|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014443 ID=TCONS_00014443|Name=TCONS_00014443|organism=Clytia hemisphaerica|type=transcript|length=1179bpRun BLAST on NCBI protein sequence of TCONS_00014443-protein >TCONS_00014443-protein ID=TCONS_00014443-protein|Name=TCONS_00014443-protein|organism=Clytia hemisphaerica|type=polypeptide|length=390bp MRRPLHFPSPGEFPVKKMACDCAAKAGKDEYRVVALGNWEECHADKTRPDRun BLAST on NCBI transcript from alignment at sc0000187:363547..367246- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014443 ID=TCONS_00014443|Name=TCONS_00014443|organism=Clytia hemisphaerica|type=transcript|length=3700bp|location=Sequence derived from alignment at sc0000187:363547..367246- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000187:363547..367246- >TCONS_00014443 ID=TCONS_00014443|Name=TCONS_00014443|organism=Clytia hemisphaerica|type=CDS|length=5865bp|location=Sequence derived from alignment at sc0000187:363547..367246- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00014443 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 115.931 bits (289), Expect = 2.333e-27 Identity = 51/112 (45.54%), Postives = 67/112 (59.82%), Query Frame = 2
Query: 278 GNWGDWSNWSGCGVTCGNGVHKRTRKCDNPASEGGGKDCEGEAVNTKPCSIAMKCPIDGKWSEWSEWESCDKCCGGGSQRRDRTCDNPPPGPNGKKCQGERIDSRKCNTNAC 613
G W W++WS C V+CG G +RTR C +P + GG+ CEG V + C+ + CP G WS WS W +C + C GG RR RTCDNPPP G+ C G ++CNT+ C
Sbjct: 4701 GKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCN-SDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMC 4811 HSP 2 Score: 111.694 bits (278), Expect = 4.140e-26 Identity = 50/113 (44.25%), Postives = 64/113 (56.64%), Query Frame = 2
Query: 275 DGNWGDWSNWSGCGVTCGNGVHKRTRKCDNPASEGGGKDCEGEAVNTKPCSIAMKCPIDGKWSEWSEWESCDKCCGGGSQRRDRTCDNPPPGPNGKKCQGERIDSRKCNTNAC 613
DG+W +WS W C +CG G RTR C+NP+ + GG+ CEG AV C+I CP+ G WS W W +C + CG G+Q R R C+NPPP G C G + CN C
Sbjct: 4586 DGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNI-RPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNC 4697 HSP 3 Score: 111.309 bits (277), Expect = 5.511e-26 Identity = 49/112 (43.75%), Postives = 64/112 (57.14%), Query Frame = 2
Query: 278 GNWGDWSNWSGCGVTCGNGVHKRTRKCDNPASEGGGKDCEGEAVNTKPCSIAMKCPIDGKWSEWSEWESCDKCCGGGSQRRDRTCDNPPPGPNGKKCQGERIDSRKCNTNAC 613
G + WS W C VTCG G+ KR+R C+ P GGK C+G + + C CP+DG WSEWS WE C + CG G+Q R RTC+NP G+ C+G ++ CN C
Sbjct: 4530 GGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQ-NKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPC 4640 HSP 4 Score: 106.686 bits (265), Expect = 1.462e-24 Identity = 48/114 (42.11%), Postives = 58/114 (50.88%), Query Frame = 2
Query: 278 GNWGDWSNWSGCGVTCGNGVHKRTRKCDNPASEGGGKDCEGEAVNTKPCSIAMKCPIDGKWSEWSEWESCDKCCGGGSQRRDRTCDNPPPGPNGKKCQGERIDSRKCNTNACRG 619
GNW WS W C TC G +R R CDNP GG+ C G + C+ M CP+DG W W W C CGGG + R R CD+P P G+ C G+ +CN AC G
Sbjct: 4758 GNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDM-CPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACPG 4870 HSP 5 Score: 100.908 bits (250), Expect = 9.929e-23 Identity = 44/112 (39.29%), Postives = 61/112 (54.46%), Query Frame = 2
Query: 278 GNWGDWSNWSGCGVTCGNGVHKRTRKCDNPASEGGGKDCEGEAVNTKPCSIAMKCPIDGKWSEWSEWESCDKCCGGGSQRRDRTCDNPPPGPNGKKCQGERIDSRKCNTNAC 613
G W W W C +CG G R R C+NP GG C+G + C+ CPI GKW+ W+ W +C CGGG+++R R C +P P G+KC+G + S CN++ C
Sbjct: 4644 GAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCN-ERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPC 4754 The following BLAST results are available for this feature:
BLAST of TCONS_00014443 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.