TCONS_00013207-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00013207-protein
Unique NameTCONS_00013207-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length485

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00013207-protein ID=TCONS_00013207-protein|Name=TCONS_00013207-protein|organism=Clytia hemisphaerica|type=polypeptide|length=485bp
MDLGFDGAIHTFQKKIGTYDKANWEIIVEKQSIPQIDKTSSDAKLPTDLL
DVDLLRGSSFTKSKPGYHWTQVTTSGLLKIILFPIYYSWWKSQITQWVWM
FMSLYFLQLFGLVIYFVYQADESLVDITWPEAFVPIMALILVGELYIHVV
SSNFTKPMAHKIKKTNKKRSHDTKRPGRGKDRKKSSKNVTIKRNADTISD
EGIESYDGRRPNDTSPERHSSRAESVERKLESDDENSILCKASHPERCLQ
GASNSLGYEVRKRIVTSKSIDSNEDIETHQPTENVEKITSPPTKSSQRSS
PNKRQNFNQSTSISATADESSSSDESTDSSGSSSTLSENEEQMTEMVELF
RSPLSLNNATPSDNKLVHAVPSAMTRPGSSDKITVSIWSGNSFKKLKLTF
YEIGLEVVNQVEIRMNHTGSDYVKFSLMSAFLIGMLPMLFRVYKSQVGKH
ADITCTKAASELYRQVQTWDGMVSIFLQLVGPTIQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007386XLOC_007386Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00013207TCONS_00013207Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021980TF_homeodomain_male
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021980Transcription factor homeodomain, male germ-cellPFAMPF12129Phtf-FEM1B_bdgcoord: 7..154
e-value: 4.7E-38
score: 130.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 160..237
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 271..344

Blast
[Close]
BLAST of TCONS_00013207-protein vs. Swiss-Prot (Human)
Match: PHTF1 (Putative homeodomain transcription factor 1 OS=Homo sapiens GN=PHTF1 PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 7.260e-28
Identity = 121/509 (23.77%), Postives = 217/509 (42.63%), Query Frame = 0 
Query:    8 AIHTFQKKIGTYDKANWEIIVEKQSIPQI-DKTSSDAKLPTDLLDVDLLRGSSFTKSKPGYHWTQVTTSGLLKIILFPIYYSWWKSQITQ---WVWMFMSLYFLQLFGLVIYFVYQADESLVDITWPEAFVPIMALILVGELYIHVVSSNFTKPMAHKIKKTNKKRSHDTKRPGRGKDRKKSSKNV----------------------TIKRNADTISDEGIESYDGRRPNDTSP--ERHSSRAE-----SVERKLESDDENSILCKASHPERCLQGASNSLGYE----------VRKRIVTSKSIDSNEDIETHQP------TENVEKITSPPTKSSQRSSPNKRQNFNQSTSISATADESSSSDESTDSSGSSSTLSENEEQMTEMV--ELFRSPLSLNNATP-SDNKLVHAVPSAMTR------------------PGSSDKITVSIWSGNSFKKLKLTFYEIGLEVVNQVEIRMNHTGSDYVKFSLMSAFLIGMLPMLFRVYKSQ 446
            AI  +QKKIG YD+  WE  +E+  I  + +K      +  DL+DVDL+RGS+F K+KP   WT +T  GL++++ FP++ +WW  Q+T    +VW+ + LYF+Q+  +V+Y +      +V+I+  E   P+  ++L+G ++  +VS+  T+P  +   +  +K        G  ++   SS  V                       IKR    IS++G E+ +   P+   P  +R   R E     + E+   SD E    C+     R   G S+ L  E          + +R V   S D+  +++  +          V+K T+      + S       F  +     +    S    S + S   S  + ++ +  +M+  +L   P   ++ T  S+   V+ + S   R                    SSD+++  IW GN  KK+ ++  EI   ++++V       G  Y     +    +   P L R+++ +
Sbjct:    8 AISWYQKKIGAYDQQIWEKSIEQTQIKGLKNKPKKMGHIKPDLIDVDLIRGSTFAKAKPEIPWTSLTRKGLVRVVFFPLFSNWW-IQVTSLRIFVWLLL-LYFMQVIAIVLYLMM----PIVNIS--EVLGPLCLMLLMGTVHCQIVSTQITRPSGNNGNRRRRKLRKTVNGDGSRENGNNSSDKVRGIETLESVPIIGGFWETIFGNRIKR-VKLISNKGTETDND--PSCVHPIIKRRQCRPEIRMWQTREKAKFSDGEK---CRREAFRRLGNGVSDDLSSEEDGEARTQMILLRRSVEGASSDNGCEVKNRKSILSRHLNSQVKKTTTRWCHIVRDSDSLAESEFESAAFSQGSRSGVSGGSRSLNMSRRDSESTRHDSETEDMLWDDLLHGPECRSSVTSDSEGAHVNTLHSGTKRDPKEDVFQQNHLFWLQNSSPSSDRVSAIIWEGNECKKMDMSVLEISGIIMSRVN--AYQQGVGYQMLGNVVTIGLAFFPFLHRLFREK 500
The following BLAST results are available for this feature:
BLAST of TCONS_00013207-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PHTF17.260e-2823.77Putative homeodomain transcription factor 1 OS=Hom... [more]
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