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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014147 ID=TCONS_00014147|Name=TCONS_00014147|organism=Clytia hemisphaerica|type=transcript|length=3015bpRun BLAST on NCBI protein sequence of piwi >TCONS_00014147-protein ID=TCONS_00014147-protein|Name=piwi|organism=Clytia hemisphaerica|type=polypeptide|length=675bp MTGRARGRARGRGRAQQNAPPPGGAPPPQQSAPQAVGRGRARGGPPPAQSRun BLAST on NCBI transcript from alignment at sc0000181:430501..451967- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014147 ID=TCONS_00014147|Name=TCONS_00014147|organism=Clytia hemisphaerica|type=transcript|length=21467bp|location=Sequence derived from alignment at sc0000181:430501..451967- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000181:430501..451967- >TCONS_00014147 ID=TCONS_00014147|Name=TCONS_00014147|organism=Clytia hemisphaerica|type=CDS|length=20280bp|location=Sequence derived from alignment at sc0000181:430501..451967- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00014147 vs. Swiss-Prot (Human)
Match: PIWL1 (Piwi-like protein 1 OS=Homo sapiens GN=PIWIL1 PE=1 SV=1) HSP 1 Score: 466.848 bits (1200), Expect = 2.539e-148 Identity = 216/421 (51.31%), Postives = 304/421 (72.21%), Query Frame = 2
Query: 884 FETNIL-LNGRKLPTQPMYQRDQKFTYQPGNADWQKETRGKLLISTFNMQKWVLIFSQRDEKVAQDFLRTLKTVASPMGMRVADPQLCRLQSDQPRQYIQSLKEQIKPDTEIVVCIVPNNRKDRYDAIKKITCVENPVPSQVVVSRTLSKQQMLMSVCTKIAIQLNCKLGGEVWATEIPVKKLMVIGFDVYHDSMNKGQSIGGFIASTNDSLTRYYSRITKQRSHNEICSQLKICMTGALKKYREVNGHDPDRIIVYRDGVGDGQIYDVKDHEVPQF----KAAIQEFNPNITKFSMIIVKKRVSTRLFAHSRGGISNPMPGTIVDSAVTRPEFYDFFLCSQTVRQGTVTPVNYNIIEDSSGLKPDHLQKLTYKLCHLYYNWPGTIKVPAPCQYAHKLAFLVGQSVHTDPALELSDRLYYL 2131
F++N+L +GR L T+ ++Q + F Y P ADW KETRG LIS + W+LI+++R+ + A ++ L V MGM++ + + D+ Y++ L++++ DT+IVVC++ +NRKD+YDAIKK C + P PSQ VV+RTL KQQ +M++ TKIA+Q+NCK+GGE+W +IP+K +M++G D YHD +SI GF+AS N+ +TR++SR Q E+ LK+C+ AL+ + N + P RIIVYRDGVGDGQ+ + ++EVPQF K+ + +NP +T +I+VKKRV+TR FA S G + NP+PGT++D VTRPE+YDFF+ SQ VR G+V+P +YN+I D+SGLKPDH+Q+LTYKLCH+YYNWPG I+VPAPCQYAHKLAFLVGQS+H +P L LS+RLYYL
Sbjct: 445 FDSNLLSFSGRILQTEKIHQGGKTFDYNPQFADWSKETRGAPLISVKPLDNWLLIYTRRNYEAANSLIQNLFKVTPAMGMQMRKAIMIEV-DDRTEAYLRVLQQKVTADTQIVVCLLSSNRKDKYDAIKKYLCTDCPTPSQCVVARTLGKQQTVMAIATKIALQMNCKMGGELWRVDIPLKLVMIVGIDCYHDMTAGRRSIAGFVASINEGMTRWFSRCIFQDRGQELVDGLKVCLQAALRAWNSCNEYMPSRIIVYRDGVGDGQLKTLVNYEVPQFLDCLKSIGRGYNPRLT---VIVVKKRVNTRFFAQSGGRLQNPLPGTVIDVEVTRPEWYDFFIVSQAVRSGSVSPTHYNVIYDNSGLKPDHIQRLTYKLCHIYYNWPGVIRVPAPCQYAHKLAFLVGQSIHREPNLSLSNRLYYL 861 HSP 2 Score: 152.525 bits (384), Expect = 1.236e-37 Identity = 71/188 (37.77%), Postives = 124/188 (65.96%), Query Frame = 2
Query: 344 MQKMNVQEERPRQR--RGIGEFKTRSFKDPATDKKGTSGEPVQILTNYFKVDKMPRFEGLHQYVVAFDPDIQSQKLKGFLLFSMQDVIGEVKVFDGMSLFLPRKLAEPVVERCVETRDGSSIKVKITHTNEVPVNSPQVVQLMGILFRRQLRHLNMQLVGRHYFNPSRKIDVPAHKMVVWPGFETNIL 901
Q++++ E R+R +G ++ K G+SG V++ TN+F++ P++ L+QY + ++P +++++L+ LLF +D+IG+ FDG LFLP++L + V E +TR+G +++ IT TNE+P SP +Q I+FRR L+ +N+Q +GR+Y+NP+ ID+P+H++V+WPGF T+IL
Sbjct: 71 FQELSLAERGGRRRDFHDLGVNTRQNLDHVKESKTGSSGIIVRLSTNHFRLTSRPQW-ALYQYHIDYNPLMEARRLRSALLFQHEDLIGKCHAFDGTILFLPKRLQQKVTEVFSKTRNGEDVRITITLTNELPPTSPTCLQFYNIIFRRLLKIMNLQQIGRNYYNPNDPIDIPSHRLVIWPGFTTSIL 257 The following BLAST results are available for this feature:
BLAST of TCONS_00014147 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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