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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014193 ID=TCONS_00014193|Name=TCONS_00014193|organism=Clytia hemisphaerica|type=transcript|length=3907bpRun BLAST on NCBI protein sequence of TCONS_00014193-protein >TCONS_00014193-protein ID=TCONS_00014193-protein|Name=TCONS_00014193-protein|organism=Clytia hemisphaerica|type=polypeptide|length=907bp MGMSSKGKKIAKDGIVVDDMDLKKEVTIEEQKQCITRSHFKDDRGPESYFRun BLAST on NCBI transcript from alignment at sc0000183:185775..217184+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014193 ID=TCONS_00014193|Name=TCONS_00014193|organism=Clytia hemisphaerica|type=transcript|length=31410bp|location=Sequence derived from alignment at sc0000183:185775..217184+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000183:185775..217184+ >TCONS_00014193 ID=TCONS_00014193|Name=TCONS_00014193|organism=Clytia hemisphaerica|type=CDS|length=51756bp|location=Sequence derived from alignment at sc0000183:185775..217184+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00014193 vs. Swiss-Prot (Human)
Match: JADE1 (Protein Jade-1 OS=Homo sapiens GN=JADE1 PE=1 SV=1) HSP 1 Score: 405.601 bits (1041), Expect = 4.313e-123 Identity = 226/514 (43.97%), Postives = 301/514 (58.56%), Query Frame = 1
Query: 379 AEVFRTDFITAMKVPDSQPLPAGKTITLKDTWRQEWEKGVQVPVHPEKILKAVVRNSGIELPQVNSEN---IFKMPEKFFKFS-----EENYVKAGRESLSSCNYDLDDIDMGWLKSTETMRTLKKSPSIDALTMERAITWFERECFSKMAHAVATKEGLSIEYDESTQCNVCLSPDAEDGNEIIFCDVCNMCVHQHCYGVLEIPEGNWLCNPCSRGVLDPPCCLCPAKGGAMKRIKDSYEWIHVICAWWVPEVKIEDVKFIERIRK-DKIPASRWNLLCCICREKDGACIQCSVKRCVKAYHVTCAVKEGLEMKTVVVPEKDDVQHISFCSKH----------------------CVPV-PLEHNPHRTKCGEEVE--NNRIKELRKLESEFYSLVSVSKASRELKLAKEVTRRLLSYWTMKRRENDNAPLIALTLEQQEKLSGKQGVVLLNQQKTLEMERFLHLRQDLERLRNLCYMIVRREKVRKEIQRTSMEVFYKQNDMLLDENEDWSG 1818
+EVFRTD ITAMK+ DS L + L D WRQEWEKGVQVPV P I + V R V SE +F P+K+ S E YV + S C YDL+D+D WL+ T P +D TMER + FE+ C+ M HA+ T+EGL IEYDE C+VC SPD EDGNE++FCD CN+CVHQ CYG+L++PEG+WLC C+ GV P C LCP KGGAMK + +W+HV CA W+PEV I + +E I K IP+SRW L+C +C EK GA IQCSVK C A+HVTCA GLEMKT++ E D+V+ S+C KH C P PLE + EE + R ++L++LE EFY+ V++ +R L+L +EV L YW +KR+ N N PLI ++++ L+ ++ VL + ++ F HLRQDLER+RNL YM+ RREK+++ + + ++F +L E E SG
Sbjct: 45 SEVFRTDLITAMKLHDSYQLNPDEYYVLADPWRQEWEKGVQVPVSPGTIPQPVAR--------VVSEEKSLMFIRPKKYIVSSGSEPPELGYVDIRTLADSVCRYDLNDMDAAWLELTNEEFKEMGMPELDEYTMERVLEEFEQRCYDNMNHAIETEEGLGIEYDEDVVCDVCQSPDGEDGNEMVFCDKCNICVHQACYGILKVPEGSWLCRTCALGV-QPKCLLCPKKGGAMKPTRSGTKWVHVSCALWIPEVSIGSPEKMEPITKVSHIPSSRWALVCSLCNEKFGASIQCSVKNCRTAFHVTCAFDRGLEMKTILA-ENDEVKFKSYCPKHSSHRKPEESLGKGAAQENGAPECSPRNPLEPFASLEQNREEAHRVSVRKQKLQQLEDEFYTFVNLLDVARALRLPEEVVDFLYQYWKLKRKVNFNKPLITPKKDEEDNLAKREQDVLFRR-----LQLFTHLRQDLERVRNLTYMVTRREKIKRSVCKVQEQIFNLYTKLL--EQERVSG 541 The following BLAST results are available for this feature:
BLAST of TCONS_00014193 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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