TCONS_00013301-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00013301-protein
Unique NameTCONS_00013301-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length294

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00013301-protein ID=TCONS_00013301-protein|Name=TCONS_00013301-protein|organism=Clytia hemisphaerica|type=polypeptide|length=294bp
ENMTTQISNKTSEKEGEIHLHCLSCYSSSCHIFKQCPMVYCSNQCGVQYH
QCKEKEHVHVCREQIRPCVNKLYGCPFEVTSVELLTHLEVCPANVIHCAV
NWNRAPLYSKVREQWLPFHDGNPVSVEGQLDVEFALADQERLRKEYRYRM
IRGARKRSSLNKKVGRIEKTRIKDLERLISGGKTEADIPTSEAKDEVNNV
FVTCDKLFHEELHEAGNKDHVSNTNIRDSYFDVPDTYYTINRSGSNTNYK
QQIITGSEPTCVAASLIVPDWLSSFGVRRRMRNVDPARGKRIKR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007436XLOC_007436Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00013301TCONS_00013301Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001293Znf_TRAF
IPR013083Znf_RING/FYVE/PHD
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001293Zinc finger, TRAF-typePFAMPF15965zf-TRAF_2coord: 19..106
e-value: 3.6E-25
score: 88.2
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 77..107
e-value: 3.7E-4
score: 20.1
coord: 30..76
e-value: 1.8E-4
score: 21.1
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 38..100

Blast
[Close]
BLAST of TCONS_00013301-protein vs. Swiss-Prot (Human)
Match: FBX40 (F-box only protein 40 OS=Homo sapiens GN=FBXO40 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.823e-19
Identity = 48/133 (36.09%), Postives = 69/133 (51.88%), Query Frame = 0 
Query:   19 HLHCLSCYSSSCHIFKQ----CPMVYCSNQCGVQYHQCKEKEHVHVCREQIRPCVNKLYGCPFEVTSVELLTHLEVCPANVIHCAVNWNRAPLYSKVREQWLPFHDGNPVSVEGQLDVEFALADQERLRKEYR 147
            H HC  C++  CHI  +    C ++ C   CG  +H CKE EH  +C  +  PC+N  YGCP  ++  +L  HL+VCPA+V+ C++ WNR P      E  L  +       E  LD   AL DQ+ L +  +
Sbjct:   12 HRHCEGCFNRHCHIPVEPNTSCLVISCHLLCGATFHMCKEAEHQLLCPLEQVPCLNSEYGCPLSMSRHKLAKHLQVCPASVVCCSMEWNRWPNVDS--ETTLHENIMKETPSEECLDTALALQDQKVLFRSLK 142
The following BLAST results are available for this feature:
BLAST of TCONS_00013301-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FBX401.823e-1936.09F-box only protein 40 OS=Homo sapiens GN=FBXO40 PE... [more]
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