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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013174 ID=TCONS_00013174|Name=TCONS_00013174|organism=Clytia hemisphaerica|type=transcript|length=6951bpRun BLAST on NCBI protein sequence of TCONS_00013174-protein >TCONS_00013174-protein ID=TCONS_00013174-protein|Name=TCONS_00013174-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1232bp MSKQMKGKFKSMFGKKPSGAPFDKESCKSIITREILKDIDRSQPILQRIRRun BLAST on NCBI transcript from alignment at sc0000162:472705..498461- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013174 ID=TCONS_00013174|Name=TCONS_00013174|organism=Clytia hemisphaerica|type=transcript|length=25757bp|location=Sequence derived from alignment at sc0000162:472705..498461- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000162:472705..498461- >TCONS_00013174 ID=TCONS_00013174|Name=TCONS_00013174|organism=Clytia hemisphaerica|type=CDS|length=62883bp|location=Sequence derived from alignment at sc0000162:472705..498461- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013174 vs. Swiss-Prot (Human)
Match: TSC2 (Tuberin OS=Homo sapiens GN=TSC2 PE=1 SV=2) HSP 1 Score: 560.836 bits (1444), Expect = 2.117e-165 Identity = 320/923 (34.67%), Postives = 512/923 (55.47%), Query Frame = 3
Query: 138 IITREILKDIDRSQPILQRIRNLKELSEVVTVKVMEEHEIEALLFTVNDLLDKSISGDGRQAALQFLIAITNGQNERLGILRSHIFRVIVEHDVQEDLQFRIALLKVLTDDGKKLDYCEQ-IGPFLDGLMEEALDSPNAVAFLEYLVKIVHYHSSFLDKSIVCSIVSKTCDFCNNANGEQDIESSLLLLDATVRYGGLPAEGLLPLIETLCRTVNIERFCQSSWKLMRNLIGTKLGHTAVFIMCQILEDNHHILDVILLRGAVFFIGMSIWGSKRVASLRYSPLHVLSSFKVCLQCNHHLVAXPLHVLSSFKVCLQCNHHLVAHEVVLSLQRLVKKFGEEQEIITWDILMDIVENILHMIDRGDADKTSILFKQTHELLTNTEALYVEEKFYGSAERFFKILTNCAKDRPEESISTILGYYEDRIDPNTVEWSDIFEQILITNLKQETRSGVKVRVLETIKNIYSRYRHRHEDDILSYILHGHVSDMVYDNDKDIRKSVGYLLSYILKHCCADKYPEVLKVVAEFLSYISLG-------KDVTRFNV-MEDISIVVDALINTFESRLFEPSNIYIVGMLEILIKHLNDHFTINITSIAAGKIRRKIFELLLALRSNEYHFLGIKLKENGVKFSTHAIFKPLDSEIFN-NSASRPY-----------------FVDFDFQQAFEGLLKCLKNELDWNVLELVLKSIVKQLEDKNLYVYCQCNMNKLCAVLCTIINDKTFFNKMKNVPTTMTMSELRNLIFPILSTLSTYHSYLVKDRQVELLTSIEFGLQTRSALTCVSCLTVCVLEMQGIMKRILPSMLVKLSQIASSEMMSNAILKFLSTLKEIPSLYSNFVEEQYMSIFAMALPYTDCLKYTRYIVTLAHQVIADWFTRCKLMFRKDFVSIIVAALKSH-------TTEKD 2804
IIT EIL+++ + RIR + ++ EV K EEH +EAL V DLL + R A L L AI GQ ERLG+LR+ F+VI ++ EDL R+ + K LTD+G+ + Y E+ + F+ M+ L S FL LV +V ++S +LD+ I +V C C DIE SL +LDA V Y LPAE L I TLCRT+N++ C+ WKLMRNL+GT LGH+A++ MC ++ED ++ D LLRGAVFF+GM++WG+ R+ SLR SP VL SF + C + +V++E+VLS+ RL+KK+ +E +++ WDIL++I+E +L + D+ + + H+LLT E L + +F+GS ER+F+++ CA RPE S+ ++ Y I P W + ++ + E+R V+++VL+ + + R +E+++++ ++ +S + D D +RK LL + + C + +L ++ + ++ SL +DV ++ +ED+ V L+ +++L+ + + E+L+ H+ H+ + T A IR + F+ LL LR++ H LG+ K+ V+FS + + ++ E + S P + F LL+CLK E DW VL+LVL + + L K L C++++LC+ LC++++ +++ P + ++L + P+L+ L +YH+YL K +Q E++ +E GL R A CV L++C +EM I+ + LP ++VKL+ I+++ M+ +L+FLSTL +P LY NF EQY S+FA++LPYT+ K+ +YIV LAH VIA WF RC+L FRKDFV I L+S+ T EKD
Sbjct: 39 IITAEILRELSMECGLNNRIRMIGQICEVAKTKKFEEHAVEALWKAVADLLQPERPLEARHAVLALLKAIVQGQGERLGVLRALFFKVIKDYPSNEDLHERLEVFKALTDNGRHITYLEEELADFVLQWMDVGLSS----EFLLVLVNLVKFNSCYLDEYIA-RMVQMICLLCVRTASSVDIEVSLQVLDAVVCYNCLPAESLPLFIVTLCRTINVKELCEPCWKLMRNLLGTHLGHSAIYNMCHLMEDRAYMEDAPLLRGAVFFVGMALWGAHRLYSLRNSP---------------------TSVLPSFYQAMACPNEVVSYEIVLSITRLIKKYRKELQVVAWDILLNIIERLLQQLQTLDSPELRTI---VHDLLTTVEELCDQNEFHGSQERYFELVERCADQRPESSLLNLISYRAQSIHPAKDGWIQNLQALMERFFRSESRGAVRIKVLDVLSFVLLINRQFYEEELINSVVISQLSHIPEDKDHQVRKLATQLLVDLAEGCHTHHFNSLLDIIEKVMAR-SLSPPPELEERDVAAYSASLEDVKTAVLGLLVILQTKLYTLPASHATRVYEMLVSHIQLHYKHSYTLPIASSIRLQAFDFLLLLRADSLHRLGLPNKDGVVRFSPYCVCDYMEPERGSEKKTSGPLSPPTGPPGPAPAGPAVRLGSVPYSLLFRVLLQCLKQESDWKVLKLVLGRLPESLRYKVLIFTSPCSVDQLCSALCSMLSGPKTLERLRGAPEGFSRTDLHLAVVPVLTALISYHNYLDKTKQREMVYCLEQGLIHRCASQCVVALSICSVEMPDIIIKALPVLVVKLTHISATASMAVPLLEFLSTLARLPHLYRNFAAEQYASVFAISLPYTNPSKFNQYIVCLAHHVIAMWFIRCRLPFRKDFVPFITKGLRSNVLLSFDDTPEKD 931 HSP 2 Score: 255.758 bits (652), Expect = 4.515e-68 Identity = 127/293 (43.34%), Postives = 189/293 (64.51%), Query Frame = 1
Query: 4042 VNKDSNDNKDSTQTKAENF--WSPNFVFLQLFYSSFGNVFENAPILL-DQTEAMQRTIKILHKIPAFNTHKFGVLYVGQGQENSEIDILENDFGSIRYTNFLVGLGEIISLSNSTED-YYTGGLS-PGEDGKFACVWKDDTTQVIFHVATLMPFKTTDTKCISKKRHIGNDFVTIIYDDSENGYSFGTIKGQFNYAEIVIRPVEYANNVVYVRLKQNSKIICLDS--QTISDSNLAILVRQMAIHTNMALVTEKGGEKTTNAFASNWLQRLRQIKRIRTKVDNEA---NKTLP 4890
V +D+ ++ +T + AE +P+FVFLQL++S F N PILL +++++ +R++++L +IP+++THK VLYVG+GQ NSE+ IL N+ GS RYT FL GLG +I L + D Y GGL GEDG+F W DD Q +FH+ATLMP K D KKRH+GNDFV+I+Y+DS + GTIKGQFN+ +++ P++Y N+V ++ +++ + + S + +SD NL + RQMA+H NMA T+ + S W+ RLR IKR+R ++ EA N +LP
Sbjct: 1475 VERDALKSR-ATASNAEKVPGINPSFVFLQLYHSPFFGDESNKPILLPNESQSFERSVQLLDQIPSYDTHKIAVLYVGEGQSNSELAILSNEHGSYRYTEFLTGLGRLIELKDCQPDKVYLGGLDVCGEDGQFTYCWHDDIMQAVFHIATLMPTKDVDKHRCDKKRHLGNDFVSIVYNDSGEDFKLGTIKGQFNFVHVIVTPLDYECNLVSLQCRKDMEGLVDTSVAKIVSDRNLPFVARQMALHANMASQVHHSRSNPTDIYPSKWIARLRHIKRLRQRICEEAAYSNPSLP 1766 The following BLAST results are available for this feature:
BLAST of TCONS_00013174 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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