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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015824 ID=TCONS_00015824|Name=TCONS_00015824|organism=Clytia hemisphaerica|type=transcript|length=4162bpRun BLAST on NCBI protein sequence of TCONS_00015824-protein >TCONS_00015824-protein ID=TCONS_00015824-protein|Name=TCONS_00015824-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1043bp MEVGVKTPLNYQHGAQHDEEDSSLMMADKTQAPHTEEDTHAKIRRKEEYDRun BLAST on NCBI transcript from alignment at sc0000217:6349..35742- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015824 ID=TCONS_00015824|Name=TCONS_00015824|organism=Clytia hemisphaerica|type=transcript|length=29394bp|location=Sequence derived from alignment at sc0000217:6349..35742- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000217:6349..35742- >TCONS_00015824 ID=TCONS_00015824|Name=TCONS_00015824|organism=Clytia hemisphaerica|type=CDS|length=28188bp|location=Sequence derived from alignment at sc0000217:6349..35742- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00015824 vs. Swiss-Prot (Human)
Match: DISP1 (Protein dispatched homolog 1 OS=Homo sapiens GN=DISP1 PE=1 SV=3) HSP 1 Score: 467.233 bits (1201), Expect = 3.760e-139 Identity = 338/1020 (33.14%), Postives = 520/1020 (50.98%), Query Frame = 3
Query: 240 AKIRRKEEYDTVARILRPYCRFLVRWPVLVIG-PVMFVFAWSIILSVIPALGSKDFPDFSEPTKGFEPRGTDISKRAAALSNLDKNRWGDYQLTNVP--------GTNYTGXXXXXXXXXXXXXXXXXXYTDFYF-----------IYKASG--NILTAQNLNNLCRLHKKYLRSYPRYDEYFNTQSDSTHHXX----XXXXXXXXXXDCDTLQENHVDHFKNILKQCYGYYKNGTL-KTCVD----STDAFGCTNVKQLC-HYNTSLHTPSSMKRLVYNSFYYLIDSASHSDLDNVQYTASIDSLTWYLRDPDSGFFEPLYNDRLTDLESVKIGD--VQVAGFNMWNLKFYLFQTEIITQSLYXXXXXXXXXXFIWFYSGSIFIGLMTLACIIIALAISYFVYGRVFDMNFFPFLNMVTLIFIVGIGADDAFVYTGIWGEARQIYPLNMYVYEECLIKWTIHSIRHALLAMLVTSLTTASAFYANVSSVVTSVKCFGLFAGTSIIINYLLMITLFPAVVILHEKYLGK---CMSRLCP-------GACKDPAVPAEHQRVSALQRNLDDISNTLFSQYLPTAIIKFRWIWIVFLLALGIGGCVVTFSSPGLNPPST--GEFQMFTSGSPLEQYDLNLKKLFASGSGSGGDDRH--VSFMFGIKAVDNGYHFDPDSRGTIELYDGLLDLGN--VQTWLKGFCENLIRAPFI-----QRSPSC--ANLQLLYDSLEGACPIGQTTCCNLTLPVASDVFMKCFHSNIEEKTMGRTWF---TIHDPIFDETSDLKVILISAETTYRYTDEFGYNRDASEEVDSWFNEQYSNITSSKFPGFWYIEN-HFYDLQLGLFEGTKESLGIAIGVAFIVILLTTLNVFLSLYSILTITFIISVTVGVLVLSGWKLNILESIVFSVAAGLSADFTLHYSVAYQTSLHKHDRVERVKESLSHIGPAILMGACTTFIAGLVMTPSAVLVYLQMAQFLMLVMFISWLFSTFFFLPVCAVFGPTGNMGQLTCKK 3116
A IR + ++ + Y + WPV+V+G MF+ +++ ++P L PDFS+P GFEPRGT I +R +N+ KN L N P ++ R + + + D +F ++ +SG + + ++C + +RS+P++ + + ++ + NYIA LNN + C + E V H +L+ C +Y+NGTL C D D CTNV + C YN VY +YL+D + Y + + G E + N L + E+ D + G + +K LFQ ++ ++Y AIV+V+L + Y+ S+FI LMT+ II +L +SYF+Y VF FFPF+N+ LI +VGIGADDAFV +W + P + E +I +++HA L+M VTS TTA+AFYAN S +T+++CFG++AGT+I++NY+LM+T PAVV+LHE+YL C + P +C A H+ + A+ + S F + LP +IKFR++W+ + LAL +GG + +P + PS EFQ+F S P E+YD KKLF G++ H ++ ++G+ DNG +P S+G + L D ++ + Q W+ FC+ L F Q SC + ++ + P C + + P ++F C I E + P FD ++ +++ ++TY +T + +EVDSW + + S+ G W++ N FYDLQ L +GT ++G+++ VAF V+LLTT N+ +SLY+I++I I VTVG LVL GW+LN+LES+ SVA GLS DF +HY VAY+ + DR +V SLS +G A+ M A TTF+AG +M PS VL Y Q+ F+ML+M ISW F+TFFF +C GP G GQ+ K
Sbjct: 167 ANIRPSRPF----KLPKSYAALIADWPVVVLGMCTMFIVVCALVGVLVPEL-----PDFSDPLLGFEPRGTAIGQRLVTWNNMVKNTGYKATLANYPFKYADEQAKSHRDDRWSDDHYEREKREVDWNFHKDSFFCDVPSDRYSRVVFTSSGGETLWNLPAIKSMCNVDNSRIRSHPQFGDLCQRTTAASCCPSWTLGNYIAILNNRSSCQKIVERDVSHTLKLLRTCAKHYQNGTLGPDCWDMAARRKDQLKCTNVPRKCTKYNA-----------VYQILHYLVDKDFMTP-KTADYATPALKYSMLFSPTEKG--ESMMNIYLDNFENWNSSDGVTTITGIE-FGIKHSLFQDYLLMDTVYPAIAIVIVLLVMCVYTKSMFITLMTMFAIISSLIVSYFLYRVVFHFEFFPFMNLTALIILVGIGADDAFVLCDVWNYTKFDKP-----HAETSETVSI-TLQHAALSMFVTSFTTAAAFYANYVSNITAIRCFGVYAGTAILVNYVLMVTWLPAVVVLHERYLLNIFTCFKK--PQQQIYDNKSCWTVACQKCHKVLFAI----SEASRIFFEKVLPCIVIKFRYLWLFWFLALTVGGAYIVCINPKMKLPSLELSEFQVFRSSHPFERYDAEYKKLFMFERVHHGEELHMPITVIWGVSPEDNGNPLNPKSKGKLTL-DSSFNIASPASQAWILHFCQKLRNQTFFYQTDEQDFTSCFIETFKQWMENQDCDEPALYPCCSHWSFPYKQEIFELCIKRAIMELERSTGYHLDSKTPGPRFDINDTIRAVVLEFQSTYLFTLAYEKMHQFYKEVDSWISSELSSAPEGLSNG-WFVSNLEFYDLQDSLSDGTLIAMGLSVAVAFSVMLLTTWNIIISLYAIISIAGTIFVTVGSLVLLGWELNVLESVTISVAVGLSVDFAVHYGVAYRLAPDP-DREGKVIFSLSRVGSAMAMAALTTFVAGAMMMPSTVLAYTQLGTFMMLIMCISWAFATFFFQCMCRCLGPQGTCGQIPLPK 1147 The following BLAST results are available for this feature:
BLAST of TCONS_00015824 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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