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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015647 ID=TCONS_00015647|Name=TCONS_00015647|organism=Clytia hemisphaerica|type=transcript|length=2343bp
TTTAGATACAAAACGTTAAAAGTATGCGTCTCGTTAATGTTGTGCTGACT
ATTTTGACATCCAAAATTGCATTAGGAGAGGGAAGACCTCCATCACGTGA
GAGTGATATTGATCAACAATTAATCCGACTAGCCCATGAAATTCGTCGTG
AAATTCAGCCTGGACCGTTCGGAAATTATCGCGGATACGCACCACCTCGA
CTTGGTAAAAGGGAAAATATAGACGGGAAGAAGGGTGTGACGTCACAGAA
GAGAAGGACTGTTGAAGCTTTGGACAAAATTGGACAGATTTTATTGAATC
ATCGCAAAAGCTTGTCTTCAGACTctgaagttttcaaaaatggtaaaaaa
atgaTGACAGATCATTTGGATACAACCTCAAGGAAAAGAACTCATCATTT
TATTAAAGCAAAGAATGTACCATTTTGGTATTTTAACAAAAGAGGATTGT
CAAACCAGGTTGACGGAAAAAAGACCCTGGGTGACGGAAATAAACCGGCG
TTTACTCATCATTCCCAACCTACGTTCGACAAATTTgcagatgacgtcat
cgaaaaactAACTACCCTTAACAAACAAATCAAGCATGACGCAATAAATG
AACGTGATGAAAAGATGAAGAAGAGGGAAAGAGTGGGAATGAAAAGTAAA
TGGAACTTTTGGCCTCCTAGGTTGGGTCGAAAAAGAGAAACCACTTTGAA
CAGAAATATGGAGAAAGCAAAACATCCCTATGATCGAATTCTTGATGata
aaaagggcctgtaaaaaggcacagcgTTTGACGTTGAAATTCTCAATAGC
CCCGATCTCATTATTAAAGGGAATCTTGTCAGTCACCCATGATGATTTTG
GAGTGTAAATAAGTATACTTTTACATTATATTTAGTACAgaattttgctt
tttatttattGACAGTATAAATAGACGAAATAATTTGACATGGTTTTCCA
TTGATGAGAGACTCAAAAGAAAACTTGAAGAAtttaaaagccaaaataaa
tttgaacTGCATGACCTTATTCTATCACTCAATGGAAAGTTCTTTTTGAT
CTTTAAAAAACATTCTTCCGTAGTGGTTTAAGCCTATACTTTCATATCTC
GAGTTTTCATAAATCAGGTCACAAGCACTTCTTCAAATGGTCATCTCGAA
AAGAGGCTGATCAATTTTTGGGATCTTAGAACTCGGCTgATCCAAGACGA
AACATGACACGACTGGTCTTCTTAGTTTTGTTATTACCATGTTGCTGCTT
CTGCGCAGAAACAGAAATCACCGATAAACACACATTATCCACCACGTCTA
TGCGAAATAAGAAAGATGCGACGGATCCACAGTTGCTGTTCTGGCCACGT
GTTGGAAAAAGAGAATCGAACGATTTCAACGAGCTTGATATCGTTGCTGG
TTCTAATGAAGCAGGAAGTAGAAGACAGGCTGTGGACTTTGAAAAGCGTT
TTCCACTCCATCCAATCAATATTGATGAAGCTCAAAACCGGCTTAACACG
AAGGAGTATAGGCTGAGAAAAATCTCGCCCTTCCTTCACCGAAAAACAAG
TTTCTACCTGCCGTTCACGCAACACAATTTAACACCTTTTCTTCATAAAA
GAAGTCCGGAAGATTACTCACAAATGCCGTTTCTACACAAAAGAGAGCTT
CCATTGAGATTCTTGACCCGGAGACGTCAGATGCCGTTTTTACATAAAAG
GGATGACACGCCGTTTCTGCATAAAAGGGATAACACACCGTTTCTATATA
GAAGGGATGACACGCCGTTTCTACATAAAAGACGTGCTACACCGTTTTTA
CATAAAAGACGTAACACGCCGTTTTTACATAAACAAAGTATGTCAACTTA
TGCTATGTAAATGACATTTTAGAAATATGAATATGACTTTTAAACAGTAT
TTAGCGGGAAACTTGATATTTGGACCTCGCCATCGATGAGGAAAAGACTC
AAGTTTTAGACCTTTAGAACCCTTAGAAAAATTCACCACTGAGTTTCTGT
ACATTTCCAATTTAGGACCAAATTTTCTAAATCTTGACCATTTGAAGAGC
AAAAGCTTTGGATTTTTGTGATATGGGACCTTTTATGTGTAAAGAGGTGT
GGAAAGGAATCTCTCACATACAAAGTACCTATCTAAATTCTAAGTGCTCT
ACTTGTCTTGGGGCTTCAATAAAGTTGCGTATAGTGCGCATAGTCTTCTA
AAGACATTTTAAGGAATATGAGGTTTATAACAGTATACTAAGGTAAATGt
acaaaaattattcaaaaaattttcatttaaaattcatgaatcattgaaaa
ttttatttttcttaatttgaaATATCACAAATCAACAAGAGGA Run BLAST on NCBI protein sequence of TCONS_00015647-protein >TCONS_00015647-protein ID=TCONS_00015647-protein|Name=TCONS_00015647-protein|organism=Clytia hemisphaerica|type=polypeptide|length=246bp
MRLVNVVLTILTSKIALGEGRPPSRESDIDQQLIRLAHEIRREIQPGPFG
NYRGYAPPRLGKRENIDGKKGVTSQKRRTVEALDKIGQILLNHRKSLSSD
SEVFKNGKKMMTDHLDTTSRKRTHHFIKAKNVPFWYFNKRGLSNQVDGKK
TLGDGNKPAFTHHSQPTFDKFADDVIEKLTTLNKQIKHDAINERDEKMKK
RERVGMKSKWNFWPPRLGRKRETTLNRNMEKAKHPYDRILDDKKGL Run BLAST on NCBI transcript from alignment at sc0000215:35375..39913+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015647 ID=TCONS_00015647|Name=TCONS_00015647|organism=Clytia hemisphaerica|type=transcript|length=4539bp|location=Sequence derived from alignment at sc0000215:35375..39913+ (Clytia hemisphaerica)
TTTAGATACAAAACGTTAAAAGTATGCGTCTCGTTAATGTTGTGCTGACT
ATTTTGACATCCAAAATTGCATTAGGAGAGGGAAGACCTCCATCACGTGA
GAGTGATATTGATCAACAATTAATCCGACTAGCCCATGAAATTCGTCGTG
AAATTCAGCCTGGACCGTTCGGAAATTATCGCGGATACGCACCACCTCGA
CTTGGTAAAAGGGAAAATATAGACGGGAAGAAGGGTGTGACGTCACAGAA
GAGAAGGACTGTTGAAGCTTTGGACAAAATTGGACAGATTTTATTGAATC
ATCGCAAAAGCTTGTCTTCAGACTctgaagttttcaaaaatggtaaaaaa
atgaTGACAGATCATTTGGATACAACCTCAAGGAAAAGAACTCATCATTT
TATTAAAGCAAAGAATGTACCATTTTGGTATTTTAACAAAAGAGGATTGT
CAAACCAGGTTGACGGAAAAAAGACCCTGGGTGACGGAAATAAACCGGCG
TTTACTCATCATTCCCAACCTACGTTCGACAAATTTgcagatgacgtcat
cgaaaaactAACTACCCTTAACAAACAAATCAAGCATGACGCAATAAATG
AACGTGATGAAAAGATGAAGAAGAGGGAAAGAGTGGGAATGAAAAGTAAA
TGGAACTTTTGGCCTCCTAGGTTGGGTCGAAAAAGAGAAACCACTTTGAA
CAGAAATATGGAGAAAGCAAAACATCCCTATGATCGAATTCTTGATGata
aaaagggcctgtaaaaaggcacagcgTTTGACGTTGAAATTCTCAATAGC
CCCGATCTCATTATTAAAGGGAATCTTGTCAGTCACCCATGATGATTTTG
GAGTGTAAATAAGTATACTTTTACATTATATTTAGTACAgaattttgctt
tttatttattGACAGTATAAATAGACGAAATAATTTGACATGGTTTTCCA
TTGATGAGAGACTCAAAAGAAAACTTGAAGAAtttaaaagccaaaataaa
tttgaacTGCATGACCTTATTCTATCACTCAATGGAAAGTTCTTTTTGAT
CTTTAAAAAACATTCTTCCGTAGTGGTTTAAGCCTATACTTTCATATCTC
GAGTTTTCATAAATCAGGTCACAAGCACTTCTTCAAATGGTCATCTCGAA
AAGAGGCTGATCAATTTTTGGGATCTTAGAACTCGGCTggtaagtttttt
cttttttgaaaagctcttgGATAGTCTAAATTCAGAAGTTTCTGGCTTTA
GATATTCACcacttttaaattgaaaaacgCTTTAAAGCTATTGTTGATTC
TTATTCTCATGTTGACACCCATGTGTCAGTACCTTGGTCAATTCATCTCC
GGTGAGAATCCCCCGGTGAAGGAGAATGTTCCAAAAAAGTTTTCCTTTCG
ATCTATTCGGAAAACGAGTTACCCCTAGCTTAAAAGATAAAGATTTAAAC
CTAAAAGGTTTAGTTTGAAAAGGTTTTTCAAAGTTATTGGAAAAAAGCCC
TGAAACTAAACGTTCATGCTATTCCTTGCGAATTCATTATATCTGAGACT
GTCTaaaagagcccccccccagtggaccctcaattcacgcaatcacacaa
ttttttttcgaaattcacgcattcacgcaaattttcctccagtttcacgc
aataacccaatttttcagaaaatcggaaaattttcgggaaaatcggggaa
acattgggaAATTGGGAACACTGCACACAGTcagtggaaaaaagggaaaa
ttcactaTTCActcacaaaatagcccagattcacccATTCACGCagtcaa
aaagtggattttcatgttcacgcaagttttttcaattttcacgcattcac
gcaaccgaaaatgcccatttacgcattcacgcaaacccctTGGAGGCCTA
AGAGGGAACGCTACGCAACAGCACGTCtgaatacacattttttaaataag
caACAAAGTTACTAAGGCTGAGCCCTGAAATCAGCTAAATACTTTTACTA
TCTCATAAAGGAGaagctttttagataaattTAACTAAGGTAGTATATCC
CTTCAGCCACAAGAATAATATTATAACATGAGGGGTggtcaaagaaaaat
tgagcCATAGAATGCCCTGAGTCTTTGTTGCATATAAAAGTTATATgtag
tttgtttttttaatccTTCTGAATGTGAAAATGTACTCGTCAGTACCTTT
TTCggaaaattgaacatttttcagaaaaaacccGTTGTGGAAATTCCCAG
TTGATTAAATGTCCGCCAGGGTATAGTCGTCCGGGTACGGTCGTGAAATA
ATCCATTCGGGGTCNtaaattgaaaatttttcagaaaaaacccGTTGTGG
AAATTCCCAGTTGATTAAATGTCCGCCAGGGTATAGTCGTCCGGGTACGG
TCGTGAAATAATCCATTCGGGGTCAGTCGAGAAAGCGTCCGTTGGGAAAA
ATCTGTCGGAGAAAGATCCGGTAATGCCCTTTTTTTCTCAGTCACATGTT
TTACCTGGGAACGCTACCAGACATATTCAACTGACGAGattacttttcga
atttaatCGGGTTATAAGCAAAACTAGACTTTCTCTgataaaaaaatgaa
cttttttctccttGTTTTTATGTGATCATTAGGCAAAAATCTATTGTCTA
ATTTATCTACAAAAGATAAGCTAACTGAATTTAAGCTCGGGTTTACAATA
AAATTTGAAgctaattttcaatttcttgtcGTGACCAAGTAGAGGTTTGA
AGGCTACGTACCAACATTCAAGTATAAAAGCAgaatcttttgatttaaaa
tttggtGGGGTTCAAACTTTGAAACTTCACAGGTATTTACCAAACCACAG
ATAGTACAAGAATTTGGGCAATAGTCTCTTTTTCAACCTTTTAAGATCAG
GGCTCCAAAACcaccaaatttggaaaatgccTTTTTTAACAATCTTTAAA
TGAGCCCCCCGCCGAGTGGTTTCCGTAATGGCGTGATTGGCGTTTTTTCA
AGTTCAtgatttcgtgatttaagattttaaagtgaCGAGACTGTATGACC
GGAGGAACCATCCAATgtgatcgtgatagaaaggAAAATTGACTtgtgat
tgcgtgatttgaaagTGACTGGGGGCCTCTTAAATATGTCAtgagatatt
ttttgaatttgctTCTAGCAGGTTCCAAAATCAACATTTCATTACGAATC
ATCATGTTACAATGCGGTTCCAATTATCATCATCCTCCTGCTCCTCTCTG
ACTGATTTATAACATAAAGGAACGCTACTTTATTCGATTTGTTACCTTCT
AGAGGTGGAATGTGACAAATCTAATGAAACAGAATCTTAATTTTTCAGCC
TGAAATCATAGCGTGCCTTTTTAATTTGCTTTTAGATCCAAGACGAAACA
TGACACGACTGGTCTTCTTAGTTTTGTTATTACCATGTTGCTGCTTCTGC
GCAGAAACAGAAATCACCGATAAACACACATTATCCACCACGTCTATGCG
AAATAAGAAAGATGCGACGGATCCACAGTTGCTGTTCTGGCCACGTGTTG
GAAAAAGAGAATCGAACGATTTCAACGAGCTTGATATCGTTGCTGGTTCT
AATGAAGCAGGAAGTAGAAGACAGGCTGTGGACTTTGAAAAGCGTTTTCC
ACTCCATCCAATCAATATTGATGAAGCTCAAAACCGGCTTAACACGAAGG
AGTATAGGCTGAGAAAAATCTCGCCCTTCCTTCACCGAAAAACAAGTTTC
TACCTGCCGTTCACGCAACACAATTTAACACCTTTTCTTCATAAAAGAAG
TCCGGAAGATTACTCACAAATGCCGTTTCTACACAAAAGAGAGCTTCCAT
TGAGATTCTTGACCCGGAGACGTCAGATGCCGTTTTTACATAAAAGGGAT
GACACGCCGTTTCTGCATAAAAGGGATAACACACCGTTTCTATATAGAAG
GGATGACACGCCGTTTCTACATAAAAGACGTGCTACACCGTTTTTACATA
AAAGACGTAACACGCCGTTTTTACATAAACAAAGTATGTCAACTTATGCT
ATGTAAATGACATTTTAGAAATATGAATATGACTTTTAAACAGTATTTAG
CGGGAAACTTGATATTTGGACCTCGCCATCGATGAGGAAAAGACTCAAGT
TTTAGACCTTTAGAACCCTTAGAAAAATTCACCACTGAGTTTCTGTACAT
TTCCAATTTAGGACCAAATTTTCTAAATCTTGACCATTTGAAGAGCAAAA
GCTTTGGATTTTTGTGATATGGGACCTTTTATGTGTAAAGAGGTGTGGAA
AGGAATCTCTCACATACAAAGTACCTATCTAAATTCTAAGTGCTCTACTT
GTCTTGGGGCTTCAATAAAGTTGCGTATAGTGCGCATAGTCTTCTAAAGA
CATTTTAAGGAATATGAGGTTTATAACAGTATACTAAGGTAAATGtacaa
aaattattcaaaaaattttcatttaaaattcatgaatcattgaaaatttt
atttttcttaatttgaaATATCACAAATCAACAAGAGGA Coding sequence (CDS) from alignment at sc0000215:35375..39913+ >TCONS_00015647 ID=TCONS_00015647|Name=TCONS_00015647|organism=Clytia hemisphaerica|type=CDS|length=741bp|location=Sequence derived from alignment at sc0000215:35375..39913+ (Clytia hemisphaerica)
ATGCGTCTCGTTAATGTTGTGCTGACTATTTTGACATCCAAAATTGCATT
AGGAGAGGGAAGACCTCCATCACGTGAGAGTGATATTGATCAACAATTAA
TCCGACTAGCCCATGAAATTCGTCGTGAAATTCAGCCTGGACCGTTCGGA
AATTATCGCGGATACGCACCACCTCGACTTGGTAAAAGGGAAAATATAGA
CGGGAAGAAGGGTGTGACGTCACAGAAGAGAAGGACTGTTGAAGCTTTGG
ACAAAATTGGACAGATTTTATTGAATCATCGCAAAAGCTTGTCTTCAGAC
TctgaagttttcaaaaatggtaaaaaaatgaTGACAGATCATTTGGATAC
AACCTCAAGGAAAAGAACTCATCATTTTATTAAAGCAAAGAATGTACCAT
TTTGGTATTTTAACAAAAGAGGATTGTCAAACCAGGTTGACGGAAAAAAG
ACCCTGGGTGACGGAAATAAACCGGCGTTTACTCATCATTCCCAACCTAC
GTTCGACAAATTTgcagatgacgtcatcgaaaaactAACTACCCTTAACA
AACAAATCAAGCATGACGCAATAAATGAACGTGATGAAAAGATGAAGAAG
AGGGAAAGAGTGGGAATGAAAAGTAAATGGAACTTTTGGCCTCCTAGGTT
GGGTCGAAAAAGAGAAACCACTTTGAACAGAAATATGGAGAAAGCAAAAC
ATCCCTATGATCGAATTCTTGATGataaaaagggcctgtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015647-exon-sc0000215-1491911889:35375..36563 | TCONS_00015647-exon-sc0000215-1491911889:35375..36563 | Clytia hemisphaerica | exon |
| TCONS_00015647-exon-sc0000215-1510915933:35375..36563 | TCONS_00015647-exon-sc0000215-1510915933:35375..36563 | Clytia hemisphaerica | exon |
| TCONS_00015647-exon-sc0000215-1575043694:35375..36563 | TCONS_00015647-exon-sc0000215-1575043694:35375..36563 | Clytia hemisphaerica | exon |
| TCONS_00015647-exon-sc0000215-1491911889:38760..39913 | TCONS_00015647-exon-sc0000215-1491911889:38760..39913 | Clytia hemisphaerica | exon |
| TCONS_00015647-exon-sc0000215-1510915933:38760..39913 | TCONS_00015647-exon-sc0000215-1510915933:38760..39913 | Clytia hemisphaerica | exon |
| TCONS_00015647-exon-sc0000215-1575043694:38760..39913 | TCONS_00015647-exon-sc0000215-1575043694:38760..39913 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000215 | supercontig | sc0000215:35375..39913 + |
Blast
The following BLAST results are available for this feature:
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