TCONS_00014331 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014331
Unique NameTCONS_00014331
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1638

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014331 ID=TCONS_00014331|Name=TCONS_00014331|organism=Clytia hemisphaerica|type=transcript|length=1638bp
aaaaatgctTATGGAAATATCCAGTTTGAAATTACTTTGCCCtataaaaa
gataatattttttgtcaatgtGTAGAAACTACAAAtctgaaaatgacaaa
agatGATATTTGCAGTTGTGGTAACACCAAGCAGCCAACACAATCACCAG
ATCCTTTGTTAAAAACACAGAGTGAATTGGTTGAAGAATTTTATTCTGGT
GTAACATTGCACGGATTTCGTTTCTTGTTTGAAGGAAGATGGATTCGAAG
ATTAATTTGGTTCATTATATGTTTTGCCGTCTTTGGGTTTTCGATATACT
TGACTTACGGTCTATTCAGTGAATTTTTAGATCGTAAAACTTCAGTTGCG
ATCTCACGATCATACACTGAACAAGCTTTGGATTTCCCGTCAGTTTCAAT
ATGTCCATTAAACGTTCAATCAAAAGCCAAAATGAAGAACTTATCTATTG
ATTACACAATAGATGAATTTATTATCATGAAAGATAAACTACTCTTTGGA
CATGATTTAAATCCAGAGCTAAATATTACCGTTGATCAGTTTGTCAACGA
TTTAGAAGCTGCTGGAGTGAACAATCTGCttgattttatgaaaatgtATC
AATTAGACTTTGATGAGATTGCTTCTACAGATGTATTAGCTGAATATCTT
GTCGGCGGGTCGGTTTGTTCTATTTATGGTCAAGATTGTGAAGATTCAAT
GTTTACGGAGCGAATCTGGAGACATAAAAGGTGTTTACAATTCAATTCTT
TTATGCCAGGCGGTGAACCTTTTACAGCTCGTAAAGAATCAGATTATTTC
ACAGGTTTTCAGTTAGAGCTAGATCTTGGTGGAACGGAATATTATCAATC
TCCATCAGCGCATAATGGAGTGTTGTTGATTATTGAGAACTATGGCAATG
TTGATGACNGTTTTCAGTTAGAACTAGATCTTGGTGGAACGGAATATTAT
CAATCTCCATCAGCGCATAATGGAGTGTTGTTGATTATTGAGAACTATGG
GAATGTTGATGATTACGTTCCAATCAATGAAATCGTTACTGTCATGCCAG
GGACACAGATGTATGTGAAATTAACTGAAAATGAGATCACGATGTTGCCA
AGTCCCTACGCAACTGATTGTCGAGaagttgatttcaaatttgttgaTCC
AAAAACCAGATACACGCAAGGAGCCAAATTCTGCAAACTGGAAGAAGTTG
CATGTTACAATGGAGAAAGAAGTATATCTTGTATTAATCTGGCTCTCATT
ACCAGACATTTTCCAGAAAGGTTTCCAGTCTAAAGTTTGATAACAAAGac
tttaattatttaattaaataattgaaataggactttatcaattttcataT
CCCTTGGTAAATTTACTCCTCGTCACAATACAAAGTATTTCTCTTCCTTA
AATGGGAATACTACCATTTTATCCTCTTATCCAGGAGGGTACTACCCCCT
TGCCGACCGAcaggggtgctccgctgaggtttcgaaaaatggaccctacg
tgagactcgtttttttcgaaaattttgccGAAACTTGCGAAAAAATTGAC
CCTGATTGgaactgaaattccaaaattttcgagagactgatttttctatt
ttggtatttttgcgaccctacatGGGACTCGTGTGGAG
Run BLAST on NCBI

transcript from alignment at sc0000185:373072..376923-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014331 ID=TCONS_00014331|Name=TCONS_00014331|organism=Clytia hemisphaerica|type=transcript|length=3852bp|location=Sequence derived from alignment at sc0000185:373072..376923- (Clytia hemisphaerica)
AAAAATGCTTATGGAAATATCCAGTTTGAAATTACTTTGCCCTATAAAAA
GATAATATTTTTTGTCAATGTGTAGAAACTACAAATCTGAAAATGACAAA
AGATGATATTTGCAGTTGTGGTAACACCAAGCAGCCAACACAATCACCAG
ATCCTTTGTTAAAAACACAGAGTGAATTGGTTGAAGAATTTTATTCTGGT
GTAACATTGCACGGATTTCGTTTCTTGTTTGAAGGAAGATGGATTCGAAG
ATTAATTTGGTTCATTATATGTTTTGCCGTCTTTGGGTTTTCGATATACT
TGACTTACGGTCTATTCAGTGAATTTTTAGATCGTAAAACTTCAGTTGCG
ATCTCACGATCATACACTGAACAAGCTTTGGATTTCCCGTCAGTTTCAAT
ATGTCCATTAAACGTTCAATCAAAAGCCAAAATGAAGAACTTATCTATTG
ATTACACAATAGATGAATTTATTATCATGAAAGATAAACTACTCTTTGGA
CATGATTTAAATCCAGAGCTAAATATTACCGTTGATCAGTTTGTCAACGA
TTTAGAAGCTGCTGGAGTGAACAATCTGCTTGATTTTATGAAAATGTATC
AATTAGACTTTGATGAGATTGCTTCTACAGATGTATTAGCTGAATATCTT
GTCGGCGGGTCGGTTTGTTCTATTTATGGTCAAGATTGTGAAGATTCAAT
GTTTACGGAGCGAATCTGGAGACATAAAAGGTGTTTACAATTCAATTCTT
TTATGCCAGGCGGTGAACCTTTTACAGCTCGTAAAGAATCAGATTATTTC
ACAGGTTTTCAGTTAGAGCTAGATCTTGGTGGAACGGAATATTATCAATC
TCCATCAGCGCATAATGGAGTGTTGTTGATTATTGAGAACTATGGCAATG
TTGATGACNGTTTTCAGTTAGAACTAGATCTTGGTGGAACGGAATATTAT
CAATCTCCATCAGCGCATAATGGAGTGTTGTTGATTATTGAGAACTATGG
GAATGTTGATGATTACGTTCCAATCAATGAAATCGTTACTGTCATGCCAG
GGACACAGATGTATGTGAAATTAACTGAAAATGAGGTATGAATTAAATGC
ATTGAATTTTGTTCTTATCTTTAATATCAGCCCTGCTTTGTCGAATCCTG
GAATGATTTGCGACTGTAGCATGAAGGTAGAGTATCCAGCTACGGTGCAC
AAGGTTGTTGGTTCGATCCCCAGCCGGGTCATACCAGCGATTCCCAAAAT
GATACTTGATGCCTCTCTGATTGATGCTCAGCAACTAGAGACTTATCGAG
GGTAAGTGGAAAAATCCAGGGAAAAGAGTGGCGTCCTCACCTACCTTCGG
CTAAATAGCTAGAGAAAAGGGAGCCTTCGGGTCGCCCTCGAATGCGTTTG
CAAACTTACTTACTTACAATTTGAATAAACATTTAGATCACGATGTTGCC
AAGTCCCTACGCAACTGATTGTCGAGAAGTTGATTTCAAATTTGTTGATC
CAAAAACCAGATACACGCAAGGTATTTGTGTGATTGATTGCATCATTGCG
CATGTGTATGAGAAATGCGGTTGTTTAGGCGAAGATTATCACAGAATCCT
AAATATACCAGGTATGAATTATTATTATAGAATCACGCTCAGTCTCCGAA
CTTGATGATTTTAGATTCTAGACTGCACAAATATCTGAGATAAGTTTTGT
TACGGGATGGATGCCTCAAAAGCCACGTGCGCTTATATATATTTTTTTAT
AAGCATATAAAAATCCGAAAACAGGCCCCAGAGATGCTTAGGTCGAAAAA
AATGCTTCAGGGATGCTTATATCCTAATACCTAATACTGCTTATATGCTG
CTATACTACTATAATACTGCTTATATCCATACTACAAAGTAGCTTATATG
TACTTTCTTCATAGGCTCGAGGTAATGCTTAACATATGCGTAATTTTCCC
CCATATCTGAGCCTAGATATGCTTACAAGTGCAATGCTTATAAAAAAACA
TGTATACCAGGAGTTCTTGGCGATATCTGGAGATGGGATTTATTGACTCC
GTCAAGATTCATCAAGGAAGGCCATTTTTGTACAAAAGGCCGTAAAATTT
GATTTTTATCAATTTTGTTCAGGGCGGGGGAGTTGAATAAAAATGATTTC
CCAAGAACTAACTTTAACCAACCCTATTTTTATCAGGGGGGGTGTTTTCC
ACCAGGCTGCCACTCTTTCGCTAATAGCTCACTGAAAAAAAATTTTAACA
CTCTGAAAGTTTTCGACTTTTAATATAAAACTATTAGCAGCATGTATACC
AAATTTTACTGTTATACACCGACCAGATCAGGCTTTATGACTTTTTTGTG
CAGGCATATCATAAAATCCNAGATCAAAAGTTATACAAGGCTGGTGGAAA
ACACCCCCCCTTGAGAATACAAAATCCGAAAAAGCCTGATAATAATAGGG
TTAACCAAGCGAGCTGTAGAAAAGCTCTCTGGAAAAACAGTGAATAAAAA
CTACACATGGATGCGTTGTCCATATCTACACATTCTCTATATAGGCTAAT
TCCGCCAAGAAATGTAAAATGATGATGTTGTTAGTTTTAACTTTCATGTC
ATAACCTTTTTANTTAGGTATCAATGATAAATTTTAAAAAATATTTTAAA
AATTTTCAAAAACTGCTGATGTCATCAAAAATGACGTCATTGTTTTTTGA
AAAAATTTACTCATTTTCTGCATGGATTTANNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCATC
GGTCAGCGATAATTGTTAAACTTTGTGATGACGTCATCACCTTTATGATG
ACGTCATCAACCCAAATTTTTTTCTATGAACTCCTTTAATGCTAGAGAAT
ATTTGTGCCAAATTTCAAGTCCATACCTTTTCTAGATCAAAAGTTATACA
AGGCTGGTGGAAAACACCCCCCCTTGAGAATACAAAATCCGAAAAAGCCT
GATAATAATAGGGTTAACCAAGCGAGCTGTAGAAAAGCTCTCTGGAAAAA
CAGTGAATAAAAACTACACATGGATGCGTTGTCCATATCTACACATCCTC
TATATAGGCTAATTCCGCCAAGAAATGTAAAATGATGATGTTGTTAGTTT
TAACTTTCATGTCATAACCTTTTCATTTTCTTAGGAGCCAAATTCTGCAA
ACTGGAAGAAGTTGCATGTTACAATGGAGAAAGAAGTATATCTTGTATTA
ATCTGGCTCTCATTACCAGACATTTTCCAGAAAGGTTTCCAGTCTAAAGT
TTGATAACAAAGACTTTAATTATTTAATTAAATAATTGAAATAGGACTTT
ATCAATTTTCATATCCCTTGGTAAATTTACTCCTCGTCACAATACAAAGT
ATTTCTCTTCCTTAAATGGGAATACTACCATTTTATCCTCTTATCCAGGA
GGGTACTACCCCCTTGCCGACCGACAGGGGTGCTCCGCTGAGGTTTCGAA
AAATGGACCCTACGTGAGACTCGTTTTTTTCGAAAATTTTGCCGAAACTT
GCGAAAAAATTGACCCTGATTGGAACTGAAATTCCAAAATTTTCGAGAGA
CTGATTTTTCTATTTTGGTATTTTTGCGACCCTACATGGGACTCGTGTGG
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008012XLOC_008012Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014331-exon-sc0000185-1575043694:375839..376923TCONS_00014331-exon-sc0000185-1575043694:375839..376923Clytia hemisphaericaexon
TCONS_00014331-exon-sc0000185-1575043694:375403..375487TCONS_00014331-exon-sc0000185-1575043694:375403..375487Clytia hemisphaericaexon
TCONS_00014331-exon-sc0000185-1575043694:373072..373539TCONS_00014331-exon-sc0000185-1575043694:373072..373539Clytia hemisphaericaexon
TCONS_00014331-exon-sc0000185-1510915933:375839..376923TCONS_00014331-exon-sc0000185-1510915933:375839..376923Clytia hemisphaericaexon
TCONS_00014331-exon-sc0000185-1510915933:375403..375487TCONS_00014331-exon-sc0000185-1510915933:375403..375487Clytia hemisphaericaexon
TCONS_00014331-exon-sc0000185-1510915933:373072..373539TCONS_00014331-exon-sc0000185-1510915933:373072..373539Clytia hemisphaericaexon
TCONS_00014331-exon-sc0000185-1491911889:375839..376923TCONS_00014331-exon-sc0000185-1491911889:375839..376923Clytia hemisphaericaexon
TCONS_00014331-exon-sc0000185-1491911889:375403..375487TCONS_00014331-exon-sc0000185-1491911889:375403..375487Clytia hemisphaericaexon
TCONS_00014331-exon-sc0000185-1491911889:373072..373539TCONS_00014331-exon-sc0000185-1491911889:373072..373539Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000185supercontigsc0000185:373072..376923 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0562207	0.0550032	0.0334806	0	0	0	0.108251	0	0	0	0.246524	0.37472	0	0.073835	0	0	0	0	0.160755	0	0.574282	3.62067e-06	0.401221	0.560971	0	0	0.082668	0.112301
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014331 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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