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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014941 ID=TCONS_00014941|Name=TCONS_00014941|organism=Clytia hemisphaerica|type=transcript|length=3710bpRun BLAST on NCBI protein sequence of TCONS_00014941-protein >TCONS_00014941-protein ID=TCONS_00014941-protein|Name=TCONS_00014941-protein|organism=Clytia hemisphaerica|type=polypeptide|length=389bp FLDNAYYQNKTEIKKLTIKMIEGENKVLQAFLGTLLTWGLTAAGSAMVFIRun BLAST on NCBI transcript from alignment at sc0000201:355556..365272+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014941 ID=TCONS_00014941|Name=TCONS_00014941|organism=Clytia hemisphaerica|type=transcript|length=9717bp|location=Sequence derived from alignment at sc0000201:355556..365272+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000201:355556..365272+ >TCONS_00014941 ID=TCONS_00014941|Name=TCONS_00014941|organism=Clytia hemisphaerica|type=CDS|length=10530bp|location=Sequence derived from alignment at sc0000201:355556..365272+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00014941 vs. Swiss-Prot (Human)
Match: PM34 (Peroxisomal membrane protein PMP34 OS=Homo sapiens GN=SLC25A17 PE=1 SV=1) HSP 1 Score: 281.567 bits (719), Expect = 2.606e-85 Identity = 150/314 (47.77%), Postives = 200/314 (63.69%), Query Frame = 2
Query: 2012 LEDLLSYSNLVHAIAGATGSVVGMSTFYPLDIVRTRFQADEKLKAVGPLQAMKKLADEEGVEALYRGLGPVLTSLYCSNFVYFYSFNGMKMIANSNGLKASVGRDLVLGYVAGCINAMMTTPLWVTNTRLKLQGVLKDEAGEQPEKKFNGLIDGMRKIAKEEGVHALWNGVEASFILSGNPAIHFMVYEALKRVVLKARGARGKTATLSSFESFVIGGFAKAVATVITYPLQLIQCRLRAKRRSKDGS----GSMSSV---LEEVLRTSGFNGLYKGMESKLYQTVLTASLMFLSYEKIMALIYTVF---KVHQ 2923
+ +LSY +LVHA+AGA GSV M+ F+PLD R R Q DEK K+ + ++ EEG+ A YRG PV++SL CSNFVYFY+FN +K + G ++ G+DLV+G+VAG +N ++TTPLWV NTRLKLQG K + + G+ID +I ++EG+ ALWNG S +L NPAI FM YE LKR +LK R LSS + F+IG AKA+AT +TYPLQ +Q LR R + GS+ ++ L + +R G GLYKG+E+KL QTVLTA+LMFL YEK+ A +TV + HQ
Sbjct: 1 MASVLSYESLVHAVAGAVGSVTAMTVFFPLDTARLRLQVDEKRKSKTTHMVLLEIIKEEGLLAPYRGWFPVISSLCCSNFVYFYTFNSLKALW-VKGQHSTTGKDLVVGFVAGVVNVLLTTPLWVVNTRLKLQGA-KFRNEDIVPTNYKGIIDAFHQIIRDEGISALWNGTFPSLLLVFNPAIQFMFYEGLKRQLLKKR------MKLSSLDVFIIGAVAKAIATTVTYPLQTVQSILRFGRHRLNPENRTLGSLRNILYLLHQRVRRFGIMGLYKGLEAKLLQTVLTAALMFLVYEKLTAATFTVMGLKRAHQ 306 The following BLAST results are available for this feature:
BLAST of TCONS_00014941 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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