TCONS_00013301 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013301
Unique NameTCONS_00013301
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length885

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013301 ID=TCONS_00013301|Name=TCONS_00013301|organism=Clytia hemisphaerica|type=transcript|length=885bp
TGGAAAACATGACAACACAAATAAGCAATAAAACATCTGAAAAAGAAGGA
GAGATCCACCTACATTGTCTTTCCTGTTATTCTTCATCatgtcacATTTT
CAAACAATGTCCTATGGTGTACTGTTCCAACCAATGTGGTGTGCAATACC
ACCAATGTAAAGAGAAAGAGCATGTTCATGTGTGCAGGGAGCAGATTCGC
CCATGTGTCAATAAGCTTTACGGATGTCCATTTGAAGTGACCAGTGTTGA
ACTACTTACTCATTTAGAGgTTTGTCCAGCAAACGTTATTCATTGTGCAG
TCAATTGGAATAGGGCTCCTTTGTACTCCAAGGTTCGTGAGCAATGGTTA
CCATTCCACGATGGGAATCCTGTAAGCGTTGAAGGACAACTTGATGTGGA
GTTTGCTTTGGCTGATCAAGAAAGATTAAGAAAAGAATACAGATATCGAA
TGATTAGAGGTGCACGGAAACGTAGCAGTCTGAACAAGAAAGTCGGGCGC
ATCGAAAAAACGCGAATCAAGGATCTGGAAAGACTTATCAGCGGTGGCAA
AACAGAGGCAGACATTCCGACAAGTGAAGCAAAAGACGAAGTAAACAATG
TTTTCGTGACGTGCGATAAATTATTTCATGAAGAATTACACGAAGCTGGT
AACAAAGACCATGTATCCAACACTAACATCCGTGACTCTTATTTTGACGT
TCCTGATACGTACTACACCATAAACCGGAGTGGTTCTAATACCAATTATA
AGCAACAGATAATCACTGGGTCGGAACCCACTTGTGTTGCAGCATCGTTG
ATCGTGCCGGACTGGTTATCGTCATTTGGTGTAAGAAGACGTATGAGAAA
TGTGGATCCAGCTCGTGGAAAGAGGATAAAAAGGT
Run BLAST on NCBI

protein sequence of TCONS_00013301-protein

>TCONS_00013301-protein ID=TCONS_00013301-protein|Name=TCONS_00013301-protein|organism=Clytia hemisphaerica|type=polypeptide|length=294bp
ENMTTQISNKTSEKEGEIHLHCLSCYSSSCHIFKQCPMVYCSNQCGVQYH
QCKEKEHVHVCREQIRPCVNKLYGCPFEVTSVELLTHLEVCPANVIHCAV
NWNRAPLYSKVREQWLPFHDGNPVSVEGQLDVEFALADQERLRKEYRYRM
IRGARKRSSLNKKVGRIEKTRIKDLERLISGGKTEADIPTSEAKDEVNNV
FVTCDKLFHEELHEAGNKDHVSNTNIRDSYFDVPDTYYTINRSGSNTNYK
QQIITGSEPTCVAASLIVPDWLSSFGVRRRMRNVDPARGKRIKR
Run BLAST on NCBI

transcript from alignment at sc0000164:310161..314164-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013301 ID=TCONS_00013301|Name=TCONS_00013301|organism=Clytia hemisphaerica|type=transcript|length=4004bp|location=Sequence derived from alignment at sc0000164:310161..314164- (Clytia hemisphaerica)
TGGAAAACATGACAACACAAATAAGCAATAAAACATCTGAAAAAGAAGGA
GAGATCCACCTACATTGTCTTTCCTGTTATTCTTCATCATGTCACATTTT
CAAAAAATGTCCTATTGTGTACTGTTCCAACCAATGTGGTGTGCAATATC
ACCAATGTAAAGAGAAAGAGCATGTTCATGTGTGCAGGGAACAGATTCGC
CCATGTGTCAATAAGCTTTACGGATGTCCATTTGAAGTGACNATCTTTGA
ATATTTTCGATCTTATGTGTGGCTCTGCCACCCATTCAACAAATGGTAAA
CTCGTCTGGTGAGTTGCCGGTTAACCACGTGCAACGTGGCCTGTGTTTGG
GGTTCACAGGTATTGGGATCTGCAGCCCATAACGTCCCCCGGTTGTTTGG
AAATATTTGGGCGCTATATTTTAACACCACCCTAATGAAATTAACAACCG
CCCTCTAACCGCCCATTTGAAAATTGAAATTTGCGACACCCCTTGAAAAT
CCTGGCTACGCCACTGCTTCCCTTTTAAGGTTTAAGTCTAGTCTTAGTTG
TTGTGTGTTTAGCCTTGAAACTGCTTCCATATAAGGCTAATATCTCTTAT
TATTCTTTCCCTTTTGTTTTTTCTTGTACACTGGATGTATATCTTTATGT
TTATGTTAATAATAATTGGCCTTAAGATTTTGATTTGGTATTTACTGTTA
GCCAATCACTGCTCCTAACTAACGTGCTCAGAGTAAGAATTTTTTCTGGT
GGGGTCTGGAAATCATCCTGATTATAAAAAGTATTTATTAAGGCCACTTT
TTTGTACATTTTAGGCGTTAAAATAGAAATGAAACAAAAGAAAAGTATAT
AATATGGAAAACATGACAACACAAATAAGCAATAAAACATCTGAAAAAGA
AGGAGGGATCCACCTACATTGTCTGTCTTGTTATTCTTCATCATGTTACA
TTTTCAAACAATGTCCTATGGTGTACTGTTCCAACCAATGTGGTGTGCAA
TACCACCAATGTAAAGAGAAAGAGCATGTTCATGTGTGCAGGGAGCAGAT
TCGCCCATGTGTCAATAAGCTTTACGGATGTCCATTTGAAGTGACCAGTG
TTGAACTACTTACTCATTTAGAGGTATGTGCAATAGAATAAATCGATGAA
AAGACACCAAATTACTTTTAGGTATTTATATTATGTTAATTTTTTTGGAC
CTACCTCGTAGGTCCTTTAAATTAACCTTCGTTCGTCCGCCGTCTATTCG
TTCGCCTGTTACCTGCTTTTCTCAGGATCAGCCTATTAGTTTTTTCTAAT
TGTTTGCATAGTGATGCCAAATGACAGTACCCAAAAAGTGATGGAGCCCG
ACTTTTGAGAAAAAATGGGATTTTTTGGACATTGTGTGAAATTCCAGTCC
AAACCAAAAAATCCAGTAGTACCTGCTTTATTTGTATTTTACAGACCATA
GAGATATTACAGACCATTCTCAAAATACTAATTTTCGTTCTGAATTAGCC
AATACATGAAGTCTCAGTTTTAAGGCTATAACTCCTGACCACTTGATTTA
AAATATAGAATACTTTTAGAAGGTACCATAACCGTTGTCTAATTCTCAAG
TTACAAGCTTTTATGCCAGTTTGAAATTTTGGATTTTAAAATAAAAGCTG
ACAATTTTCACTCTCTTATCAAAAATTGTTTCGTGCTGGAAAGTTAACAT
TCTCCTTATTCGCCTACACAAGAGATTCTAAAAAAATAGAATATCTGCAG
CACAGCTTCAATTTTTAGTTGGTCTGTACTGATCAGCTTTTTGAACCTAC
CTTGTGGTCCTACTATAAGTTAACCTGTGTTCGTTCGTTCGTTACCAGCC
TTTCTCGAGATTAGCTCATAGGATTTTTTAGATTTTTAGCACAAAGATTT
AAAACGGTGATTCCCAAAATGCGATGGAGTCTAATTTCGAAGAAAAAAAT
TATTCTGGTCGCCAGTGGTTTTTCGGGAATTCCTCGTGATTTTCTCATTC
GTTTTTATTGACGCAGATTGACGTTTTGTCTATTTTGAATTTAATGTTTT
CTGTTGATCAGCCAGGTAGGTCCATAAAAGAATCACTTAGGTAGGTCCAT
AAATGAATCACTTGTTATTGTTTTTTTAATTCAGGTTTGTCCAGCAAACG
TTATTCATTGTGCAGTCAATTGGAATAGGGCTCCTTTGTACTCCAAGGTT
AGTACAGCCCATCATATAATGTCTATCAGCCTCAGAAATTGTGTGACAAT
TTTCTATTTATTCTCTAAAAAGCCCCTTTTAACTATGAAAATACTATCTT
TGCTGGAAAATCGGGTTTTGGGTATACTTAGAAAGTTATACTCCAAAAAG
ATGCCTTTTTTATCTATGAAATTCAAAGGATGAAAAAGTGGTGTTTTAAG
AGTAGATCTTCTTAAGTCATTTCTCATAATTTATCTTTAAGATACCGGCT
TATGAAGTATTCTGTTTGGGTATTATATTGTAAAAGGTTGGAATGATAAA
AAAGGGGTAATTGGACTATAAAGATAAAGAGAGACCTCCTTGCACGACCT
CCTTGTATTAACCAATGCTCGAAATAATGATTATCTTTAGATTCTTTTCA
CCGTGACTCAAATATCGATTTCTTTTTGTAATATTGGTAATTTTGTTCTT
GATTTTTCATCAGGTTCGTGAGCAATGGTTACCATTCCACGATGGGAATC
CTGTAAGCGTTGAAGGACAACTTGATGTGGAGTTTGCTTTGGCTGATCAA
GAAAGATTAAGAAAAGAATACAGATATCGAATGATTAGAGGTTAATAATG
AATTTGTTGTATATGTTTGAGCTGAAATGGTCTTTGAAAATAAGACTTTC
CTCATGATATGCAGGGTGTAACGGGCGGGACCTTCATAATCTTCCAAGTC
TTGAAAAGCTTGAGAAGCAGTATTTCTTTTACATAATAATCTTTGTCTTG
TTTTTGATGGGGTTTGGTACTTCAGCCTATTTTTTGTGGAGAAGAAATCA
CAGTTCAAGCATTTTGTTTTGGGAAATATTCCATTATCATTGGATCTTTT
TGTAGGTGCACGGAAACGTAGCAGTCTGAACAAGAAAGTCGGGCGCATCG
AAAAAACGCGAATCAAGGATCTGGAAAGACTTATCAGCGGTGGCAAAACA
GAGGCAGACATTCCGACAAGTGAAGCAAAAGACGAAGTAAACAATGTTTT
CGTGACGTGCGATAAATTATTTCATGAAGAATTACACGAAGCTGGTAACA
AAGACCATGTATCCAACACTAACATCCGTGACTCTTATTTTGACGTTCCT
GATACGTACTACACCATAAACCGGAGTGGTTCTAATACCAATTATAAGCA
ACAGATAATCACTGGGTCGGAACCCGTTAGTAAATCTTGGCGTGAGGACG
ACGAAGATCCGCTCACGTTAGAGGAGATCGATAAGCGAAGACAGGTTTAT
GACGATTTAGGCTGTAAAGCTTACGGTGCCGGGCTCGGATTGAATATTAA
CGTTGAATGTTTGCCATCTTATTTTGATCAGTACCCGCTCTACCGTTTCG
CGTGCGGCTCGTTGTTCCGTAGAGATCAGTATAAATGGCATTGTCAAAAT
AGCCACGGTGATATTGGTTTCCATGTCAACGGCTGGCTCATGCAACGGTG
CCCCCTCGCGCAGTATGGGTGCCCATACTCGCAATACCGCTTTCAACCTA
ATGACCGCAGCGTCCGGTTTCTTAAAAGCTTTTCATGCTTCACAGCGCCT
TACAACGGTTTGAAGTTGACGAAAAAGACTGGGAATTCTGAGGATGTTCT
TATTTTCGATTTGCCGAATGAACTTTTGATTTATTTATTGTTCTTCCTGG
ATAATTTATCTTTAAACTGTTTGGCGAAGACGTGTCATTTCTTTCAAGAC
TTGTGTTGCAGCATCGTTGATCGTGCCGGACTGGTTATCGTCATTTGGTG
TAAGAAGACGTATGAGAAATGTGGATCCAGCTCGTGGAAAGAGGATAAAA
AGGT

Coding sequence (CDS) from alignment at sc0000164:310161..314164-

>TCONS_00013301 ID=TCONS_00013301|Name=TCONS_00013301|organism=Clytia hemisphaerica|type=CDS|length=5292bp|location=Sequence derived from alignment at sc0000164:310161..314164- (Clytia hemisphaerica)
ACTTGTGTTGCAGCATCGTTGATCGTGCCGGACTGGTTATCGTCATTTGG
TGTAAGAAGACGTATGAGAAATGTGGATCCAGCTCGTGGAAAGAGGATAA
AAAGGGTGCACGGAAACGTAGCAGTCTGAACAAGAAAGTCGGGCGCATCG
AAAAAACGCGAATCAAGGATCTGGAAAGACTTATCAGCGGTGGCAAAACA
GAGGCAGACATTCCGACAAGTGAAGCAAAAGACGAAGTAAACAATGTTTT
CGTGACGTGCGATAAATTATTTCATGAAGAATTACACGAAGCTGGTAACA
AAGACCATGTATCCAACACTAACATCCGTGACTCTTATTTTGACGTTCCT
GATACGTACTACACCATAAACCGGAGTGGTTCTAATACCAATTATAAGCA
ACAGATAATCACTGGGTCGGAACCCGTTCGTGAGCAATGGTTACCATTCC
ACGATGGGAATCCTGTAAGCGTTGAAGGACAACTTGATGTGGAGTTTGCT
TTGGCTGATCAAGAAAGATTAAGAAAAGAATACAGATATCGAATGATTAG
AGGTTTGTCCAGCAAACGTTATTCATTGTGCAGTCAATTGGAATAGGGCT
CCTTTGTACTCCAAGATTTTCAAACAATGTCCTATGGTGTACTGTTCCAA
CCAATGTGGTGTGCAATACCACCAATGTAAAGAGAAAGAGCATGTTCATG
TGTGCAGGGAGCAGATTCGCCCATGTGTCAATAAGCTTTACGGATGTCCA
TTTGAAGTGACCAGTGTTGAACTACTTACTCATTTAGAGGAAAACATGAC
AACACAAATAAGCAATAAAACATCTGAAAAAGAAGGAGAGATCCACCTAC
ATTGTCTTTCCTGTTATTCTTCATCATGTCACACTTGTGTTGCAGCATCG
TTGATCGTGCCGGACTGGTTATCGTCATTTGGTGTAAGAAGACGTATGAG
AAATGTGGATCCAGCTCGTGGAAAGAGGATAAAAAGGGTGCACGGAAACG
TAGCAGTCTGAACAAGAAAGTCGGGCGCATCGAAAAAACGCGAATCAAGG
ATCTGGAAAGACTTATCAGCGGTGGCAAAACAGAGGCAGACATTCCGACA
AGTGAAGCAAAAGACGAAGTAAACAATGTTTTCGTGACGTGCGATAAATT
ATTTCATGAAGAATTACACGAAGCTGGTAACAAAGACCATGTATCCAACA
CTAACATCCGTGACTCTTATTTTGACGTTCCTGATACGTACTACACCATA
AACCGGAGTGGTTCTAATACCAATTATAAGCAACAGATAATCACTGGGTC
GGAACCCGTTCGTGAGCAATGGTTACCATTCCACGATGGGAATCCTGTAA
GCGTTGAAGGACAACTTGATGTGGAGTTTGCTTTGGCTGATCAAGAAAGA
TTAAGAAAAGAATACAGATATCGAATGATTAGAGGTTTGTCCAGCAAACG
TTATTCATTGTGCAGTCAATTGGAATAGGGCTCCTTTGTACTCCAAGATT
TTCAAACAATGTCCTATGGTGTACTGTTCCAACCAATGTGGTGTGCAATA
CCACCAATGTAAAGAGAAAGAGCATGTTCATGTGTGCAGGGAGCAGATTC
GCCCATGTGTCAATAAGCTTTACGGATGTCCATTTGAAGTGACCAGTGTT
GAACTACTTACTCATTTAGAGGAAAACATGACAACACAAATAAGCAATAA
AACATCTGAAAAAGAAGGAGAGATCCACCTACATTGTCTTTCCTGTTATT
CTTCATCATGTCACACTTGTGTTGCAGCATCGTTGATCGTGCCGGACTGG
TTATCGTCATTTGGTGTAAGAAGACGTATGAGAAATGTGGATCCAGCTCG
TGGAAAGAGGATAAAAAGGGTGCACGGAAACGTAGCAGTCTGAACAAGAA
AGTCGGGCGCATCGAAAAAACGCGAATCAAGGATCTGGAAAGACTTATCA
GCGGTGGCAAAACAGAGGCAGACATTCCGACAAGTGAAGCAAAAGACGAA
GTAAACAATGTTTTCGTGACGTGCGATAAATTATTTCATGAAGAATTACA
CGAAGCTGGTAACAAAGACCATGTATCCAACACTAACATCCGTGACTCTT
ATTTTGACGTTCCTGATACGTACTACACCATAAACCGGAGTGGTTCTAAT
ACCAATTATAAGCAACAGATAATCACTGGGTCGGAACCCGTTCGTGAGCA
ATGGTTACCATTCCACGATGGGAATCCTGTAAGCGTTGAAGGACAACTTG
ATGTGGAGTTTGCTTTGGCTGATCAAGAAAGATTAAGAAAAGAATACAGA
TATCGAATGATTAGAGGTTTGTCCAGCAAACGTTATTCATTGTGCAGTCA
ATTGGAATAGGGCTCCTTTGTACTCCAAGATTTTCAAACAATGTCCTATG
GTGTACTGTTCCAACCAATGTGGTGTGCAATACCACCAATGTAAAGAGAA
AGAGCATGTTCATGTGTGCAGGGAGCAGATTCGCCCATGTGTCAATAAGC
TTTACGGATGTCCATTTGAAGTGACCAGTGTTGAACTACTTACTCATTTA
GAGGAAAACATGACAACACAAATAAGCAATAAAACATCTGAAAAAGAAGG
AGAGATCCACCTACATTGTCTTTCCTGTTATTCTTCATCATGTCACACTT
GTGTTGCAGCATCGTTGATCGTGCCGGACTGGTTATCGTCATTTGGTGTA
AGAAGACGTATGAGAAATGTGGATCCAGCTCGTGGAAAGAGGATAAAAAG
GGTGCACGGAAACGTAGCAGTCTGAACAAGAAAGTCGGGCGCATCGAAAA
AACGCGAATCAAGGATCTGGAAAGACTTATCAGCGGTGGCAAAACAGAGG
CAGACATTCCGACAAGTGAAGCAAAAGACGAAGTAAACAATGTTTTCGTG
ACGTGCGATAAATTATTTCATGAAGAATTACACGAAGCTGGTAACAAAGA
CCATGTATCCAACACTAACATCCGTGACTCTTATTTTGACGTTCCTGATA
CGTACTACACCATAAACCGGAGTGGTTCTAATACCAATTATAAGCAACAG
ATAATCACTGGGTCGGAACCCGTTCGTGAGCAATGGTTACCATTCCACGA
TGGGAATCCTGTAAGCGTTGAAGGACAACTTGATGTGGAGTTTGCTTTGG
CTGATCAAGAAAGATTAAGAAAAGAATACAGATATCGAATGATTAGAGGT
TTGTCCAGCAAACGTTATTCATTGTGCAGTCAATTGGAATAGGGCTCCTT
TGTACTCCAAGATTTTCAAACAATGTCCTATGGTGTACTGTTCCAACCAA
TGTGGTGTGCAATACCACCAATGTAAAGAGAAAGAGCATGTTCATGTGTG
CAGGGAGCAGATTCGCCCATGTGTCAATAAGCTTTACGGATGTCCATTTG
AAGTGACCAGTGTTGAACTACTTACTCATTTAGAGGAAAACATGACAACA
CAAATAAGCAATAAAACATCTGAAAAAGAAGGAGAGATCCACCTACATTG
TCTTTCCTGTTATTCTTCATCATGTCACACTTGTGTTGCAGCATCGTTGA
TCGTGCCGGACTGGTTATCGTCATTTGGTGTAAGAAGACGTATGAGAAAT
GTGGATCCAGCTCGTGGAAAGAGGATAAAAAGGGTGCACGGAAACGTAGC
AGTCTGAACAAGAAAGTCGGGCGCATCGAAAAAACGCGAATCAAGGATCT
GGAAAGACTTATCAGCGGTGGCAAAACAGAGGCAGACATTCCGACAAGTG
AAGCAAAAGACGAAGTAAACAATGTTTTCGTGACGTGCGATAAATTATTT
CATGAAGAATTACACGAAGCTGGTAACAAAGACCATGTATCCAACACTAA
CATCCGTGACTCTTATTTTGACGTTCCTGATACGTACTACACCATAAACC
GGAGTGGTTCTAATACCAATTATAAGCAACAGATAATCACTGGGTCGGAA
CCCGTTCGTGAGCAATGGTTACCATTCCACGATGGGAATCCTGTAAGCGT
TGAAGGACAACTTGATGTGGAGTTTGCTTTGGCTGATCAAGAAAGATTAA
GAAAAGAATACAGATATCGAATGATTAGAGGTTTGTCCAGCAAACGTTAT
TCATTGTGCAGTCAATTGGAATAGGGCTCCTTTGTACTCCAAGATTTTCA
AACAATGTCCTATGGTGTACTGTTCCAACCAATGTGGTGTGCAATACCAC
CAATGTAAAGAGAAAGAGCATGTTCATGTGTGCAGGGAGCAGATTCGCCC
ATGTGTCAATAAGCTTTACGGATGTCCATTTGAAGTGACCAGTGTTGAAC
TACTTACTCATTTAGAGGAAAACATGACAACACAAATAAGCAATAAAACA
TCTGAAAAAGAAGGAGAGATCCACCTACATTGTCTTTCCTGTTATTCTTC
ATCATGTCACACTTGTGTTGCAGCATCGTTGATCGTGCCGGACTGGTTAT
CGTCATTTGGTGTAAGAAGACGTATGAGAAATGTGGATCCAGCTCGTGGA
AAGAGGATAAAAAGGGTGCACGGAAACGTAGCAGTCTGAACAAGAAAGTC
GGGCGCATCGAAAAAACGCGAATCAAGGATCTGGAAAGACTTATCAGCGG
TGGCAAAACAGAGGCAGACATTCCGACAAGTGAAGCAAAAGACGAAGTAA
ACAATGTTTTCGTGACGTGCGATAAATTATTTCATGAAGAATTACACGAA
GCTGGTAACAAAGACCATGTATCCAACACTAACATCCGTGACTCTTATTT
TGACGTTCCTGATACGTACTACACCATAAACCGGAGTGGTTCTAATACCA
ATTATAAGCAACAGATAATCACTGGGTCGGAACCCGTTCGTGAGCAATGG
TTACCATTCCACGATGGGAATCCTGTAAGCGTTGAAGGACAACTTGATGT
GGAGTTTGCTTTGGCTGATCAAGAAAGATTAAGAAAAGAATACAGATATC
GAATGATTAGAGGTTTGTCCAGCAAACGTTATTCATTGTGCAGTCAATTG
GAATAGGGCTCCTTTGTACTCCAAGATTTTCAAACAATGTCCTATGGTGT
ACTGTTCCAACCAATGTGGTGTGCAATACCACCAATGTAAAGAGAAAGAG
CATGTTCATGTGTGCAGGGAGCAGATTCGCCCATGTGTCAATAAGCTTTA
CGGATGTCCATTTGAAGTGACCAGTGTTGAACTACTTACTCATTTAGAGG
AAAACATGACAACACAAATAAGCAATAAAACATCTGAAAAAGAAGGAGAG
ATCCACCTACATTGTCTTTCCTGTTATTCTTCATCATGTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007436XLOC_007436Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013301-proteinTCONS_00013301-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013301-exon-sc0000164-1575043694:314070..314164TCONS_00013301-exon-sc0000164-1575043694:314070..314164Clytia hemisphaericaexon
TCONS_00013301-exon-sc0000164-1575043694:313042..313215TCONS_00013301-exon-sc0000164-1575043694:313042..313215Clytia hemisphaericaexon
TCONS_00013301-exon-sc0000164-1575043694:311968..312030TCONS_00013301-exon-sc0000164-1575043694:311968..312030Clytia hemisphaericaexon
TCONS_00013301-exon-sc0000164-1575043694:311375..311501TCONS_00013301-exon-sc0000164-1575043694:311375..311501Clytia hemisphaericaexon
TCONS_00013301-exon-sc0000164-1575043694:310790..311109TCONS_00013301-exon-sc0000164-1575043694:310790..311109Clytia hemisphaericaexon
TCONS_00013301-exon-sc0000164-1575043694:310161..310266TCONS_00013301-exon-sc0000164-1575043694:310161..310266Clytia hemisphaericaexon
TCONS_00013301-exon-sc0000164-1510915933:314070..314164TCONS_00013301-exon-sc0000164-1510915933:314070..314164Clytia hemisphaericaexon
TCONS_00013301-exon-sc0000164-1510915933:313042..313215TCONS_00013301-exon-sc0000164-1510915933:313042..313215Clytia hemisphaericaexon
TCONS_00013301-exon-sc0000164-1510915933:311968..312030TCONS_00013301-exon-sc0000164-1510915933:311968..312030Clytia hemisphaericaexon
TCONS_00013301-exon-sc0000164-1510915933:311375..311501TCONS_00013301-exon-sc0000164-1510915933:311375..311501Clytia hemisphaericaexon
TCONS_00013301-exon-sc0000164-1510915933:310790..311109TCONS_00013301-exon-sc0000164-1510915933:310790..311109Clytia hemisphaericaexon
TCONS_00013301-exon-sc0000164-1510915933:310161..310266TCONS_00013301-exon-sc0000164-1510915933:310161..310266Clytia hemisphaericaexon
TCONS_00013301-exon-sc0000164-1491911889:314070..314164TCONS_00013301-exon-sc0000164-1491911889:314070..314164Clytia hemisphaericaexon
TCONS_00013301-exon-sc0000164-1491911889:313042..313215TCONS_00013301-exon-sc0000164-1491911889:313042..313215Clytia hemisphaericaexon
TCONS_00013301-exon-sc0000164-1491911889:311968..312030TCONS_00013301-exon-sc0000164-1491911889:311968..312030Clytia hemisphaericaexon
TCONS_00013301-exon-sc0000164-1491911889:311375..311501TCONS_00013301-exon-sc0000164-1491911889:311375..311501Clytia hemisphaericaexon
TCONS_00013301-exon-sc0000164-1491911889:310790..311109TCONS_00013301-exon-sc0000164-1491911889:310790..311109Clytia hemisphaericaexon
TCONS_00013301-exon-sc0000164-1491911889:310161..310266TCONS_00013301-exon-sc0000164-1491911889:310161..310266Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000164supercontigsc0000164:310161..314164 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.61679	4.02211	2.83972	2.47318	5.09836	4.90079	1.57953	1.48966	0.853525	1.93547	0.140906	1.43415	2.55924	1.64952	1.59523	1.95675	2.52349	2.22747	1.19648	4.3537	1.86742	3.21365	3.97959	4.07507	0.665616	2.61098	0.948328	0.550399	3.06803	2.83048
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001293Znf_TRAF
IPR013083Znf_RING/FYVE/PHD
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00013301 vs. Swiss-Prot (Human)
Match: FBX30 (F-box only protein 30 OS=Homo sapiens GN=FBXO30 PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 4.120e-17
Identity = 42/136 (30.88%), Postives = 67/136 (49.26%), Query Frame = 3 
Query:  108 CPMVYCSNQCGVQYHQCKEKEHVHVCREQIRPCVNKLYGCPFEVTSVELLTHLEVCPANVIHCAVNWNRAPLYSKVREQWLPFHDGNPVSVEGQLDVEFALADQERLRKEYRYRMIRGARKRSSLNKKVGRIEKTR 515
            C ++ C   CG  +H CK  EH  +C  +  PC+N  +GCPF +   ++  HLE+CPA+V+ C + WNR P+    R+ +        V    QLD+  AL DQ  L +  +   +        ++K   ++ K R
Sbjct:   28 CDLIGCPLVCGAVFHSCKADEHRLLCPFERVPCLNSDFGCPFTMARNKVAEHLEMCPASVVCCTMEWNRWPVSYADRKSYENL--SRDVDEVAQLDMALALQDQRMLLESLKVATM--------MSKATDKVSKPR 153
The following BLAST results are available for this feature:
BLAST of TCONS_00013301 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FBX304.120e-1730.88F-box only protein 30 OS=Homo sapiens GN=FBXO30 PE... [more]
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