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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013207 ID=TCONS_00013207|Name=TCONS_00013207|organism=Clytia hemisphaerica|type=transcript|length=1814bpRun BLAST on NCBI protein sequence of TCONS_00013207-protein >TCONS_00013207-protein ID=TCONS_00013207-protein|Name=TCONS_00013207-protein|organism=Clytia hemisphaerica|type=polypeptide|length=485bp MDLGFDGAIHTFQKKIGTYDKANWEIIVEKQSIPQIDKTSSDAKLPTDLLRun BLAST on NCBI transcript from alignment at sc0000163:369171..381575+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013207 ID=TCONS_00013207|Name=TCONS_00013207|organism=Clytia hemisphaerica|type=transcript|length=12405bp|location=Sequence derived from alignment at sc0000163:369171..381575+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000163:369171..381575+ >TCONS_00013207 ID=TCONS_00013207|Name=TCONS_00013207|organism=Clytia hemisphaerica|type=CDS|length=17460bp|location=Sequence derived from alignment at sc0000163:369171..381575+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00013207 vs. Swiss-Prot (Human)
Match: PHTF1 (Putative homeodomain transcription factor 1 OS=Homo sapiens GN=PHTF1 PE=2 SV=2) HSP 1 Score: 111.694 bits (278), Expect = 1.437e-25 Identity = 61/186 (32.80%), Postives = 106/186 (56.99%), Query Frame = 3
Query: 381 AIHTFQKKIGTYDKANWEIIVEKQSIPQI-DKTSSDAKLPTDLLDVDLLRGSSFTKSKPGYHWTQVTTSGLLKIILFPIYYSWWKSQITQ---WVWMFMSLYFLQLFGLVIYFVYQADESLVDITWPEAFVPIMALILVGELYIHVVSSNFTKPMAHKIKKTNKKRSHDTKRPGRGKDRKKSSKNV 926
AI +QKKIG YD+ WE +E+ I + +K + DL+DVDL+RGS+F K+KP WT +T GL++++ FP++ +WW Q+T +VW+ + LYF+Q+ +V+Y + +V+I+ E P+ ++L+G ++ +VS+ T+P + + +K G ++ SS V
Sbjct: 8 AISWYQKKIGAYDQQIWEKSIEQTQIKGLKNKPKKMGHIKPDLIDVDLIRGSTFAKAKPEIPWTSLTRKGLVRVVFFPLFSNWW-IQVTSLRIFVWLLL-LYFMQVIAIVLYLMM----PIVNIS--EVLGPLCLMLLMGTVHCQIVSTQITRPSGNNGNRRRRKLRKTVNGDGSRENGNNSSDKV 185 The following BLAST results are available for this feature:
BLAST of TCONS_00013207 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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