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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013505 ID=TCONS_00013505|Name=TCONS_00013505|organism=Clytia hemisphaerica|type=transcript|length=2477bpRun BLAST on NCBI protein sequence of TCONS_00013505-protein >TCONS_00013505-protein ID=TCONS_00013505-protein|Name=TCONS_00013505-protein|organism=Clytia hemisphaerica|type=polypeptide|length=438bp MNRTQQQTPPGLAAIYRYLRRIYPNQTNPLQVTALVKYWLNGPDPLDFVSRun BLAST on NCBI transcript from alignment at sc0000168:276591..283019- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013505 ID=TCONS_00013505|Name=TCONS_00013505|organism=Clytia hemisphaerica|type=transcript|length=6429bp|location=Sequence derived from alignment at sc0000168:276591..283019- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000168:276591..283019- >TCONS_00013505 ID=TCONS_00013505|Name=TCONS_00013505|organism=Clytia hemisphaerica|type=CDS|length=14487bp|location=Sequence derived from alignment at sc0000168:276591..283019- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013505 vs. Swiss-Prot (Human)
Match: SUFU (Suppressor of fused homolog OS=Homo sapiens GN=SUFU PE=1 SV=2) HSP 1 Score: 444.506 bits (1142), Expect = 1.348e-146 Identity = 223/451 (49.45%), Postives = 303/451 (67.18%), Query Frame = 1
Query: 439 PPGLAAIYRYLRRIYPNQTNPLQVTALVKYWLNGPDPLDFVSMYDNPGDSILNVPPHWHYVSCGLSDLHGDGRIHEATQDDTGPSGYGFELTFRLRKMPGEEYPPTWPAELMQNLAKYVFKSEQMLCATDHISWHTPLNANDKMTNINQMLLSEDPQLHQLNTPFGYVNFMQIIGVFTEELQAAQQWNGLAVINLLRQIPEAGGHWFVTDMTRQKSIFQMNPRLREMVEIGIADEGSNLSGVSAKCWWGECSKDRIHEALATAHNNQYPERPTSSALSNRIRSSLQ--------------NYRNEAAVENERA-SRASNYSSVS-------ELLKSRPITEGLQLRFNLEAAALLPLAIRGRLAHGRHFTFKGAQSDCAITFVSTDITGTSVDEKYPYAALQNWLQVLIPDDFLETLAHDFDQLQRRPDEISLPKLYAWPQRNLMITIVGD 1725
PPGL AIY RR+YP+Q NPLQVTA+VKYWL GPDPLD+VSMY N G N+P HWHY+S GLSDL+GD R+HE T D GPSG+GFELTFRL++ GE PPTWPAELMQ LA+YVF+SE C+ DH+SWH+PL+ ++ + I MLL+EDPQ+ + TPFG V F+QI+GV TEEL +AQQWNG ++ LLR +P AGG W +TDM R ++IF+++P L+E V+ GI +GSNLSGVSAKC W + S+ + + + R S + +IR +L+ N + + + ++RA SR + S S EL+++R + E + L+FN E+ AL+PL +RGRL HGRHFT+K D AITFVST + G E++PYAA WLQ+L+ ++F+E + D + L P+E LPK Y+WP++ L ++I+ D
Sbjct: 31 PPGLHAIYGECRRLYPDQPNPLQVTAIVKYWLGGPDPLDYVSMYRNVGSPSANIPEHWHYISFGLSDLYGDNRVHEFTGTD-GPSGFGFELTFRLKRETGESAPPTWPAELMQGLARYVFQSENTFCSGDHVSWHSPLDNSE--SRIQHMLLTEDPQMQPVQTPFGVVTFLQIVGVCTEELHSAQQWNGQGILELLRTVPIAGGPWLITDMRRGETIFEIDPHLQERVDKGIETDGSNLSGVSAKCAWDDLSRPPEDDEDSRSICIGTQPRRLSGKDTEQIRETLRRGLEINSKPVLPPINPQRQNGLAHDRAPSRKDSLESDSSTAIIPHELIRTRQL-ESVHLKFNQESGALIPLCLRGRLLHGRHFTYKSITGDMAITFVSTGVEGAFATEEHPYAAHGPWLQILLTEEFVEKMLEDLEDLT-SPEEFKLPKEYSWPEKKLKVSILPD 476 The following BLAST results are available for this feature:
BLAST of TCONS_00013505 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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