XLOC_008356 (gene) - C. hemisphaerica

Overview
NameXLOC_008356
Unique NameXLOC_008356
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000201:355556..365272+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_008356 ID=XLOC_008356|Name=XLOC_008356|organism=Clytia hemisphaerica|type=gene|length=9717bp|location=Sequence derived from alignment at sc0000201:355556..365272+ (Clytia hemisphaerica)
tttttagataATGCGTACTACCAAAATAAAAcggaaataaaaaaactaac
taTCAAAATGATTGAGGGTGAAAACAAAGTGTTACAAGCCTTCTTGGGGA
CACTTTTGACATGGGGACTGACAGCTGCTGGTTCAGCCATGGTCTTTATC
TTTGGACATCGTCGCTTTAATGGAAAAGTATaacaatttttctcatcttg
tACCTGTGTCGCGTTCAATTTAATTACGAAAAAAGATTCTTGTCCTTCCA
TAACCGGTGAGGAAAGAATAACTTTTCTTATTCATAATCCTTTCTTATCA
ATTTTTAGAGAAAGATTTTGGACACAAGTTTGGGATTCGCTGCTGGTGTA
AGTATATGTTTTCATATTATACATATAATTTGCTTTTCATATATATTCTC
AAgagtattttcaagaattttgatctttataaatatctttaatTAATTGG
TGGTTGAGCTGTATCAATTAACATCATGTCCCTACCTTATCGCCACTATT
ACATTAACTTGAATGttaaattcttctttttatccTCTTATTCTAAAGCA
CAAAGATCAAAAGATAAACTTAATTTCCTTAGGTGATGACGGCAGCTTCA
TATTGGTCATTGTTAGCACCCGCTATCGACATGGCTGAAAAATCTGGTAC
CTATGGTGAAAAGGGTGCATTTGCTCCTGTGGCTGTTGGCTTCTTTCTTG
gtggtgtttttgtttttatatctgATATTTGTATTCCCAAATTTGTAAGT
TTGTTCAtttaactaactaactaactaattTAACTATCTAACTAActgtt
cattaaaaaaaatgtttttcttgttgattttaagactttttagATATAAC
TCTTTTCCCGGTcgctaattttttcaaatagtcTTGTCGTCTTTTAACCT
TTTTCGAAACAACCTCCAGGAGAGGAAACTGCCATGGTATCTCTAATTCA
GCTTTCACTTCTTTCTAAAAGGCCACAGAAGACCCATCAGTAGCTCTTGC
GATGTATAATCAACGTAAAAAGTATGAAGATAAAAATAGTGATAATAATC
CTACACTGGCATCTATCGTCAGTGAAGAGCCTTCTCGAGAAATAGATCAA
CAGTCGCCAGCAACCAGTGACCCTGAGCTGATTACATCCGTTGAGAATGG
GGATAAAGTCTCACTGACGGACTCTATACAATTGAAAATTCGAAACCGTA
AGAATGCACCCGACAAACCAGAAATGGTGCTTGAATATCAAATTGAATCC
CGAGAAGAAAAGAAAGCAATAGAAGCTGCAGAGAGAAAAGCTCGATATGA
AAGTTGGAAAAGAATGTTGTTATTAATCATTGCAATTACTGTTCATAATA
TTCCAGGTACTGCTAATTATCATGTCTTACCCTCTTTAGCACTTCATCTT
CGTTCAATAATTCTTTTCCGCGCAGGATCTTTCTTAAACAGCACACAAAT
TAACCATAAGTTTCAAGGTTCACAGCGAAAATACCTTAACTTTAGCCTGG
TGATTGCTAAAGATATGACATCATTGACTTTGACACTGGCTCCATGACTA
TTAATGATTATTACGGTTGTTTATCTTAGAGGGTTTGGCAGTGGGAGTTG
CATTTGGTGCCATTGGATCATCTAGCTCAGCAACCTTTTCATCTGCCAGG
TATGTTCAGCCAGCTTTGGCATTTTACCGTATCTTTTCTAAAAGTCCTAA
ATTGTTAAGTCTACAAATGGCCATTTTATATGTTAAAGTCAAGTGAgcca
ttaaaaaatgttttaatttgaatttttgtataATGATGAATCTTCTGCTT
ATCTTCGATTTCCATTGTCTGTTTCATATAtaagtttgttttcatttaag
gAGTCTGGCTATCGGTATTGGAGTACAAAACTTCCCTGAGGGAATGGCAG
TCAGTGTTCCTTTATGTGCAGCTGGTTATTCGCCTTTGAAAAGCTTCTGG
TGAGCGACCTTCCATTATGATCTATGAGTTGTGACTTTGACATTCGCACA
AAAATGTTGAAGTgaaatgtttcaaaatatttccttttctCTTTTCAGGT
ATGGTCAACTTAGTGGAATGGTGGAACCCATCTTCGGTGTTCTAGGTTCT
TTAGTTGTGGTGGTAAGAAAGTATTTAATTCATTCCGTGCTAGTTCATCG
CAAAAACGTTTTATAATTTGTTTTATGACAAGAATCGATTATTTCAGTAC
TCGTTTTTATTTAATTGGTGTTTATTACTTTTTATAACTGCTAGAGGTAC
CATAAAATGTTGTTTCATTATGCAGGTAGCAGAGCCGATTCTTCCATACG
CTCTAGCGTTTGCGGCAGGAGCAATGATATATGTGGTGGTAGATGACATC
ATCCCTGAAGCTAACATGTGGTAAGACACCATTTCCCAGTTTTATTTTCT
TGtacttttgtttatctaatcccaGCATCTTCCTTCACTGGACTTCCTCT
CTCTTGTTGTGAGCTCTTAAAAAGTTATTTGTCCCATCATATGTATGTCA
AATCGATACTAACCCTATTATCTCATTTTCATGACGTCGAAAATTTCTTG
TCATTTACGAAACTTAACAGAACGCTTGAAATTGATCATTATGACCTCAT
TTCATACTTCATCATTTATAGATGATTTAATTTTTGTTCCTCATAGTGGT
AATGGTCGCTATGCATCCTGGGGCACAATGCTTGGATTCATCGTCATGAT
GTCACTTGATGTTGCTCTTGGTTAATCAATTGTTCctgttttcattttat
attatagattttgttcaaattgatttttctcTACAtgaaaaaacagcctt
tttaggaGAATATAGTACTacaaaaagtgccctttttggctctTCCATCG
GACACTATCCTGCCTTTTTCAAATTATGGCCTTTTATCAAGGCtttgaaa
actgatttttaagtCAAAACTTCTGACCCGCTGATTGATACCCTTGAAGA
CGTATTCTATAtatttttgttatgattttgGGTGTATCTTTAGGTTTTAG
TTCTGTTTGATCTCTTTAGGCATATAAATTAGTACTGATATTAGTCAGAA
AATATTATAATTtcctattttattttttactttcttaATTAATATATTGT
ATTCTACAGTAgctattttgaatttcaatttttcacaactCTTTAGAAGT
TCTCTAGGTTCAATGAGAGTTAGATTTACAGAATTATATTATCATAATAT
TTTCATGTATTTAGGATATTGGTGCGGAGTGTTAGTGATGGTGTGcaatt
tttatagttttttagCTTGAGAAAGCGATTTACGATAATATTTATATTAT
GCATGTCAAAAAGGAACTTTGCatgttcaaattttattttttgttcacag
TTTCCCATTCACGATAAAATGACCATTGTATACGCAACCTAGTGTCCTAG
TAGACCTTCGTTTTGATCACGTCAACTTAACGGCTGTAACGTCTTTGTAA
ACACTGAGAGACTTTATTGACATTCTGTTATTCTTCCAGGTGAAAAAAAC
CTTATACTTCAGTACTAAATAAAAGACAACACAATGTCCTCCTCAGCGTC
AGGACAGAATGGACTTCTTGAAGACTTGCTTTCCTACAGCAATTTGGTGC
ATGCCATTGCTGGAGCCACAGGAAGTGTTGTCGGAATGTCCACATTCTAT
CCACTGGATATCGTCAGAACTAGATTCCAAGGTATGTTCATCGATGAATG
ATTATCTAgaatatgcaccactgcaacgaCTTGAATTGTGTAATATCATA
TCATGCAACTTTTTAGATTTAGGTGACCCTTTTCCAGTGTGATACTGACG
AATTGGATAAAAAATTTGATTCTGAAAGACTTTGAAGACTTTTTACATGC
TGATTCGTGATCATTTTCTAGAAGTATTGATTTCCTGATATGATAGTCTG
TAAAGAATGTTTAATGTGCACGAGGACAGTTTATGATGGAAAAAAGAAAC
TGGTGCTCCGAAGGAATTCTTGGTTAGAATCGTTCGGCCCAACAACTTAA
GCATATGATGGtaatgaatttcttttctttccacTTATTCAGCGGATGAG
AAATTGAAAGCAGTGGGTCCACTTCAAGCTATGAAGAAATTGGCTGATGA
AGAAGGGGtgtaagaaaaaatctttttagacctaccccggtggggtggag
gtcctataaattcacctctgtccgttcgtccgtccgccCGTcctcgttac
cagcttttctcgagattgaatcataggaatcatttgatttttggtacaaa
tgtgcaaaacggtggtggccaaaatgtgacggagcccgattttcgaaaca
aaaaattttgggcaaatttgggctttgtgaaaaattggatcattaaattt
ttttgattttttgcatgaaggtaaaaatcataggtaaaagatggctctag
cagatttttgcaaaaaaatttatttggcttaaaaaacgcatgtttatcta
taagaatcactattaataagcatacattcatgttcttagtcaaattactc
aatttttttatgagatagatgttttttttctcatgaGGGCTTACCTTTGA
AGCAATTATGTGTTTAGACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNtaagaaacaaacgactaattttaat
aaatcgtcactatttgtgttctgaatgattgtttaacgttcatgctcacg
tagatatcaattatatatgtgttaaacgCATAACCaagtaggtccataaa
agtatcacttgttatttttttttttaatatttcaagAATACTTAAGTTAA
AGGAGACAGGTCTATCAATCCCATAGTACTGGAGTTTGTAGCTTTTGGAG
TCACCTTTAGAACCTAAGTGTGATATCATATGTCCTAACTCGGAACTAAA
AGATGACACATACTCTCTTAGTTAGATCTTGTTGCAACTTTCAACCAAAA
AATCATTTCCACCCCTAATTATctgcaagtgaaaaaaaaaaaggatttca
cCTGAACTAAattctccaattttttttcgaatgcGAAATTTTTATTCTGC
TATCTGAATTATTTCCAAGCCTCTTTTTTAGAATAATTCATTTCTTTTTC
TCAGGGAAGCGTTGTATAGAGGACTGGGTCCCGTGTTGACCAGTTTGTAT
TGCTCCAACTTTGTTTACTTCTATTCGTTCAATGGCATGAAAATGATTGC
CAACTCGAACGGGCTGAAAGCATCTGTTGGAAGGGATTTGGTGCTAGGCT
ACGTAGCAGGTTCGTAGAAAATTCGGCTATAACGATTCCAAATTAAGTTT
CGAGGGTCGTATAATAATTGCAAGCGGTTACTTTTACAGAAGAATCCGTT
TTCAACAGAAATAACAGAAAACagaaagaatatttaaattttaaatagtC
TATTACGAAATGGAATGTCAGACTCAAATGGTGTGGGCCTTTTTCTGTAT
GTAAAATGTGATTCCCTTACGCTATAACTCATGTTTGCTTGGATCCTTAA
CTTTGAGATAACTCTGACCCTTTCTTGGCTAGGTTGTATCAATGCTATGA
TGACCACTCCATTGTGGGTGACAAACACACGATTGAAGTTGCAAGGCGTA
TTAAAAGACGAAGCAGGAGAACAACCTGAGAAAAAATTCAACGGATTGAT
CGGTAATTCTAGATATTACCTTCTTATCTTTGTTGGGCGTCTTATCAGAT
TACCtcattacacaaatattactaggcaagtattcgacggccttgaaatt
tgcacgatctgaaattaacacgaatttttctgctttttcaaggaaacagc
ggctggttttgattaagagggtttttattggcatgaaatatttcaattcg
tgtttataaaatgactagtaatattcgtgtaataggGTACAATTATATGA
AAGATGGATTTTAGTTTCTTTTTGCACATCATATTTACCAGTGTGGTCTA
attattaacatatttttttatttttctacagATGGTATGAGAAAGATAGC
AAAAGAGGAGGGCGTACACGCCTTGTGGAATGGCGTTGAGGCGTCATTTA
TTTTGTCAGGAAACCCGGCCATTCATTTTATGGTTTACGAAGCTTTGAAA
AGAGTTGTGTTGAAAGCTAGAGGAGCACGAGGCAAAACAGCTGTAAGTTC
TTCTCTGTAAATTTCTATCTCCTTAGCAACTatttgcgaaagtttcttcA
AAGATGTCCCACATTAGATATAATTGCGGTGGTCGGTTTTACATCTCACA
TTATCTTGTACAGGGATACTTGCcaactttcattctatttcaaTCTTcct
tattttttctttatttgaaaaGATGACAAGTGCATTACCAATTATATACT
ACATAACACTACTAACATAGATATAATAGtcccttattacacgaatatta
ctagtcatttaacacgaattgaaaaactCAGTGTtgataaaaaccccctt
aattaaaaccagcctgGTGATGTCCTTGAACAAGCagataaaattcgtgt
taattttttgcgtgttaatttcaaggtcGTTGAATACttttgcctagtaa
tattcgtgtaataaggtaaagTGGTATctccagaggtactagactatgtt
aaaagaaacaaaaataatactGGAAAAAATAATGTAGGGAGCTATGGTTG
TTGAGTCAAGACTAGAACAAAGCTTTCCTTTTTTTCACAGACGTTATCAT
CGTTCGAATCATTCGTTATTGGTGGGTTTGCGAAAGCAGTGGCTACCGTC
ATCACTTACCCCTTACAATTGATTCAATGTCGTTTGAGGGTAAGTTTCTC
TTCGTCTATCATTTTGGAAAACTCGACCTGTCTGCTAATTAGTCAAGGGA
AAATGGCCTGAAAACCCACCTTGGACGGAACTTTGTACATTAGGGAATGA
AGCCCAAAATTCGGTAAAATATGAAAGGTGAAAATGGGATGGTTCGAGAT
GATTTAATTTAATTATTCAGTAAAACCCAGACGTTGAATCGGCAGAAAAT
TCTGTACATACAACTCTTTCATTCGGATGTCGTATTTTACTTTTGTAGGC
TAAAAGGAGAAGTAAGGACGGGTCTGGATCAATGTCAAGTGTATTGGAAG
AGGTTTTAAGgtaagtcttttttatattctgCATTTTTAATAAAGAAATG
TATGCAATCTGTATCATTGTCAATATTTTCCGAGAATCTGACAAACTCGA
GCTCCCATCGTGACACGTCGAATTCTGGGATGttattcattattttgaat
ttttggacctaccccggtggaggtcctataaattaatgtgtgtttgttcg
ttcgtccgttcgtccgtccgtccgttcgttcgtctgttaccaacttttct
caggattgaatcatagtaattttttgatttttggtacaaaggtgcaaaat
ggtggtggccaaaatgtgacggagcccgattttcgaaaaagaaatttttt
ggccaaatttgggccaaaaaacggcaaaaaaatgggttttttggacttcg
tgaaatattggataattatttttttctgattttttgcatgaaagtatgta
aaagatggctcaagcagattttggtaaaaaaaagattttttcggctcgaa
aaacgcatctttatctataagaatcactattaataagcatacatcaatgt
tcttagccgaaTTACTAGAGATAGATGTTGTTTTTTTGCTCACGAAGTCT
TGAATATGaaagaatatttcaagagcatgaaattttggtttctaaacgtt
tttttataagaaacaaacgactaatttaaatagatcgtcactatttgtgt
tctgattgtttaatggtcacgtcacgtagatatcaattataaatgtgtta
aatgcataaccaggtaggtccacaaaagtatcacttgttttgtcttcttt
ttttgctgCAGGACATCTGGGTTCAACGGCTTATACAAAGGTATGGAATC
GAAATTATACCAAACTGTCCTCACTGCATCTCTCATGTTTTTGTCATACG
AAAAAATTATGGCTTTGATTTATACTGTCTTCAAAGTTCACCAAAAATCA
AAGAAGCCTTGATACCTCTTGGACCACCATAGAGACGGATTGGAAATATG
GATTTAGAACACGTGCGGGAAAATGATTTCAGGGCCGCACAACATTTACA
TACATTGAACATTAGcaggtatcaaatttttggatttcTACCCATGCATT
ACATTAGATAACATGATTCAAATTATACCATGATTCAAATTAATTTACTT
TGATTTATTGCCGATTGAGGTATTTGACTGGACTATCAGACAATATACCT
GTATAAATCTGAAAAGAAACTATTCAAATCAAACTCAGACTGCACATGGG
ACTGCTTGAAAAATGGATCTTCCAAATAGACTCgataatttagaaatttt
tatataaaaaattacaatttacCAAACgagattatattttttgttttgtt
ttagaattttatttatcgattaaaatgaggaattcttggaaataatactt
tttgaacaaaataacaaattaaAGTGTGTTCTTATTCTCATTATATTACG
ATCAACTTTCTTTCACAACATTTTTTAAAAGCACAACTAAAACCTGAAAG
AAATCATATTATCTGCCTGGCTCTAGCACTATTCATATTCTCAGAATGTT
ATAATCACAACTTTTTAAGTCCAATTTGAATTCAGAACGATATTATTCTC
TGGTGGTGACACTTTCCCAATTTTCCAACACAGTGAGTGTGTTGGCAAAC
ATTTGAAACATTATTCTATTCACTTCTAACGGTCTTCATTAGCAGCATCA
TTTTTCGGCAGATATGGAGTCCAGCTCGTCTTGTAATTCAACTATTGATT
GTTTGTGTTGTTGGCGCCAAAACTTCTCAAACAAATGGACCTAAGTGAAT
AAAATAAACGAATAAACTTCATATTCATCACGGAGAAGAGACCGAAGACC
TTTGGGTATTTGTGAAGCTTCTATTATACTGTGTATCGGTGTCAGCTGTT
TACTAAATACCGCAGGTAGCGTGCTTCGTGTCGCTACGAACTGAAATGAA
GTTATTCTATTGGTCAGCTATTGGCTAGAAATGACGTAAGAATTTCGTTA
CGGAGCGGGACCGTAGC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00014941TCONS_00014941Clytia hemisphaericatranscript
TCONS_00014942TCONS_00014942Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00014941-proteinTCONS_00014941-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000201supercontigsc0000201:355556..365272 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
SLC39A11PREDICTED: zinc transporter ZIP11 isoform X2 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
37.22	37.21	17.32	12.95	13.75	10.95	21.78	22.92	26.16	26.06	33.18	27.17	56.48	59.68	47.6	56.07	45.68	45.86	28.31	27.71	37.25	37.37	46.73	44.01	34.2	34.05	32.13	30.07	42.8	41.71