TCONS_00015258 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015258
Unique NameTCONS_00015258
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1302

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015258 ID=TCONS_00015258|Name=TCONS_00015258|organism=Clytia hemisphaerica|type=transcript|length=1302bp
TGCAAATGAAAATAGTTAAGTTTTGTCACACAATATTGTATATCAAAATT
GCATGAAGGTTGTTTATAAAAACTAAAGTCTGTGAACACAGTTTAAAAAA
GTCACAAACCAGATAAAAGAGCGAGAAAGAGAACATATAGTAGAGGAAAT
TCATAGTTATTAGTAAGCAGTTTATGCAGTATTTCTGTTGAAAATGCTTC
GTTATGGGTTATTAATTTGCCTGCTGGCTAGCACATCTTTTGGGAAGCCA
GCtgatagttttgaaaaaacttcaatTGAAATCAACAATggtgaaaatat
tgaaaaatatgaatTGGAAGAAAttcGTGGACCTGAATCGTCGCCAATCC
CATCCTATTTTTTCCAAGGGGATATGTTGATGCGTAAAGgTACGCTCGCT
AAAGCGTTAGAAGGAAAAGATGTGACAAAGGAGGACAACAGAGCATGCGC
GAATCCACCATGTGCAGCCGCTGCTGGTTTTATCGCAAGTAGTTTGGCGA
AATGGCCCAATCCTCGACGAATCCCTTACGTCATGAGTAAGAGCGCAAAG
TGTAGCGTTTTCGGTCGTATCAGTCATTTCTTTAAATCCTTATTCGACAA
ATCGAAGAAATGTCATGAAACAGCCATTCGAGATGGCATCAAGGAATGgg
aaagaaaaacgtgtattcgtTTTGTGGAGATTGATTCTGACGATGCTTCT
AAGGAGGATGGTTATATTGAATTCACCAGTGGCAAGAAACGACAATGTTA
CGCACACGTAGGCTTTATCGGTGGTCGTCAGGTGGTCAATATCGATGATG
GATGTAGCACTACAGGGATCGTCCTTCACGAACTTGGACACGCTTTGGGA
CTCCATCATGAGCAAAGTCGACCAGATAGGGATTCCTATGTCAGGATAta
caatgaaaacattaaagaAGGGACAGAATTGAATTTCAAGAAATATTCAT
TCTCTGAAGTTAACGCAGTCGgaaCGCCCTATGATTATGGATCAATCATG
CACTATAATCTTTattcattttccaaaaataaacgCAAGACGTTAGATGC
TATTCGTCCGGTACCGAGTGGAACCGACATCGGCCAACGtaaatatttga
gtaaatatGATATCCAAGCTGTCAAGAACTATTATGGCTGCTAAAAAGAA
TCAATTGCCACTTTAATATATACAGTATGATATAAAATAAAGGATTGTAT
TCTTGTATTCGCCttattttgatgaatttaatGGAGGACTAgtttaataa
agaaaaatgagttACTGGTTTATCAAAGTTTCATGTCTTCTAGAGTTTTC
AT
Run BLAST on NCBI

protein sequence of TCONS_00015258-protein

>TCONS_00015258-protein ID=TCONS_00015258-protein|Name=TCONS_00015258-protein|organism=Clytia hemisphaerica|type=polypeptide|length=316bp
MLRYGLLICLLASTSFGKPADSFEKTSIEINNGENIEKYELEEIRGPESS
PIPSYFFQGDMLMRKGTLAKALEGKDVTKEDNRACANPPCAAAAGFIASS
LAKWPNPRRIPYVMSKSAKCSVFGRISHFFKSLFDKSKKCHETAIRDGIK
EWERKTCIRFVEIDSDDASKEDGYIEFTSGKKRQCYAHVGFIGGRQVVNI
DDGCSTTGIVLHELGHALGLHHEQSRPDRDSYVRIYNENIKEGTELNFKK
YSFSEVNAVGTPYDYGSIMHYNLYSFSKNKRKTLDAIRPVPSGTDIGQRK
YLSKYDIQAVKNYYGC
Run BLAST on NCBI

transcript from alignment at sc0000208:103425..108621+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015258 ID=TCONS_00015258|Name=TCONS_00015258|organism=Clytia hemisphaerica|type=transcript|length=5197bp|location=Sequence derived from alignment at sc0000208:103425..108621+ (Clytia hemisphaerica)
TGCAAATGAAAATAGTTAAGTTTTGTCACACAATATTGTATATCAAAATT
GCATGAAGGTTGTTTATAAAAACTAAAGTCTGTGAACACAGTTTAAAAAA
GTCACAAACCAGATAAAAGAGCGAGAAAGAGAACATATAGTAGAGGAAAT
TCATAGTTATTAGTAAGCAGTTTATGCAGTATTTCTGTTGAAAATGCTTC
GTTATGGGTTATTAATTTGCCTGCTGGCTAGCACATCTTTTGGGAAGCCA
GCtgatagttttgaaaaaacttcaatTGAAATCAACAATggtgaaaatat
tgaaaaatatgaatTGGAAGAAAGTAAGaacgatttttaaaaagaatagg
ACTTGTAAACTATTATTGAGGCAAGGCtgtttttacttctttttttgGCT
CAAGGTGTACACTACCTTAGGTGAGGCCCTTAGTTAAGGGTGCGTAATTT
AGGCTttccaaagtgcactgtaagggttaaAAAGCCTTTAAGGAAGTGTG
ACCATTTCTGCACGAAAACTTGTACAAATTTGATTCTTTGCCGACCGGCA
AAGGTCCAGTTTTGAGGCCCTGATTTACGTCTGCACATGGTAGTTCTCAA
ATCGAGTCCGCCACCTTTCTTTGCCAGTTAGGCTGGCTGATCTGTAAATT
TATTAAACTTGCTGCCGAGAACCCTAACAATAGGCTagataaaattttta
tcaatgtttaaaataattgtattattttattttttttagttcGTGGACCT
GAATCGTCGCCAATCCCATCCTATTTTTTCCAAGGGGATATGTTGATGCG
TAAAGGTAAGATTTCTTGGCTTAAAATATCATTTGTTTTATGGGAACTGT
TTGTAGTTTGTTGATGTAGTGACCCAAAAATCACTGAAGAATGGTGGATG
GCACCTGGACAACAGTCAGTAAATAGGAAACAGTCATTTCACAAGTAAAG
ACATTTCTTTTGCAGCATCATGATGAGAATCGAGTGAGAGAGAACTGTCT
AAGTCCCCATGCTCTTGTTGGGAATCTGGGATTTAGGGTCAGActcagtt
ccagtccctaaaggCATAGGTAAACGAGGAAAATAAACAAATGACAAAGG
GCAAAAAAACACAGAAGGGAACGATGACTCTGACTCCTTGACCCAAATTC
TGTTCTGTAAAATAAATTTAGGTGTATATTAGATTTCGATGAATTGACCA
GGAGAAGCCACCTAGTCCATCCTCGGGCGTTTTAAATTCAAAGATTACAA
GACTCTTGACCTTTTatatgtttttgttgattttaaaggTACGCTCGCTA
AAGCGTTAGAAGGAAAAGATGTGACAAAGGAGGACAACAGAGCATGCGCG
AATCCACCATGTGCAGCCGCTGCTGGTTTTATCGCAAGTAGTTTGGCGAA
ATGGCCCAATCCTCGACGAATCCCTTACGTCATGAGTAAGAGCGCAAGTA
AGTTGACTGGAATTTAATCAAATCATCTCagctttaaaaaaagtaaaaat
attataGTATAAAGAGTCTAAACTTTTCGCCAGAGTCcttaagaaaatga
gaaaacaaaAAGGGGGCTACCTTTTTTGGTTATTTGGCAATATttctttt
tactcatttttgggGTTTAGAGTTTTGCCTGTAGCGTTATTTTTTTGCTG
TTAAAAATTTGCCAGGCCTAATTCGAGAACCTCTTCTGAAGAATTCTCAA
ATCCTATCCATTTTTGAACTAACCATGTGCGGTTGCATTCGAAAAAACAT
GTCATTGTTTCCAATGATTTTTGATTCCCGGACAATCCCCCCCTGGTGAA
TCCCCCCCGGTGAACCCCCCCCTCCTGGTGAACtaaaaaatcatgtaatt
tGAAATTAGCGATTTTACTATTTATCTTATAAAAATCTGTGTAGACGACT
ATcatgtaaaaatctttcagAGCTTTTCTCTGAATCAAAAAAATGGCCGT
TGTGATTCTTAATAAACTTTGTAGACTATCATGTAAAAATCCTTGACCCT
AAAATTGGAGGTTTGTTtcgattgaaagttttaaattagtctctctaagg
gtcggaaaatttaggatttttaggaaattttttgatttccagagaaaaaa
ttgtaataaagtctcatAATAAAAGGGcatgacttttttcaaagatctaa
aaaaaaattcaaaaagtctctctaagggtcaccttttcagcaaaaatcag
tctctctaagggtcggttttcggagggcccgtccgcacatacctctcatt
caccaaccctagtacccccccccggggttacaGTCCATGATTTGGAAATT
TAAAAacacatatgaaaatatatgggtgggaattcaccagggggaaattc
accgggtgggaattttccggggggaattcaccaggggggaatttacTGGG
GGGGATTCaccggggggaattcaccagggggggaattgtccggacACCGT
TTCCAACGAAGATTGGTctatattttaattttcttcaGCAGAAAAGGTGA
AATACTCAAATATGACTTTAAAGTCTCTCTTTTAATTATCAAGGTGACAT
TTACGATTTCAAGTCAGTTTTCTCCTCTCTAATGACTGCTTCTACACCAT
CACTTGAAATCAAGAAGAATGATCAAATCCTTGGTCATAACTATACGGTA
gccgaaaaatatcaaaatgattCTCCTTTCTTTATTTCAGAGTGTAGCGT
TTTCGGTCGTATCAGTCATTTCTTTAAATCCTTATTCGACAAATCGAAGA
AATGTCATGAAACAGCCATTCGAGATGGCATCAAGGAATGggaaagaaaa
acgtgtattcgtTTTGTGGAGATTGATTCTGACGATGCTTCTAAGGAGGA
TGGTTATATTGAATTCACCAGTGGCAAGAAACGACAGTAAGCTCTACAGT
TAAGCCTTCTACCGTTCCGAAAAAAATGAAGCCGTTCTATTAGTCCAGTT
TGATTCTTATGTCACTTTTAACCAATGGAATAGCTTAATTCCGTTTCGGT
ACGAAACCGTTATCTTGTGAACATAGAATTAGACAGTACTGTTCCGAAAC
AAAGTTCAGCCAAATCTCTCCTAAATTTAATTGGAAAGTATTAATAAACT
CTTATCTTAAAGTGAATTTGTTGGGATGAATAACTCTTTTCTAACCCTCC
TCTAAATCCGCTAATGTAAATACATCACCTACATCATTCAAATCCACTGA
CAATCAGTAGACTCTAGATGAAAAAAAAGGTTGTCTACTATTTTTagcat
tcgagttatagaggttcgagttaaagagactacactattcatgatatgca
ccattgcaatgtcttctgatattacatcacggacccagcagctgattggt
tgtaagtgacgtaaaatcaatcaatacgtcattttcaaccaatcagctgt
tggatccgtggaagacattgcaatggtgcatatcatgaatattaatCTTA
TTTTTGTAGATGTTACGCACACGTAGGCTTTATCGGTGGTCGTCAGGTGG
TCAATATCGATGATGGATGTAGCACTACAGGGATCGTCCTTCACGAACTT
GGACACGCTTTGGGACTCCATCATGAGCAAAGTCGACCAGATAGGGATTC
CTATGTCAGGATAtacaatgaaaacattaaagaAGGTTAATATGAGCAAC
ATTTGTCCTTGAACATTATCACAATAACATCAGGCCGATTCCCTTGTCCC
TTGTCCGAGGTTTAATTAAAAATCTTGAAGACTAAGTCGAATAGTTTTTT
TTGAACATGCAAAAttatattctagagaaaaagtatAACATTTCTAATCC
AACTCGAACACAGTCCTTTCGGTTCTCTTTTTTATGATTGTGGTAGCAAC
TCATATGCAACGAGTAAAGTTAAAAGGTTTTCCAATAGCTTTGGGTTTCT
GATGTATTTTCatcaaaactttctttcttcAGGGACAGAATTGAATTTCA
AGAAATATTCATTCTCTGAAGTTAACGCAGTCGGTAAGCAAACTCTCTCC
AATATTTCTGATGTTACAACGTTTTTTTACGTGTTATCAGGCGATATGGA
CTATTATCAACATTACCCTGTCTTTCATGATTCCATAGGCTGGTTTAGAc
ctttgagtttaaagcccgaagggctagagtagaagcTCTAACCTttttca
ggcaagaaaaagtgaagccttaaaaaatgcgccgtatctttgacgacaga
ttgaatctagcaattccttggTTTactttacgattgatatttttttcgaa
atttagtggtaagttttagtttcaatctgtcatttgtgtaaaaaccaggc
gagccgctcaagaccgcgtaactttggtaggatttgttggcttcaaatcc
taccaaggagattctattctagcccttcgggcttatacttcattggttta
GACCATGTCAAACTTATCAGATGAAgaaatttgtaattgtaatttcattg
tcttttaacgagcgttgcactcattcgcatgtttccgacgcacttgctct
attgtcttagaTTCGCCAGTGTTTTTAGTGTCTCATCCTTTCGTCGAGAT
GgaaattctatcaaaatcccCAGCTCACCAACCAAATCAATTGGAACTGA
ATATCCTATTTGCTATACAATCTTATCAAGTGAAAAATCATCTGGAAACT
TTAACCCCACTGGGAGGGTGCCCtaaaattttatccccattaTAATTGAA
AGGAAAAAGTTGCAGTTCACTGGGGTTTTTGAGCTGGTaatgatacaccc
ccttctcacagacctggtaagAGTAAGaataatggactgaaactcgaaac
aggtttttttcaaCCCTTCTAGAGCGAATAGAGATACATCTAaacaatca
aatttttcaattttaggaaCGCCCTATGATTATGGATCAATCATGCACTA
TAATCTTTattcattttccaaaaataaacgCAAGACGTTAGATGCTATTC
GTCCGGTACCGAGTGGAACCGACATCGGCCAACGtaaatatttgagtaaa
tatGATATCCAAGCTGTCAAGAACTATTATGGCTGCTAAAAAGAATCAAT
TGCCACTTTAATATATACAGTATGATATAAAATAAAGGATTGTATTCTTG
TATTCGCCttattttgatgaatttaatGGAGGACTAgtttaataaagaaa
aatgagttACTGGTTTATCAAAGTTTCATGTCTTCTAGAGTTTTCAT

Coding sequence (CDS) from alignment at sc0000208:103425..108621+

>TCONS_00015258 ID=TCONS_00015258|Name=TCONS_00015258|organism=Clytia hemisphaerica|type=CDS|length=6657bp|location=Sequence derived from alignment at sc0000208:103425..108621+ (Clytia hemisphaerica)
ATGCTTCGTTATGGGTTATTAATTTGCCTGCTGGCTAGCACATCTTTTGG
GAAGCCAGCtgatagttttgaaaaaacttcaatTGAAATCAACAATggtg
aaaatattgaaaaatatgaatTGGAAGAAAttcGTGGACCTGAATCGTCG
CCAATCCCATCCTATTTTTTCCAAGGGGATATGTTGATGCGTAAAGgTAC
GCTCGCTAAAGCGTTAGAAGGAAAAGATGTGACAAAGGAGGACAACAGAG
CATGCGCGAATCCACCATGTGCAGCCGCTGCTGGTTTTATCGCAAGTAGT
TTGGCGAAATGGCCCAATCCTCGACGAATCCCTTACGTCATGAGTAAGAG
CGCAAAGTGTAGCGTTTTCGGTCGTATCAGTCATTTCTTTAAATCCTTAT
TCGACAAATCGAAGAAATGTCATGAAACAGCCATTCGAGATGGCATCAAG
GAATGggaaagaaaaacgtgtattcgtTTTGTGGAGATTGATTCTGACGA
TGCTTCTAAGGAGGATGGTTATATTGAATTCACCAGTGGCAAGAAACGAC
AATGTTACGCACACGTAGGCTTTATCGGTGGTCGTCAGGTGGTCAATATC
GATGATGGATGTAGCACTACAGGGATCGTCCTTCACGAACTTGGACACGC
TTTGGGACTCCATCATGAGCAAAGTCGACCAGATAGGGATTCCTATGTCA
GGATAtacaatgaaaacattaaagaAGGGACAGAATTGAATTTCAAGAAA
TATTCATTCTCTGAAGTTAACGCAGTCGgaaCGCCCTATGATTATGGATC
AATCATGCACTATAATCTTTattcattttccaaaaataaacgCAAGACGT
TAGATGCTATTCGTCCGGTACCGAGTGGAACCGACATCGGCCAACGtaaa
tatttgagtaaatatGATATCCAAGCTGTCAAGAACTATTATGGCTGCTA
AATGCTTCGTTATGGGTTATTAATTTGCCTGCTGGCTAGCACATCTTTTG
GGAAGCCAGCtgatagttttgaaaaaacttcaatTGAAATCAACAATggt
gaaaatattgaaaaatatgaatTGGAAGAAAttcGTGGACCTGAATCGTC
GCCAATCCCATCCTATTTTTTCCAAGGGGATATGTTGATGCGTAAAGgTA
CGCTCGCTAAAGCGTTAGAAGGAAAAGATGTGACAAAGGAGGACAACAGA
GCATGCGCGAATCCACCATGTGCAGCCGCTGCTGGTTTTATCGCAAGTAG
TTTGGCGAAATGGCCCAATCCTCGACGAATCCCTTACGTCATGAGTAAGA
GCGCAAAGTGTAGCGTTTTCGGTCGTATCAGTCATTTCTTTAAATCCTTA
TTCGACAAATCGAAGAAATGTCATGAAACAGCCATTCGAGATGGCATCAA
GGAATGggaaagaaaaacgtgtattcgtTTTGTGGAGATTGATTCTGACG
ATGCTTCTAAGGAGGATGGTTATATTGAATTCACCAGTGGCAAGAAACGA
CAATGTTACGCACACGTAGGCTTTATCGGTGGTCGTCAGGTGGTCAATAT
CGATGATGGATGTAGCACTACAGGGATCGTCCTTCACGAACTTGGACACG
CTTTGGGACTCCATCATGAGCAAAGTCGACCAGATAGGGATTCCTATGTC
AGGATAtacaatgaaaacattaaagaAGGGACAGAATTGAATTTCAAGAA
ATATTCATTCTCTGAAGTTAACGCAGTCGgaaCGCCCTATGATTATGGAT
CAATCATGCACTATAATCTTTattcattttccaaaaataaacgCAAGACG
TTAGATGCTATTCGTCCGGTACCGAGTGGAACCGACATCGGCCAACGtaa
atatttgagtaaatatGATATCCAAGCTGTCAAGAACTATTATGGCTGCT
AAATGCTTCGTTATGGGTTATTAATTTGCCTGCTGGCTAGCACATCTTTT
GGGAAGCCAGCtgatagttttgaaaaaacttcaatTGAAATCAACAATgg
tgaaaatattgaaaaatatgaatTGGAAGAAAttcGTGGACCTGAATCGT
CGCCAATCCCATCCTATTTTTTCCAAGGGGATATGTTGATGCGTAAAGgT
ACGCTCGCTAAAGCGTTAGAAGGAAAAGATGTGACAAAGGAGGACAACAG
AGCATGCGCGAATCCACCATGTGCAGCCGCTGCTGGTTTTATCGCAAGTA
GTTTGGCGAAATGGCCCAATCCTCGACGAATCCCTTACGTCATGAGTAAG
AGCGCAAAGTGTAGCGTTTTCGGTCGTATCAGTCATTTCTTTAAATCCTT
ATTCGACAAATCGAAGAAATGTCATGAAACAGCCATTCGAGATGGCATCA
AGGAATGggaaagaaaaacgtgtattcgtTTTGTGGAGATTGATTCTGAC
GATGCTTCTAAGGAGGATGGTTATATTGAATTCACCAGTGGCAAGAAACG
ACAATGTTACGCACACGTAGGCTTTATCGGTGGTCGTCAGGTGGTCAATA
TCGATGATGGATGTAGCACTACAGGGATCGTCCTTCACGAACTTGGACAC
GCTTTGGGACTCCATCATGAGCAAAGTCGACCAGATAGGGATTCCTATGT
CAGGATAtacaatgaaaacattaaagaAGGGACAGAATTGAATTTCAAGA
AATATTCATTCTCTGAAGTTAACGCAGTCGgaaCGCCCTATGATTATGGA
TCAATCATGCACTATAATCTTTattcattttccaaaaataaacgCAAGAC
GTTAGATGCTATTCGTCCGGTACCGAGTGGAACCGACATCGGCCAACGta
aatatttgagtaaatatGATATCCAAGCTGTCAAGAACTATTATGGCTGC
TAAATGCTTCGTTATGGGTTATTAATTTGCCTGCTGGCTAGCACATCTTT
TGGGAAGCCAGCtgatagttttgaaaaaacttcaatTGAAATCAACAATg
gtgaaaatattgaaaaatatgaatTGGAAGAAAttcGTGGACCTGAATCG
TCGCCAATCCCATCCTATTTTTTCCAAGGGGATATGTTGATGCGTAAAGg
TACGCTCGCTAAAGCGTTAGAAGGAAAAGATGTGACAAAGGAGGACAACA
GAGCATGCGCGAATCCACCATGTGCAGCCGCTGCTGGTTTTATCGCAAGT
AGTTTGGCGAAATGGCCCAATCCTCGACGAATCCCTTACGTCATGAGTAA
GAGCGCAAAGTGTAGCGTTTTCGGTCGTATCAGTCATTTCTTTAAATCCT
TATTCGACAAATCGAAGAAATGTCATGAAACAGCCATTCGAGATGGCATC
AAGGAATGggaaagaaaaacgtgtattcgtTTTGTGGAGATTGATTCTGA
CGATGCTTCTAAGGAGGATGGTTATATTGAATTCACCAGTGGCAAGAAAC
GACAATGTTACGCACACGTAGGCTTTATCGGTGGTCGTCAGGTGGTCAAT
ATCGATGATGGATGTAGCACTACAGGGATCGTCCTTCACGAACTTGGACA
CGCTTTGGGACTCCATCATGAGCAAAGTCGACCAGATAGGGATTCCTATG
TCAGGATAtacaatgaaaacattaaagaAGGGACAGAATTGAATTTCAAG
AAATATTCATTCTCTGAAGTTAACGCAGTCGgaaCGCCCTATGATTATGG
ATCAATCATGCACTATAATCTTTattcattttccaaaaataaacgCAAGA
CGTTAGATGCTATTCGTCCGGTACCGAGTGGAACCGACATCGGCCAACGt
aaatatttgagtaaatatGATATCCAAGCTGTCAAGAACTATTATGGCTG
CTAAATGCTTCGTTATGGGTTATTAATTTGCCTGCTGGCTAGCACATCTT
TTGGGAAGCCAGCtgatagttttgaaaaaacttcaatTGAAATCAACAAT
ggtgaaaatattgaaaaatatgaatTGGAAGAAAttcGTGGACCTGAATC
GTCGCCAATCCCATCCTATTTTTTCCAAGGGGATATGTTGATGCGTAAAG
gTACGCTCGCTAAAGCGTTAGAAGGAAAAGATGTGACAAAGGAGGACAAC
AGAGCATGCGCGAATCCACCATGTGCAGCCGCTGCTGGTTTTATCGCAAG
TAGTTTGGCGAAATGGCCCAATCCTCGACGAATCCCTTACGTCATGAGTA
AGAGCGCAAAGTGTAGCGTTTTCGGTCGTATCAGTCATTTCTTTAAATCC
TTATTCGACAAATCGAAGAAATGTCATGAAACAGCCATTCGAGATGGCAT
CAAGGAATGggaaagaaaaacgtgtattcgtTTTGTGGAGATTGATTCTG
ACGATGCTTCTAAGGAGGATGGTTATATTGAATTCACCAGTGGCAAGAAA
CGACAATGTTACGCACACGTAGGCTTTATCGGTGGTCGTCAGGTGGTCAA
TATCGATGATGGATGTAGCACTACAGGGATCGTCCTTCACGAACTTGGAC
ACGCTTTGGGACTCCATCATGAGCAAAGTCGACCAGATAGGGATTCCTAT
GTCAGGATAtacaatgaaaacattaaagaAGGGACAGAATTGAATTTCAA
GAAATATTCATTCTCTGAAGTTAACGCAGTCGgaaCGCCCTATGATTATG
GATCAATCATGCACTATAATCTTTattcattttccaaaaataaacgCAAG
ACGTTAGATGCTATTCGTCCGGTACCGAGTGGAACCGACATCGGCCAACG
taaatatttgagtaaatatGATATCCAAGCTGTCAAGAACTATTATGGCT
GCTAAATGCTTCGTTATGGGTTATTAATTTGCCTGCTGGCTAGCACATCT
TTTGGGAAGCCAGCtgatagttttgaaaaaacttcaatTGAAATCAACAA
TggtgaaaatattgaaaaatatgaatTGGAAGAAAttcGTGGACCTGAAT
CGTCGCCAATCCCATCCTATTTTTTCCAAGGGGATATGTTGATGCGTAAA
GgTACGCTCGCTAAAGCGTTAGAAGGAAAAGATGTGACAAAGGAGGACAA
CAGAGCATGCGCGAATCCACCATGTGCAGCCGCTGCTGGTTTTATCGCAA
GTAGTTTGGCGAAATGGCCCAATCCTCGACGAATCCCTTACGTCATGAGT
AAGAGCGCAAAGTGTAGCGTTTTCGGTCGTATCAGTCATTTCTTTAAATC
CTTATTCGACAAATCGAAGAAATGTCATGAAACAGCCATTCGAGATGGCA
TCAAGGAATGggaaagaaaaacgtgtattcgtTTTGTGGAGATTGATTCT
GACGATGCTTCTAAGGAGGATGGTTATATTGAATTCACCAGTGGCAAGAA
ACGACAATGTTACGCACACGTAGGCTTTATCGGTGGTCGTCAGGTGGTCA
ATATCGATGATGGATGTAGCACTACAGGGATCGTCCTTCACGAACTTGGA
CACGCTTTGGGACTCCATCATGAGCAAAGTCGACCAGATAGGGATTCCTA
TGTCAGGATAtacaatgaaaacattaaagaAGGGACAGAATTGAATTTCA
AGAAATATTCATTCTCTGAAGTTAACGCAGTCGgaaCGCCCTATGATTAT
GGATCAATCATGCACTATAATCTTTattcattttccaaaaataaacgCAA
GACGTTAGATGCTATTCGTCCGGTACCGAGTGGAACCGACATCGGCCAAC
GtaaatatttgagtaaatatGATATCCAAGCTGTCAAGAACTATTATGGC
TGCTAAATGCTTCGTTATGGGTTATTAATTTGCCTGCTGGCTAGCACATC
TTTTGGGAAGCCAGCtgatagttttgaaaaaacttcaatTGAAATCAACA
ATggtgaaaatattgaaaaatatgaatTGGAAGAAAttcGTGGACCTGAA
TCGTCGCCAATCCCATCCTATTTTTTCCAAGGGGATATGTTGATGCGTAA
AGgTACGCTCGCTAAAGCGTTAGAAGGAAAAGATGTGACAAAGGAGGACA
ACAGAGCATGCGCGAATCCACCATGTGCAGCCGCTGCTGGTTTTATCGCA
AGTAGTTTGGCGAAATGGCCCAATCCTCGACGAATCCCTTACGTCATGAG
TAAGAGCGCAAAGTGTAGCGTTTTCGGTCGTATCAGTCATTTCTTTAAAT
CCTTATTCGACAAATCGAAGAAATGTCATGAAACAGCCATTCGAGATGGC
ATCAAGGAATGggaaagaaaaacgtgtattcgtTTTGTGGAGATTGATTC
TGACGATGCTTCTAAGGAGGATGGTTATATTGAATTCACCAGTGGCAAGA
AACGACAATGTTACGCACACGTAGGCTTTATCGGTGGTCGTCAGGTGGTC
AATATCGATGATGGATGTAGCACTACAGGGATCGTCCTTCACGAACTTGG
ACACGCTTTGGGACTCCATCATGAGCAAAGTCGACCAGATAGGGATTCCT
ATGTCAGGATAtacaatgaaaacattaaagaAGGGACAGAATTGAATTTC
AAGAAATATTCATTCTCTGAAGTTAACGCAGTCGgaaCGCCCTATGATTA
TGGATCAATCATGCACTATAATCTTTattcattttccaaaaataaacgCA
AGACGTTAGATGCTATTCGTCCGGTACCGAGTGGAACCGACATCGGCCAA
CGtaaatatttgagtaaatatGATATCCAAGCTGTCAAGAACTATTATGG
CTGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008533XLOC_008533Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015258-proteinTCONS_00015258-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015258-exon-sc0000208-1491911889:103425..103747TCONS_00015258-exon-sc0000208-1491911889:103425..103747Clytia hemisphaericaexon
TCONS_00015258-exon-sc0000208-1510915933:103425..103747TCONS_00015258-exon-sc0000208-1510915933:103425..103747Clytia hemisphaericaexon
TCONS_00015258-exon-sc0000208-1575043694:103425..103747TCONS_00015258-exon-sc0000208-1575043694:103425..103747Clytia hemisphaericaexon
TCONS_00015258-exon-sc0000208-1491911889:104164..104229TCONS_00015258-exon-sc0000208-1491911889:104164..104229Clytia hemisphaericaexon
TCONS_00015258-exon-sc0000208-1510915933:104164..104229TCONS_00015258-exon-sc0000208-1510915933:104164..104229Clytia hemisphaericaexon
TCONS_00015258-exon-sc0000208-1575043694:104164..104229TCONS_00015258-exon-sc0000208-1575043694:104164..104229Clytia hemisphaericaexon
TCONS_00015258-exon-sc0000208-1491911889:104713..104871TCONS_00015258-exon-sc0000208-1491911889:104713..104871Clytia hemisphaericaexon
TCONS_00015258-exon-sc0000208-1510915933:104713..104871TCONS_00015258-exon-sc0000208-1510915933:104713..104871Clytia hemisphaericaexon
TCONS_00015258-exon-sc0000208-1575043694:104713..104871TCONS_00015258-exon-sc0000208-1575043694:104713..104871Clytia hemisphaericaexon
TCONS_00015258-exon-sc0000208-1491911889:106115..106310TCONS_00015258-exon-sc0000208-1491911889:106115..106310Clytia hemisphaericaexon
TCONS_00015258-exon-sc0000208-1510915933:106115..106310TCONS_00015258-exon-sc0000208-1510915933:106115..106310Clytia hemisphaericaexon
TCONS_00015258-exon-sc0000208-1575043694:106115..106310TCONS_00015258-exon-sc0000208-1575043694:106115..106310Clytia hemisphaericaexon
TCONS_00015258-exon-sc0000208-1491911889:106884..107059TCONS_00015258-exon-sc0000208-1491911889:106884..107059Clytia hemisphaericaexon
TCONS_00015258-exon-sc0000208-1510915933:106884..107059TCONS_00015258-exon-sc0000208-1510915933:106884..107059Clytia hemisphaericaexon
TCONS_00015258-exon-sc0000208-1575043694:106884..107059TCONS_00015258-exon-sc0000208-1575043694:106884..107059Clytia hemisphaericaexon
TCONS_00015258-exon-sc0000208-1491911889:107357..107407TCONS_00015258-exon-sc0000208-1491911889:107357..107407Clytia hemisphaericaexon
TCONS_00015258-exon-sc0000208-1510915933:107357..107407TCONS_00015258-exon-sc0000208-1510915933:107357..107407Clytia hemisphaericaexon
TCONS_00015258-exon-sc0000208-1575043694:107357..107407TCONS_00015258-exon-sc0000208-1575043694:107357..107407Clytia hemisphaericaexon
TCONS_00015258-exon-sc0000208-1491911889:108291..108621TCONS_00015258-exon-sc0000208-1491911889:108291..108621Clytia hemisphaericaexon
TCONS_00015258-exon-sc0000208-1510915933:108291..108621TCONS_00015258-exon-sc0000208-1510915933:108291..108621Clytia hemisphaericaexon
TCONS_00015258-exon-sc0000208-1575043694:108291..108621TCONS_00015258-exon-sc0000208-1575043694:108291..108621Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000208supercontigsc0000208:103425..108621 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.17968	6.4888	3.96919	3.73941	1.09432	1.55655	118.266	126.112	164.116	144.162	231.579	124.474	43.909	43.5374	20.0901	14.6369	96.6147	86.5643	114.556	200.645	280.692	276.548	245.52	265.406	167.105	192.183	87.1463	93.3849	1596.79	1495.91
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001506Peptidase_M12A
IPR006026Peptidase_Metallo
IPR024079MetalloPept_cat_dom
IPR034035Astacin-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004222metalloendopeptidase activity
GO:0008237metallopeptidase activity
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0008237 metallopeptidase activity
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00015258 vs. Swiss-Prot (Human)
Match: TLL1 (Tolloid-like protein 1 OS=Homo sapiens GN=TLL1 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.186e-23
Identity = 83/216 (38.43%), Postives = 115/216 (53.24%), Query Frame = 2 
Query:  518 RIP-YVMSKSAKCSVFGRISHFFKSLFDKSKKCHETAIRDGIKEWERKTCIRFVEIDSDDASKEDGYIEFTSGKKRQCYAHVGFIG-GRQVVNIDDGCSTTGIVXXXXXXXXXXXXXQSRPDRDSYVRIYNENIKEGTELNFKKYSFSEVNAVGTPYDYGSIMHYNLYSFSKNKRKTLDAIRPVPSGTD------IGQRKYLSKYDIQAVKNYYGC 1141
            R+P    S++ +    G I +     F  S++      +  ++ WE+ TC+ F+E      S E+ YI FT  +   C ++VG  G G Q ++I   C   GIV+HELGH +G  HE +RPDRD++V I  ENI+ G E NF K    EVN++G  YD+ SIMHY   +FS+     LD I  +PS  D      IGQR  LSK DI   +  Y C
Sbjct:  144 RVPRAATSRTERIWPGGVIPYVIGGNFTGSQR---AMFKQAMRHWEKHTCVTFIE-----RSDEESYIVFTY-RPCGCCSYVGRRGNGPQAISIGKNCDKFGIVVHELGHVIGFWHEHTRPDRDNHVTIIRENIQPGQEYNFLKMEPGEVNSLGERYDFDSIMHYARNTFSRG--MFLDTI--LPSRDDNGIRPAIGQRTRLSKGDIAQARKLYRC 346
The following BLAST results are available for this feature:
BLAST of TCONS_00015258 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TLL18.186e-2338.43Tolloid-like protein 1 OS=Homo sapiens GN=TLL1 PE=... [more]
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