaatgttaagaacaagttaaggctAAGGCTTTGCACAATCTAATTT
ATCAGTAACTTGcgcaaaaatattcacaaaatgctATAATTAAGAACata
gtaagaacatttttaggcttaaaactctgTCACACAACGGtgtttcgcca
ttttttgacaTTGTAAatattagataaacgttgaaactaTGTTATGCGCC
AGCTGGGTATTCTATGGAAACCATGGCGCTCTAAATCCATTAGAACGTCA
TGATGGAAACAAAAATTCCGGAAATTTTACTGGAACCCGCTCGCTGTCTT
TTGGGTAAAATCTAGACCTGCGACataattagtttgttttgccaTCAATG
GGTTGTTTTTTTCGAATTGTGAAGTGAAAAAACCTTGAACTTTctgtatt
ttgtattttgtaggCAATGTTTTCGTATCGAAATGGGACGAGGAATATAT
CATGACGTTCCCAAACGCTTACGGAAGGTAAGAAGTGACAACGTTTGCAT
GAATTTTCTCGACGGCCGCGGGGACGCGCCCATTAGACCTTGTTCGAAAT
CATTTTTTGACAATTATTTGAACTGTTCTAGACAAAATTCGGACCCtgaa
taataaaatttaagactGTAACAGACAAAATTTGTACCCTTTTTTTACGC
AAAGTCTGATACATTTTCCAGAGGACATTGGTAATGGCCCGTCCTGATAT
CTATCTTTGTCTCAGTGaacccaacccccccccccccgggtttaaaactt
tttgttgttttttttcaggtcttatttcaaaaaaatgttaatcTTCTTTT
CATTTAGATCGATTTTAACAGTACCATGGGTAGAGTTGGGCGGTAAAACG
GAGATCACGTGTCCAACAACTGGTTTCAGCGCCCAAATTGAATTCTTAAC
AAAagtatgaaatatttcaaatcaacAGATTCCACAACTGGAATTTTCGC
GGAACAGATTTTCGCGGTTTTTGGACAAATCtgtaaaaatttcttccctt
aaggtacctcCCATAACAATCGAatctcaaatttaaaaaaagatttgact
GCGTGTAATTTGCATGAAATAGATAGATTTATTACTAAACTAAAACATTC
AGTTCGGGAAATTGCATAGAATGACAGCGATGTCAACTGATGTCAAATAT
CGCAGCTTTTTTGCTGCCTTTGAACCAAGAACGGGGTTGCAGGGTCACGA
ACGGGGTTCCAAAATCATCATGTTCATTTTGTAGACCAATCCAAAAGTAG
ACTTCTCACCCTAGGATACTAATTTCCTACCTAGGGATTTTTGTGTTGTT
GGTACACTTTTTGttgctcaaaatttaataatctATCTATCTAAGGGCAT
AGATCTATCTGTTGACttttcgtttttcaaaaataatcttttacttttca
aacattttttttaagataagATAAGACAAAAAGAGGTAAAAGAGATAAAA
TAATACACCCCGACAAGACTAGAGGTTTCATATAATATCCCTTTCGTTTT
AGCCATTTTATGGAGGGAAAAAGAATATACTAAGAGCTGAAGTATAGTAA
GTAATTTTCCTTTCATTTCATGGTCAAATAATACGTGTTATATAGTAATA
TAAGTGTTATATGATAATGTGGCAAATGTAACAGGATATTGTTTGAGTAT
AATGTTCTTCAGTTTTACTCATAAAACTCTACTTTTTATTTAATggtata
ctttaggcgtattTCCTCAAATtcacgaaagtaaatgtcgaaatgcgatt
tttcgacctcgcgaaagtttgtacgcctaaagcatATTCATTCAACTTGT
TAAACtgttaaaaataataaattttcaagGTGTAAAAAAGGTGCCCTTAC
CGTTCACACATGCCCTCCGGTACTGGGTATGCCCGCTCACCCGGGAATTC
AACCCTTttcagtgttaaaagttcttccgtctaaGAGGGATTTTGTCGAA
GTATATAAATACAggcttttccgtctcaaaattctgtatgatttaccaaa
attatcaaaaataaacgCTAGTTTGTCGTGTAAAATCTATTTTCCGTCTC
AGATGTAAACCTTACTTTTCATCCCCAAAATTGTCAATAGTTTTCAAGAC
GTTAATGTTTTGTTTCCACTTATAGCGCACCTTCGCAAAAGAAACCTTTT
CTGACGGTCAACGGCCCTTGGAACGGCGTTATGCATGCAAAACGAGCAAA
TTCTTCGGTAAGTCAGCTCTCAAGAGATGTATTTTTCGTCTGAAAGTTCT
CCACTCAATTTTCTCTTGAATGTTTGTGAACAAAAAGTAGAATCTGTaat
ctttttctattttgttattgttgttgttctCTATAGTAGGGGGGGGGGAT
AATCCTTATGATATGTAGCATCTTTCGTGGGACTCAACCGCATGTGATTG
GTTTGAAAGTAGATAGGATTTTGAAACTAATTTGAGAGAGGACCCGTGGA
TTAGGCATGGCAAAATTTGTTATAGCCAAAAAACTTACGTTGTAAACGTT
GCAAACGTATTTCGGTATAGCAGACCCTGTAACCGCTTAACTTTTAGCAT
TAATTTTTATATGGTagctttgtattttttatatgtAATCCATAACGATA
CAGGGAGGTTTCAAGGGTCTGCTATACCGAAATACGGGCTATTTTCCCTC
AAATACCGCAGCATCTGATTGGCTACCGTTCTTTTACCAGGCTATTATTT
TGCAACGCGATCTATAAAAATCGGTCATCTTTACTTACAGGAAACGGAAG
TCTTCGNGTTGTTATAGCCAAAAAACTGACGTTGTAAACGTTGCAAACTC
CACGTTACTTGGTATTTCGGACCCTGTAACCGCTTAACGTTTAGCAATCA
TTTTTATATGgtagttttgtatttttgtatatGTAATCTATAACCATACA
GGGAGGTTTCAAGGGTTCTGCGATACCGAAATACGGGCTATTTTCCCTCA
AATACCGCAGCATCTGATTGGCTTCCATTCTTTTACCAGGCTATTATTTT
TCAACGCGATCTATAAAAATCGGTCATCTTTACTTACAGGAAACGGAAGT
CTTCGTTGACACTTTTACAATGCCAATCGTcgataaaaaagtgaaaaagg
ttCCCAAACAACTGGAATTTGAATCGAGGAGGTAATTTCTTACTTTCTTT
TacgttcattcattcattcattcattcattcattattTAATCTCTTCCCA
TTCTTGTTATTGCTACAGGTTATGGGAGATTTATTCATTCGTTAAtgcat
tcattcattcatccattCATTCACTCACttgttcattcattcattcattc
attattTAATATCTTCCCACTCTTGTTATTGCTGCAGGTTATGGGAGGAT
GTAACGAACGCGTTGAAAATCAATGATATTGAAAATGCAACGGAAGGCAA
ACATAAGGTATGTTAACGTTTCTGACCCTGCCCAGTTGGACatcgttgtt
tcaacgttcacctaacgttatatggacgttgtgaacgttatatAAACGTC
TAAAAAACgatgtgtgccagctgggttatagCGTAGCTTGATTTCAAATC
TTATTTTACTGAAGCCACCTGAAAATTAGCCAAAttaacaaatcaaaatg
ggtgcgagtcaaaactataaagatatatTAAATCTTACTGTCAGATAGAC
CCGCGTAGTGCagtctatcaaaagtacacccttacagtgtatttcaAGGG
TCTCGGAAAACCTACCCTTATGGGCGGCACCTGCCGTGCAGAGTCGGACC
ATACGACTGATCCCCGGATTGAAAACCGCTTTGGCCTATCCAGAGGATGG
GTattgtattttctttgtatttttagtCTTATCACTTCTCCAATCTCCTT
TTCAATAGCTGGAAGAAAAGCAACGGCAAGATGCGCGCGTGCGGAAAGAT
ACCAACACGAAGTGGGTGACGAGGGTAAGTGAAAGAACCAAGAAACAAAC
TCTCGTTGTTTATTTGCTGTGTAAACCCGTGGTTAATTGCATCATTTTAA
AGTCAAAAGGAGCACAACACTAGAAAAAAAAGATCAGTTATAGCAAAAAA
GCCAGTTatagtaaaaaataaaacagaacAAAAAATCGGTTTAAATGAGG
TACATACTGTCTGTATTAAATGTGTTCGTcagattttctaattttgttgC
CCCCTTTTTCTATCCAGCTTTTCGACGAAGAAGAAATAGCTGAGGGTGAA
AGACTTTTCAATTACAAATGGCCCTTGTATAAACGAAAGGGGATGAAGAA
ACCGGGATCCACTTAAAAAAAATCACTGACAAGACAAAGATGCGATTGGC
GAAACAAGGCCAGGCCGTTGGTCGGTTGGTCATTTGGGTAAGAAAAACTT
TGGTTGAAGGTCTAGTCGAGTTTTTCGAAACAGTGGAACGTTTAAAAGCC
AAAATCGATTGTAATAACTGGTTTATTCGATTGAATCGATTTAATGGGTT
TTCACGAAAAAGGAGGTTCGGATGCTATTTGTTGATTGATCAAGTTGGCT
TTAATTTCCCAGGTGTTGGGAAAAATAAACCATTTGTTGAAGAGTGCTGG
GTAAATTGTTTCGTTGTTATGAGATTGTTGGAACACTCTGATTTCAAATC
AATGAAAAACTTGacaaaatcgatttttttccaTCTCGTGATTTTTAAGT
CTGTACTGAAACTgaacaaaaattaattttaaatctAACCTAGTTTCTTT
ATCAAACTCAGTTACAAATTGATGTTGAGGAggcttctttttcaattttt
cagtacacaatctcatttttctattttactgaccaccctggatttatACA
CTCGAAAATCAGACCCCCTTCTTTTTATCTTCCTGACCACCCTGGACTTC
ACACTTCCTCAACTTAGGAGGTACAGACTACAGACTATTTTGGAATAGCA
CATAACTGGGCAGAATTTTACAGAATGTCTTGGACAAAATCTCAATTAGT
AAATCTCAGTTTCCGTACATTTTATGATACAAAAATATGCATTTTAAAAC
TCTAGCATAGGAATTTTACATTTATAGTTtaataaaagtgaaaatattac
aATTACAACCAACTTGGACTCTGTGAAATGAGGaattgtgatttattttt
ttcagcaatattaatttttgatagaatattttgaaatatattaaTTAAGT
TTTAATAGCTTCTGTTtatacaattttctttttttgttaaaataattaga
aataaactttaaataagtaaaaatttataactttttcaaaatattccatT
TTACATATCCGGATGGACTAACCTAGCAAAGTCGCAGCCGTTTCAGTGCC
GTAGCTACCGGAGGTGCTTCCTATGACACTGCGTTTGGAGAGCAAGTGCT
ACAAACTTTACTTCTCTTTCTTATATagaacattttttagaaaaataaga
acactttaagaacgATGTGGTTCTCCCTGGGCTTCAATTAAGTCCGAATT
ATCCCTCCCAGTCGTTATCGTCATGGTCATCTGCTCCCTTAAGTTGATGG
CAAGtctttacacccccttctcgcagAGCCGGT

Coding sequence (CDS) from alignment at sc0000224:403295..410527+

>TCONS_00015989 ID=TCONS_00015989|Name=TCONS_00015989|organism=Clytia hemisphaerica|type=CDS|length=5643bp|location=Sequence derived from alignment at sc0000224:403295..410527+ (Clytia hemisphaerica)
ATGGCTGGCAATGgCAATGTTTTCGTATCGAAATGGGACGAGGAATATAT
CATGACGTTCCCAAACGCTTACGGAAGATCGATTTTAACAGTACCATGGG
TAGAGTTGGGCGGTAAAACGGAGATCACGTGTCCAACAACTGGTTTCAGC
GCCCAAATTGAATTCTTAACAAAaCCATTTTATGGAGGGAAAAAGAATAT
ACTAAGAGCTGAAGTATACGCACCTTCGCAAAAGAAACCTTTTCTGACGG
TCAACGGCCCTTGGAACGGCGTTATGCATGCAAAACGAGCAAATTCTTCG
GAAACGGAAGTCTTCGTTGACACTTTTACAATGCCAATCGTcgataaaaa
agtgaaaaaggttCCCAAACAACTGGAATTTGAATCGAGGAGGTTATGGG
AGGATGTAACGAACGCGTTGAAAATCAATGATATTGAAAATGCAACGGAA
GGCAAACATAAGCTGGAAGAAAAGCAACGGCAAGATGCGCGCGTGCGGAA
AGATACCAACACGAAGTGGGTGACGAGGCTTTTCGACGAAGAAGAAATAG
CTGAGGGTGAAAGACTTTTCAATTACAAATGGCCCTTGTATAAACGAAAG
GGGATGAAGAAACCGGGATCCACTTAAATGGCTGGCAATGgCAATGTTTT
CGTATCGAAATGGGACGAGGAATATATCATGACGTTCCCAAACGCTTACG
GAAGATCGATTTTAACAGTACCATGGGTAGAGTTGGGCGGTAAAACGGAG
ATCACGTGTCCAACAACTGGTTTCAGCGCCCAAATTGAATTCTTAACAAA
aCCATTTTATGGAGGGAAAAAGAATATACTAAGAGCTGAAGTATACGCAC
CTTCGCAAAAGAAACCTTTTCTGACGGTCAACGGCCCTTGGAACGGCGTT
ATGCATGCAAAACGAGCAAATTCTTCGGAAACGGAAGTCTTCGTTGACAC
TTTTACAATGCCAATCGTcgataaaaaagtgaaaaaggttCCCAAACAAC
TGGAATTTGAATCGAGGAGGTTATGGGAGGATGTAACGAACGCGTTGAAA
ATCAATGATATTGAAAATGCAACGGAAGGCAAACATAAGCTGGAAGAAAA
GCAACGGCAAGATGCGCGCGTGCGGAAAGATACCAACACGAAGTGGGTGA
CGAGGCTTTTCGACGAAGAAGAAATAGCTGAGGGTGAAAGACTTTTCAAT
TACAAATGGCCCTTGTATAAACGAAAGGGGATGAAGAAACCGGGATCCAC
TTAAATGGCTGGCAATGgCAATGTTTTCGTATCGAAATGGGACGAGGAAT
ATATCATGACGTTCCCAAACGCTTACGGAAGATCGATTTTAACAGTACCA
TGGGTAGAGTTGGGCGGTAAAACGGAGATCACGTGTCCAACAACTGGTTT
CAGCGCCCAAATTGAATTCTTAACAAAaCCATTTTATGGAGGGAAAAAGA
ATATACTAAGAGCTGAAGTATACGCACCTTCGCAAAAGAAACCTTTTCTG
ACGGTCAACGGCCCTTGGAACGGCGTTATGCATGCAAAACGAGCAAATTC
TTCGGAAACGGAAGTCTTCGTTGACACTTTTACAATGCCAATCGTcgata
aaaaagtgaaaaaggttCCCAAACAACTGGAATTTGAATCGAGGAGGTTA
TGGGAGGATGTAACGAACGCGTTGAAAATCAATGATATTGAAAATGCAAC
GGAAGGCAAACATAAGCTGGAAGAAAAGCAACGGCAAGATGCGCGCGTGC
GGAAAGATACCAACACGAAGTGGGTGACGAGGCTTTTCGACGAAGAAGAA
ATAGCTGAGGGTGAAAGACTTTTCAATTACAAATGGCCCTTGTATAAACG
AAAGGGGATGAAGAAACCGGGATCCACTTAAATGGCTGGCAATGgCAATG
TTTTCGTATCGAAATGGGACGAGGAATATATCATGACGTTCCCAAACGCT
TACGGAAGATCGATTTTAACAGTACCATGGGTAGAGTTGGGCGGTAAAAC
GGAGATCACGTGTCCAACAACTGGTTTCAGCGCCCAAATTGAATTCTTAA
CAAAaCCATTTTATGGAGGGAAAAAGAATATACTAAGAGCTGAAGTATAC
GCACCTTCGCAAAAGAAACCTTTTCTGACGGTCAACGGCCCTTGGAACGG
CGTTATGCATGCAAAACGAGCAAATTCTTCGGAAACGGAAGTCTTCGTTG
ACACTTTTACAATGCCAATCGTcgataaaaaagtgaaaaaggttCCCAAA
CAACTGGAATTTGAATCGAGGAGGTTATGGGAGGATGTAACGAACGCGTT
GAAAATCAATGATATTGAAAATGCAACGGAAGGCAAACATAAGCTGGAAG
AAAAGCAACGGCAAGATGCGCGCGTGCGGAAAGATACCAACACGAAGTGG
GTGACGAGGCTTTTCGACGAAGAAGAAATAGCTGAGGGTGAAAGACTTTT
CAATTACAAATGGCCCTTGTATAAACGAAAGGGGATGAAGAAACCGGGAT
CCACTTAAATGGCTGGCAATGgCAATGTTTTCGTATCGAAATGGGACGAG
GAATATATCATGACGTTCCCAAACGCTTACGGAAGATCGATTTTAACAGT
ACCATGGGTAGAGTTGGGCGGTAAAACGGAGATCACGTGTCCAACAACTG
GTTTCAGCGCCCAAATTGAATTCTTAACAAAaCCATTTTATGGAGGGAAA
AAGAATATACTAAGAGCTGAAGTATACGCACCTTCGCAAAAGAAACCTTT
TCTGACGGTCAACGGCCCTTGGAACGGCGTTATGCATGCAAAACGAGCAA
ATTCTTCGGAAACGGAAGTCTTCGTTGACACTTTTACAATGCCAATCGTc
gataaaaaagtgaaaaaggttCCCAAACAACTGGAATTTGAATCGAGGAG
GTTATGGGAGGATGTAACGAACGCGTTGAAAATCAATGATATTGAAAATG
CAACGGAAGGCAAACATAAGCTGGAAGAAAAGCAACGGCAAGATGCGCGC
GTGCGGAAAGATACCAACACGAAGTGGGTGACGAGGCTTTTCGACGAAGA
AGAAATAGCTGAGGGTGAAAGACTTTTCAATTACAAATGGCCCTTGTATA
AACGAAAGGGGATGAAGAAACCGGGATCCACTTAAATGGCTGGCAATGgC
AATGTTTTCGTATCGAAATGGGACGAGGAATATATCATGACGTTCCCAAA
CGCTTACGGAAGATCGATTTTAACAGTACCATGGGTAGAGTTGGGCGGTA
AAACGGAGATCACGTGTCCAACAACTGGTTTCAGCGCCCAAATTGAATTC
TTAACAAAaCCATTTTATGGAGGGAAAAAGAATATACTAAGAGCTGAAGT
ATACGCACCTTCGCAAAAGAAACCTTTTCTGACGGTCAACGGCCCTTGGA
ACGGCGTTATGCATGCAAAACGAGCAAATTCTTCGGAAACGGAAGTCTTC
GTTGACACTTTTACAATGCCAATCGTcgataaaaaagtgaaaaaggttCC
CAAACAACTGGAATTTGAATCGAGGAGGTTATGGGAGGATGTAACGAACG
CGTTGAAAATCAATGATATTGAAAATGCAACGGAAGGCAAACATAAGCTG
GAAGAAAAGCAACGGCAAGATGCGCGCGTGCGGAAAGATACCAACACGAA
GTGGGTGACGAGGCTTTTCGACGAAGAAGAAATAGCTGAGGGTGAAAGAC
TTTTCAATTACAAATGGCCCTTGTATAAACGAAAGGGGATGAAGAAACCG
GGATCCACTTAAATGGCTGGCAATGgCAATGTTTTCGTATCGAAATGGGA
CGAGGAATATATCATGACGTTCCCAAACGCTTACGGAAGATCGATTTTAA
CAGTACCATGGGTAGAGTTGGGCGGTAAAACGGAGATCACGTGTCCAACA
ACTGGTTTCAGCGCCCAAATTGAATTCTTAACAAAaCCATTTTATGGAGG
GAAAAAGAATATACTAAGAGCTGAAGTATACGCACCTTCGCAAAAGAAAC
CTTTTCTGACGGTCAACGGCCCTTGGAACGGCGTTATGCATGCAAAACGA
GCAAATTCTTCGGAAACGGAAGTCTTCGTTGACACTTTTACAATGCCAAT
CGTcgataaaaaagtgaaaaaggttCCCAAACAACTGGAATTTGAATCGA
GGAGGTTATGGGAGGATGTAACGAACGCGTTGAAAATCAATGATATTGAA
AATGCAACGGAAGGCAAACATAAGCTGGAAGAAAAGCAACGGCAAGATGC
GCGCGTGCGGAAAGATACCAACACGAAGTGGGTGACGAGGCTTTTCGACG
AAGAAGAAATAGCTGAGGGTGAAAGACTTTTCAATTACAAATGGCCCTTG
TATAAACGAAAGGGGATGAAGAAACCGGGATCCACTTAAATGGCTGGCAA
TGgCAATGTTTTCGTATCGAAATGGGACGAGGAATATATCATGACGTTCC
CAAACGCTTACGGAAGATCGATTTTAACAGTACCATGGGTAGAGTTGGGC
GGTAAAACGGAGATCACGTGTCCAACAACTGGTTTCAGCGCCCAAATTGA
ATTCTTAACAAAaCCATTTTATGGAGGGAAAAAGAATATACTAAGAGCTG
AAGTATACGCACCTTCGCAAAAGAAACCTTTTCTGACGGTCAACGGCCCT
TGGAACGGCGTTATGCATGCAAAACGAGCAAATTCTTCGGAAACGGAAGT
CTTCGTTGACACTTTTACAATGCCAATCGTcgataaaaaagtgaaaaagg
ttCCCAAACAACTGGAATTTGAATCGAGGAGGTTATGGGAGGATGTAACG
AACGCGTTGAAAATCAATGATATTGAAAATGCAACGGAAGGCAAACATAA
GCTGGAAGAAAAGCAACGGCAAGATGCGCGCGTGCGGAAAGATACCAACA
CGAAGTGGGTGACGAGGCTTTTCGACGAAGAAGAAATAGCTGAGGGTGAA
AGACTTTTCAATTACAAATGGCCCTTGTATAAACGAAAGGGGATGAAGAA
ACCGGGATCCACTTAAATGGCTGGCAATGgCAATGTTTTCGTATCGAAAT
GGGACGAGGAATATATCATGACGTTCCCAAACGCTTACGGAAGATCGATT
TTAACAGTACCATGGGTAGAGTTGGGCGGTAAAACGGAGATCACGTGTCC
AACAACTGGTTTCAGCGCCCAAATTGAATTCTTAACAAAaCCATTTTATG
GAGGGAAAAAGAATATACTAAGAGCTGAAGTATACGCACCTTCGCAAAAG
AAACCTTTTCTGACGGTCAACGGCCCTTGGAACGGCGTTATGCATGCAAA
ACGAGCAAATTCTTCGGAAACGGAAGTCTTCGTTGACACTTTTACAATGC
CAATCGTcgataaaaaagtgaaaaaggttCCCAAACAACTGGAATTTGAA
TCGAGGAGGTTATGGGAGGATGTAACGAACGCGTTGAAAATCAATGATAT
TGAAAATGCAACGGAAGGCAAACATAAGCTGGAAGAAAAGCAACGGCAAG
ATGCGCGCGTGCGGAAAGATACCAACACGAAGTGGGTGACGAGGCTTTTC
GACGAAGAAGAAATAGCTGAGGGTGAAAGACTTTTCAATTACAAATGGCC
CTTGTATAAACGAAAGGGGATGAAGAAACCGGGATCCACTTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_008930	XLOC_008930	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00015989-protein	TCONS_00015989-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000224	supercontig	sc0000224:403295..410527 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.01	9.43538	2.60266	1.69753	37.1984	27.7617	29.0718	32.5785	21.2623	27.211	22.3678	17.006	16.1291	16.061	13.9025	18.9045	17.8579	17.0698	13.3541	16.5509	18.7446	18.5548	19.2051	19.2991	48.3263	36.1295	9.60235	8.44864	18.6109	17.1883

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000648	Oxysterol-bd

Blast

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BLAST of TCONS_00015989 vs. Swiss-Prot (Human)
Match: OSBL9 (Oxysterol-binding protein-related protein 9 OS=Homo sapiens GN=OSBPL9 PE=1 SV=2)

HSP 1 Score: 267.314 bits (682), Expect = 1.165e-77
Identity = 140/237 (59.07%), Postives = 172/237 (72.57%), Query Frame = 1

Query:  208 VSAFYAECENKDVCFNAHIWTKSKFLGLSVGVHMAGNGNVFVSKWDEEYIMTFPNAYGRSILTVPWVELGGKTEITCPTTGFSAQIEFLTKPFYGGKKNILRAEVYAPSQKKPFLTVNGPWNGVMHAKRANSSETEVFVDTFTMPIXXXXXXXXXXQLEFESRRLWEDVTNALKINDIENATEGKHKLEEKQRQDARVRKDTNTKWVTRLFDEEEIAEGERLFNYKWPLYKRKGMKK 918
            +SAFYAEC NK + FNAHIWTKSKFLG+S+GVH  G G V    +DE YI+TFPN YGRSILTVPWVELGG+  I C  TG+SA I F TKPFYGGKK+ + AE+++P+ KK F ++ G WNGVM+AK A + E  VFVDT  +PI+ KKV+K+  Q E+ESR LW+DVT  LKI DI+ ATE KH+LEE+QR +AR RK+   +W TRLF E    +GE  + Y  PL KR G  K
Sbjct:  505 ISAFYAECFNKKIQFNAHIWTKSKFLGMSIGVHNIGQGCVSCLDYDEHYILTFPNGYGRSILTVPWVELGGECNINCSKTGYSANIIFHTKPFYGGKKHRITAEIFSPNDKKSFCSIEGEWNGVMYAKYA-TGENTVFVDTKKLPIIKKKVRKLEDQNEYESRSLWKDVTFNLKIRDIDAATEAKHRLEERQRAEARERKEKEIQWETRLFHE----DGE-CWVYDEPLLKRLGAAK 735

The following BLAST results are available for this feature:

BLAST of TCONS_00015989 vs. Swiss-Prot (Human)

BLAST of TCONS_00015989 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
OSBL9	1.165e-77	59.07	Oxysterol-binding protein-related protein 9 OS=Hom...	[more]

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TCONS_00015989 (transcript) - C. hemisphaerica