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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014582 ID=TCONS_00014582|Name=TCONS_00014582|organism=Clytia hemisphaerica|type=transcript|length=1424bpRun BLAST on NCBI protein sequence of TCONS_00014582-protein >TCONS_00014582-protein ID=TCONS_00014582-protein|Name=TCONS_00014582-protein|organism=Clytia hemisphaerica|type=polypeptide|length=474bp CEDKLESALQNGDRVVLMDVKLNEITDRMKCILQSYQKFTGSNKPFKLLVRun BLAST on NCBI transcript from alignment at sc0000190:403040..409766+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014582 ID=TCONS_00014582|Name=TCONS_00014582|organism=Clytia hemisphaerica|type=transcript|length=6727bp|location=Sequence derived from alignment at sc0000190:403040..409766+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000190:403040..409766+ >TCONS_00014582 ID=TCONS_00014582|Name=TCONS_00014582|organism=Clytia hemisphaerica|type=CDS|length=17064bp|location=Sequence derived from alignment at sc0000190:403040..409766+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00014582 vs. Swiss-Prot (Human)
Match: DYH10 (Dynein heavy chain 10, axonemal OS=Homo sapiens GN=DNAH10 PE=1 SV=4) HSP 1 Score: 94.7449 bits (234), Expect = 2.358e-20 Identity = 90/408 (22.06%), Postives = 174/408 (42.65%), Query Frame = 3
Query: 144 LLVGNKEIDCSPNFRLVLLTSKKCIEIPPSNFYHR--INIPMSRELLDEIFLDFFIS--------------KEKSQLNDALRNVNQEMLSFIXXXXXXXXXXXXXXAERRCFGQISTVRRILNIKKLFDEAYFGKCRAEEVYENIRETRETYLPIARQAAVLFTVAANMTEINEFYQLTIERFMEYFASAIKHSXXXXXXXXXXXXLN-----SLFHVILKSRFEEDRMLFTLMVAIETEDIHQRITIGCREFLIDPRLGAAIKQYQAEVQSNIKINASI-KKPFDWMTDEQYQYLLILSQNFDWFAETFDKMAKDGREMQ--WRQIAEHDTPELVALPDHLDERYTPVQRFLVIKAFRPDRFMQAAQIFIATTLGKNLVTDSVLDLRLITAQNPVTIPILLVFKKDA 1295
+++G+KE+D NFRL L T PS F IN ++ + L++ L ++ +E S+ + L+++ +L + + + V + K E AE+ +I R+ Y P AR+ A+LF V + M +N YQ ++ F+E F ++K S ++ R + S+++ FE ++LF+ + I+ E R+ +F + + NI + S KKP W++D+ ++ +++LS+ F++ F ++ D Q W++ + D+ E +P D TP Q+ L+++ FR DR +A ++ T+G+ V ++ I Q+ PI+ + +
Sbjct: 3509 IILGDKEVDYDSNFRLYLNTKLANPRYSPSVFGKAMVINYTVTLKGLEDQLLSVLVAYERRELEEQREHLIQETSENKNLLKDLEDSLLRELAT------------STGNMLDNVDLVHTLEETKSKATEVSEKLKLAEKTALDIDRLRDGYRPAARRGAILFFVLSEMALVNSMYQYSLIAFLEVFRLSLKKSLPDSILMKRLRNIMDTLTFSIYNHGCTGLFERHKLLFSFNMTIKIEQAEGRVPQEELDFFL---------------KGNISLEKSKRKKPCAWLSDQGWEDIILLSE---MFSDNFGQLPDDVENNQTVWQEWYDLDSLEQFPVPLGYDNNITPFQKLLILRCFRVDRVYRAVTDYVTVTMGEKYVQPPMISFEAIFEQSTPHSPIVFILSPGS 3886 The following BLAST results are available for this feature:
BLAST of TCONS_00014582 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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