TCONS_00014443-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00014443-protein
Unique NameTCONS_00014443-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length390

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00014443-protein ID=TCONS_00014443-protein|Name=TCONS_00014443-protein|organism=Clytia hemisphaerica|type=polypeptide|length=390bp
MRRPLHFPSPGEFPVKKMACDCAAKAGKDEYRVVALGNWEECHADKTRPD
VKLLGSQTDAKCFNAHFLKCKSGESCMGEPNYIYIYALPAKDGNWGDWSN
WSGCGVTCGNGVHKRTRKCDNPASEGGGKDCEGEAVNTKPCSIAMKCPID
GKWSEWSEWESCDKCCGGGSQRRDRTCDNPPPGPNGKKCQGERIDSRKCN
TNACRGPESCFFKYTQYMPYDKDRSPIFLDNHQIKCPADHVLNYIRLQEN
GQRTGVAYGYRCCKTEPCSNSLKINNPTSNGGGFGKIFNLDRQIVDCKNQ
GLSSLKLDEQMSSRWNYKYDCCKVPNKKLDCYRANTGFMSNIAGNIQSLL
NHEISCKCDDYYITGFKLNQNYNGNRDQIRYDFQCCKIKN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008069XLOC_008069Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00014443TCONS_00014443Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01705TSP1REPEATcoord: 169..180
score: 45.16
coord: 151..164
score: 44.39
coord: 188..199
score: 32.37
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 169..189
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 153..205
e-value: 4.6E-11
score: 52.8
coord: 95..148
e-value: 2.1E-12
score: 57.2
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 149..204
e-value: 1.7E-15
score: 56.5
coord: 91..147
e-value: 2.0E-15
score: 56.3
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 96..147
e-value: 7.5E-12
score: 45.2
coord: 154..204
e-value: 6.9E-10
score: 38.9
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 92..148
score: 12.687
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 150..205
score: 13.377
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 91..143
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 147..204

Blast
[Close]
BLAST of TCONS_00014443-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.281e-32
Identity = 51/112 (45.54%), Postives = 67/112 (59.82%), Query Frame = 0 
Query:   93 GNWGDWSNWSGCGVTCGNGVHKRTRKCDNPASEGGGKDCEGEAVNTKPCSIAMKCPIDGKWSEWSEWESCDKCCGGGSQRRDRTCDNPPPGPNGKKCQGERIDSRKCNTNAC 204
            G W  W++WS C V+CG G  +RTR C +P  + GG+ CEG  V +  C+ +  CP  G WS WS W +C + C GG  RR RTCDNPPP   G+ C G     ++CNT+ C
Sbjct: 4701 GKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCN-SDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMC 4811

HSP 2 Score: 122.865 bits (307), Expect = 3.340e-30
Identity = 50/113 (44.25%), Postives = 64/113 (56.64%), Query Frame = 0 
Query:   92 DGNWGDWSNWSGCGVTCGNGVHKRTRKCDNPASEGGGKDCEGEAVNTKPCSIAMKCPIDGKWSEWSEWESCDKCCGGGSQRRDRTCDNPPPGPNGKKCQGERIDSRKCNTNAC 204
            DG+W +WS W  C  +CG G   RTR C+NP+ + GG+ CEG AV    C+I   CP+ G WS W  W +C + CG G+Q R R C+NPPP   G  C G     + CN   C
Sbjct: 4586 DGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNI-RPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNC 4697

HSP 3 Score: 122.094 bits (305), Expect = 6.478e-30
Identity = 49/112 (43.75%), Postives = 64/112 (57.14%), Query Frame = 0 
Query:   93 GNWGDWSNWSGCGVTCGNGVHKRTRKCDNPASEGGGKDCEGEAVNTKPCSIAMKCPIDGKWSEWSEWESCDKCCGGGSQRRDRTCDNPPPGPNGKKCQGERIDSRKCNTNAC 204
            G +  WS W  C VTCG G+ KR+R C+ P    GGK C+G  +  + C     CP+DG WSEWS WE C + CG G+Q R RTC+NP     G+ C+G  ++   CN   C
Sbjct: 4530 GGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQ-NKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPC 4640

HSP 4 Score: 120.553 bits (301), Expect = 2.435e-29
Identity = 48/114 (42.11%), Postives = 58/114 (50.88%), Query Frame = 0 
Query:   93 GNWGDWSNWSGCGVTCGNGVHKRTRKCDNPASEGGGKDCEGEAVNTKPCSIAMKCPIDGKWSEWSEWESCDKCCGGGSQRRDRTCDNPPPGPNGKKCQGERIDSRKCNTNACRG 206
            GNW  WS W  C  TC  G  +R R CDNP    GG+ C G     + C+  M CP+DG W  W  W  C   CGGG + R R CD+P P   G+ C G+     +CN  AC G
Sbjct: 4758 GNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDM-CPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACPG 4870

HSP 5 Score: 116.316 bits (290), Expect = 5.107e-28
Identity = 59/169 (34.91%), Postives = 80/169 (47.34%), Query Frame = 0 
Query:   39 WEECHADKTRPDVKLLGSQTDAKCFNAHFLKCKSGESCMGEPNYIY---IYALPAKDGNWGDWSNWSGCGVTCGNGVHKRTRKCDNPASEGGGKDCEGEAVNTKPCSIAMKCPIDGKWSEWSEWESCDKCCGGGSQRRDRTCDNPPPGPNGKKCQGERIDSRKCNTNAC 204
            WEEC     R      G+QT  +  N   ++   G  C G    I    I   P   G W  W  W  C  +CG G   R R C+NP    GG  C+G     + C+    CPI GKW+ W+ W +C   CGGG+++R R C +P P   G+KC+G  + S  CN++ C
Sbjct: 4595 WEECTRSCGR------GNQTRTRTCNNPSVQ-HGGRPCEGNAVEIIMCNIRPCPVH-GAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCN-ERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPC 4754
The following BLAST results are available for this feature:
BLAST of TCONS_00014443-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN11.281e-3245.54Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
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