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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014943 ID=TCONS_00014943|Name=TCONS_00014943|organism=Clytia hemisphaerica|type=transcript|length=3234bpRun BLAST on NCBI protein sequence of TCONS_00014943-protein >TCONS_00014943-protein ID=TCONS_00014943-protein|Name=TCONS_00014943-protein|organism=Clytia hemisphaerica|type=polypeptide|length=889bp MFLKLESARKNEKDEENIPLTSNRSTIHSGREQFPPPAGRNLYTPPLIVKRun BLAST on NCBI transcript from alignment at sc0000201:371092..381394+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014943 ID=TCONS_00014943|Name=TCONS_00014943|organism=Clytia hemisphaerica|type=transcript|length=10303bp|location=Sequence derived from alignment at sc0000201:371092..381394+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000201:371092..381394+ >TCONS_00014943 ID=TCONS_00014943|Name=TCONS_00014943|organism=Clytia hemisphaerica|type=CDS|length=26700bp|location=Sequence derived from alignment at sc0000201:371092..381394+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00014943 vs. Swiss-Prot (Human)
Match: ANK2 (Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4) HSP 1 Score: 92.8189 bits (229), Expect = 9.602e-19 Identity = 65/215 (30.23%), Postives = 109/215 (50.70%), Query Frame = 2
Query: 812 LKMVDRLIRNGANLNVTDKYGQTVMHEVAKNWHTDVAKYLIKRGAIYDAKDRYGRTPLHLASAVGHVEMIDFLVGQDHEKLKDVTKDERQTALHYAAKNNSVGALKVLLKLGASMNDRDYRLRTALHLAAENGRIEAARYLLSKNAPCAVYDDQGVSCLSIMV----QKMPGVAFLALQQFYAEDPANRKLYCYLNYLEKKLLADEELQISWKYL 1444
L +V L++NGA+ +VT+ G+T +H A+ +V + L++ GA+ DA+ R +TPLH+AS +G E++ L+ H D T LH +A+ V VLL+ GA+ + + T LH+AA+ G ++ A+ LL + A G++ L + QK VA L L++ + + Y L+ KK ++QI+ L
Sbjct: 444 LNIVLLLLQNGASPDVTNIRGETALHMAARAGQVEVVRCLLRNGALVDARAREEQTPLHIASRLGKTEIVQLLL--QHMAHPDAATTNGYTPLHISAREGQVDVASVLLEAGAAHSLATKKGFTPLHVAAKYGSLDVAKLLLQRRAAADSAGKNGLTPLHVAAHYDNQK---VALLLLEKGASPHATAKNGYTPLHIAAKK----NQMQIASTLL 649 The following BLAST results are available for this feature:
BLAST of TCONS_00014943 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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