TCONS_00012846 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012846
Unique NameTCONS_00012846
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2005

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012846 ID=TCONS_00012846|Name=TCONS_00012846|organism=Clytia hemisphaerica|type=transcript|length=2005bp
CCAACTGTTTTTAGCTTGCATATCTGAATACCTCCAACATATCATAACAA
TGGGTCAATCTCAATACAATCTATTGTTAATGGAAATCAAAAGACATATC
TGGGCAGTGTCATTTATTTAACTCATTTCTGGTCAGATTAGCAACTAGCT
AGGAGGTACTCTGCAAACAGAAATCAATCAGTTACACAGCATTCATCACA
AtggcaaaaatcagtgaagacGAACTCGACGACATTAAGGAGAGATACGA
ACTCTTCGATAAGAAAGGAGATGGAAAAATCGATGCAGCACAAATTATTG
ATGTTCTTCGTGCTTGTGGACAAAACCCACTCANGATCGATGCTGCACAA
ATTATTGATGTTCTTCGTGCTTGTGGACAAAACCCACTCAAACCCGATGT
CGATAAGATCATCAAAGAATCTGAATTAGACGGCAAACGTGTTGAATTAG
AAGTTTTCTGTGGTATTTACGAACAAATCTCGAAAGCACCTGGACAAGCT
TGTTTTGAAGATATGGTTGAAGCTTTCAAAACATACGACAAAGAATCAAA
CGGTTCTATTTCATCGGCACAAATTCGTCAACTTCTGATCAACTTGGGAG
ATACGTTGACTGAACAAGAAGCTGATATCATCCTAGCGCCACATGAAGAT
GACCAGAGCAATATCAGTTATCAACAACTCATCAAATCTCTTGTTggaga
aaagaaataaatagaTTTTTCTCTTTAGATTTATCTCCGCCAATAATCGC
CCACTCTCAGATATCTACGCCCACTTGATTCCCTTTATAATTTTTGTTCA
CAATATTGTATAAAATTATGACCTCTTTTGTACCATATTATTTATTTCAg
agttttttgttcttttatttttcactttttttaaaaatgggaAAATATGA
CAATTGACTGACTTTACGACAATATAATGACGACTGTTTTTTAACAGCAG
CTCTTTTCCCTTGAATGGACCAACTTCAGCACCAGGACTCCCTTATCTAC
TTAATAATATTCTGCTCGAAAAGGTCCTGGGTACTAAATTGGCTTAATGA
AGGTTAAGAGCATACATGACTGTGGactggttttgattttttttggtgct
ggattttttgtttgtttatatttttagttAAGAAGCAAAAGATTCCCCAT
GAGTCTGTTTGAAGTTTTTCTACTCTTTGTAATTGGTGGGAAATAACAAC
AAACTAAATGACTTTCTGGGATCTGTTGTGAGAAGCTTTTGTACACGTTT
TCGAATAACGTCAAAAGCaaattttagaacatttttttgttgattatagg
aattatttttcattccatttttataattcctataattttttttgcaaact
tttcagaaattgtaaattgttaaattcaagttttacggaaataattgata
atacaaataaaagggaccaaataaaaaaattgagaacttTTTGCATACca
tatttattttctaattaaGTTTGACTTAAGTCTAAGAAGTNTTAATGACG
ACTGTTTTTTAACAGCAGCTCTTTTCCCTTGAATGGACCAACTTCAGCAC
CAGGACTCCCTTATCTACTTAATAATATTCTGCTAGAAAAGGTCCTGGGT
ACTAAATTGGCTTATTGAAGGTTAAGAGCATACATGACTGTGGactggtt
ttgattttttttggtgctggattttttgtttgtttatatttttagttAAG
AAGCAAAAGATTCCCCATGAGTCTGTTTGAAGTTTTTCTACTCCTTGTAA
TTGGTGGGAAATAACAACAAACTAAATGACTTTCTGGGATCTGTTGTGAG
AAGCTTTTGTACACGTTTTCGAATAACGTCAAAAGCaaattttagaacat
ttttttgttgattataggaattatttttcattccatttttataattccta
taattttttttgcaaacttttcagaaattgtaaattgttaaattcaagtt
ttacggaaataattgataatacaaataaaagggaccaaataaaaaaattg
agaac
Run BLAST on NCBI

protein sequence of TCONS_00012846-protein

>TCONS_00012846-protein ID=TCONS_00012846-protein|Name=TCONS_00012846-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
MAKISEDELDDIKERYELFDKKGDGKIDAAQIIDVLRACGQNPLXIDAAQ
IIDVLRACGQNPLKPDVDKIIKESELDGKRVELEVFCGIYEQISKAPGQA
CFEDMVEAFKTYDKESNGSISSAQIRQLLINLGDTLTEQEADIILAPHED
DQSNISYQQLIKSLVGEKK
Run BLAST on NCBI

transcript from alignment at sc0000156:364960..369397-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012846 ID=TCONS_00012846|Name=TCONS_00012846|organism=Clytia hemisphaerica|type=transcript|length=4438bp|location=Sequence derived from alignment at sc0000156:364960..369397- (Clytia hemisphaerica)
CCAACTGTTTTTAGCTTGCATATCTGGTAAGTACCTGTCCATTGATTATA
TATGATAAGAAAGACACTGCAACATCATTTAACTTTACTTTAACCATCTA
AATAGTTTAGGCAATTTAAAAGTACTAAATCAAAGGTATTAACTTTTAGG
CTGATCAGAATTTTTATAAATACCTTTAAAAGATATTCGTTTGTTGTTTC
TTAAAGTCGACTCTTTGTTTGTTCAATTTTAGTCCATTTGCAATTTGGTT
CTAAAAAGTTCCAAGGAAGTAATTTATCATATAGGTCAAAATTTATTTAA
CACGATCAAACAAAAAAATTCATTAAAGGGAATAGCGCTATACTTATAGT
AGGGGTCGGAGTTGCTGGTAGTTCCATGGTATACTTTGAAATACATGCTG
ATGTCAGCCCGAAAGCTGATTGGCTTAACCGACAGTTATACGTGGTTTGA
GAGTATAGCTAAAACTTTGTTATGNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNACTTTTGGTTTTTGTTATGATCC
AGCACTCCTAAATACTCCTCCGTATGGGTGTTTGTGCCAATGCTAGATCA
GCATTTCATAAATATACCATGCGTCGTTCCCTTTAAGCAAATAAAAACCA
CTCTTTTATCTTTAATCTCCTGATGATGACATGATTGAATTTCTTATTTA
GAATACCTCCAACATATCATAACAATGGGTCAATCTCAATACAATCTATT
GTTAATGGAAATCAAAAGACATATCTGGGCAGTGTCATTTATTTAACTCA
TTTCTGGTCAGATTAGCAACTAGCTAGGAGGTACTCTGCAAACAGAAATC
AATCAGTTACACAGGTTAGCTATATTTTATTTTTGATACACCAACATCTG
TTTACTATTTCTGTTTACTGCTTTCTCATATATCTCTGAAAACTTGCTTA
TTCATTAAGATGTTGATTATGCTCAACTCCTGTGTTGTCTTCTCCTTGAT
CTTTTTAATAATTTTCTTTATTCTGATGCCACCTGTTTGTATTGCACAAA
TGTTTGTTTCTGGTACATCATGATTTTGAATTTAGTATTGGTGGTTTTAT
AATGAACTTGCATACATCTTTTCTGTGCCAGTTTTATTTTATTTTGAAAA
TTCAATCTCTTTCTAGAAAACATCTGTGCATTAGATCTTCTAAGTTTTTC
TGGTATTTGGTGCAAACACAACCCTGAGCTTTTCACTGATAGCTCCTTAA
ATTTCTCCTTGATTAAAAGTTTCGAAGAGTCTGAACTTCATATAGGAACT
AACCCTTTGTGAATTATCATAGCACAGGTGCCACCCCCCCCCCCNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNGGGTACTAGGGTTGATGAATGAGGGGTATG
TGCAGACGGGACCTCCGAAAACTGACCCTTAGAGAGACTGATTTTTGCTG
AAAAAGTGACCCTTAGATAGACTTTTTGAATTTTTTTTTCGATTTTTTCG
AAAAAAGTCATACCCTTAGAGAGACAATATTACAATTTTTTCTCTGGAAA
TCAAAAAGTTTCCTAAAAATCCTGAATTTTCCGACCCTTAAAGAGAGTAA
TTTAAAACTTTCTGATTTTTCCGACCCTTAGAGAGACTTTGAAAGGTGAA
AAAACCGACCCTTACCCTTACACATACCCATCATCCATTTTTGTCTAAGT
GCCCCCCTTCCCCCCGGGTTTTACCCTCTTAGTACTTGCATGGGACTTTC
AAATCTTTGATAAAATGAGATTTTTTTTACATTTCTTAGATTTCTTCCCT
GACTTTCATGGAATAAAACTAGAGTTGTCTCTTTCTCTCTCTCTCTAATT
CGATCTTCATGGGACGGAAAGATTTCTTCGAATAAGAGAAACATTTGAAT
ATAGAGGGTGATTTAAAATGTTTTACTTCGAATTACAGAAAGATTCGAAT
GATAGAGGTTCGAATTAGAGAGAGTTGACTAGGCTGTATCACAAACTCCT
TATTCTCTTATCATAGCATTCATCACAATGGCAAAAATCAGTGAAGACGA
ACTCGACGACATTAAGGAGAGATACGAACTCTTCGATAAGAAAGGAGATG
GAAAAATCGATGCAGCACAAATTATTGATGTTCTTCGTGCTTGTGGACAA
AACCCACTCANGATCGATGCTGCACAAATTATTGATGTTCTTCGTGCTTG
TGGACAAAACCCACTCAAACCCGATGTCGATAAGGTATAATTTCTTCATT
TATCAAGTAGTATGCATTCATTGAGTATTATCCAATATATATTTCGTTTG
TCTATAACGTTCTATTCAAGTTTCTCAAATCCTCTGTTTTATGATTTACA
TTTTACTAGTTGTAGTTGTCTAATAAGGACATCTTGAGGTTATTTTCATG
TATACGTAAATGTTAATTTTTTCAATTTTTTATATTCCAGATCATCAAAG
AATCTGAATTAGACGGCAAACGTGTTGAATTAGAAGTTTTCTGTGGTATT
TACGAACAAATCTCGAAAGCACCTGGACAAGCTTGTTTTGAAGATATGGT
TGAAGCTTTCAAAACATACGACAAAGAATCAAACGGTTCTATTTCATCGG
CACAAATTCGTCAACTTCTGATCAACTTGGGAGATACGTTGACTGAACAA
GAAGCTGATATCATCCTAGCGCCACATGAAGATGACCAGAGCAATATCAG
TTATCAACAACTCATCAAATCTCTTGTTGGAGAAAAGAAATAAATAGATT
TTTCTCTTTAGATTTATCTCCGCCAATAATCGCCCACTCTCAGATATCTA
CGCCCACTTGATTCCCTTTATAATTTTTGTTCACAATATTGTATAAAATT
ATGACCTCTTTTGTACCATATTATTTATTTCAGAGTTTTTTGTTCTTTTA
TTTTTCACTTTTTTTAAAAATGGGAAAATATGACAATTGACTGACTTTAC
GACAATATAATGACGACTGTTTTTTAACAGCAGCTCTTTTCCCTTGAATG
GACCAACTTCAGCACCAGGACTCCCTTATCTACTTAATAATATTCTGCTC
GAAAAGGTCCTGGGTACTAAATTGGCTTAATGAAGGTTAAGAGCATACAT
GACTGTGGACTGGTTTTGATTTTTTTTGGTGCTGGATTTTTTGTTTGTTT
ATATTTTTAGTTAAGAAGCAAAAGATTCCCCATGAGTCTGTTTGAAGTTT
TTCTACTCTTTGTAATTGGTGGGAAATAACAACAAACTAAATGACTTTCT
GGGATCTGTTGTGAGAAGCTTTTGTACACGTTTTCGAATAACGTCAAAAG
CAAATTTTAGAACATTTTTTTGTTGATTATAGGAATTATTTTTCATTCCA
TTTTTATAATTCCTATAATTTTTTTTGCAAACTTTTCAGAAATTGTAAAT
TGTTAAATTCAAGTTTTACGGAAATAATTGATAATACAAATAAAAGGGAC
CAAATAAAAAAATTGAGAACTTTTTGCATACCATATTTATTTTCTAATTA
AGTTTGACTTAAGTCTAAGAAGTNTTAATGACGACTGTTTTTTAACAGCA
GCTCTTTTCCCTTGAATGGACCAACTTCAGCACCAGGACTCCCTTATCTA
CTTAATAATATTCTGCTAGAAAAGGTCCTGGGTACTAAATTGGCTTATTG
AAGGTTAAGAGCATACATGACTGTGGACTGGTTTTGATTTTTTTTGGTGC
TGGATTTTTTGTTTGTTTATATTTTTAGTTAAGAAGCAAAAGATTCCCCA
TGAGTCTGTTTGAAGTTTTTCTACTCCTTGTAATTGGTGGGAAATAACAA
CAAACTAAATGACTTTCTGGGATCTGTTGTGAGAAGCTTTTGTACACGTT
TTCGAATAACGTCAAAAGCAAATTTTAGAACATTTTTTTGTTGATTATAG
GAATTATTTTTCATTCCATTTTTATAATTCCTATAATTTTTTTTGCAAAC
TTTTCAGAAATTGTAAATTGTTAAATTCAAGTTTTACGGAAATAATTGAT
AATACAAATAAAAGGGACCAAATAAAAAAATTGAGAAC

Coding sequence (CDS) from alignment at sc0000156:364960..369397-

>TCONS_00012846 ID=TCONS_00012846|Name=TCONS_00012846|organism=Clytia hemisphaerica|type=CDS|length=1020bp|location=Sequence derived from alignment at sc0000156:364960..369397- (Clytia hemisphaerica)
ATCATCAAAGAATCTGAATTAGACGGCAAACGTGTTGAATTAGAAGTTTT
CTGTGGTATTTACGAACAAATCTCGAAAGCACCTGGACAAGCTTGTTTTG
AAGATATGGTTGAAGCTTTCAAAACATACGACAAAGAATCAAACGGTTCT
ATTTCATCGGCACAAATTCGTCAACTTCTGATCAACTTGGGAGATACGTT
GACTGAACAAGAAGCTGATATCATCCTAGCGCCACATGAAGATGACCAGA
GCAATATCAGTTATCAACAACTCATCAAATCTCTTGTTGGAGAAAAGAAA
TAAATGGCAAAAATCAGTGAAGACGAACTCGACGACATTAAGGAGAGATA
CGAACTCTTCGATAAGAAAGGAGATGGAAAAATCGATGCAGCACAAATTA
TTGATGTTCTTCGTGCTTGTGGACAAAACCCACTCANGATCGATGCTGCA
CAAATTATTGATGTTCTTCGTGCTTGTGGACAAAACCCACTCAAACCCGA
TGTCGATAAGATCATCAAAGAATCTGAATTAGACGGCAAACGTGTTGAAT
TAGAAGTTTTCTGTGGTATTTACGAACAAATCTCGAAAGCACCTGGACAA
GCTTGTTTTGAAGATATGGTTGAAGCTTTCAAAACATACGACAAAGAATC
AAACGGTTCTATTTCATCGGCACAAATTCGTCAACTTCTGATCAACTTGG
GAGATACGTTGACTGAACAAGAAGCTGATATCATCCTAGCGCCACATGAA
GATGACCAGAGCAATATCAGTTATCAACAACTCATCAAATCTCTTGTTGG
AGAAAAGAAATAAATGGCAAAAATCAGTGAAGACGAACTCGACGACATTA
AGGAGAGATACGAACTCTTCGATAAGAAAGGAGATGGAAAAATCGATGCA
GCACAAATTATTGATGTTCTTCGTGCTTGTGGACAAAACCCACTCANGAT
CGATGCTGCACAAATTATTGATGTTCTTCGTGCTTGTGGACAAAACCCAC
TCAAACCCGATGTCGATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007199XLOC_007199Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012846-proteinTCONS_00012846-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012846-exon-sc0000156-1575043694:369372..369397TCONS_00012846-exon-sc0000156-1575043694:369372..369397Clytia hemisphaericaexon
TCONS_00012846-exon-sc0000156-1575043694:368234..368396TCONS_00012846-exon-sc0000156-1575043694:368234..368396Clytia hemisphaericaexon
TCONS_00012846-exon-sc0000156-1575043694:366764..366981TCONS_00012846-exon-sc0000156-1575043694:366764..366981Clytia hemisphaericaexon
TCONS_00012846-exon-sc0000156-1575043694:364960..366557TCONS_00012846-exon-sc0000156-1575043694:364960..366557Clytia hemisphaericaexon
TCONS_00012846-exon-sc0000156-1510915933:369372..369397TCONS_00012846-exon-sc0000156-1510915933:369372..369397Clytia hemisphaericaexon
TCONS_00012846-exon-sc0000156-1510915933:368234..368396TCONS_00012846-exon-sc0000156-1510915933:368234..368396Clytia hemisphaericaexon
TCONS_00012846-exon-sc0000156-1510915933:366764..366981TCONS_00012846-exon-sc0000156-1510915933:366764..366981Clytia hemisphaericaexon
TCONS_00012846-exon-sc0000156-1510915933:364960..366557TCONS_00012846-exon-sc0000156-1510915933:364960..366557Clytia hemisphaericaexon
TCONS_00012846-exon-sc0000156-1491911889:369372..369397TCONS_00012846-exon-sc0000156-1491911889:369372..369397Clytia hemisphaericaexon
TCONS_00012846-exon-sc0000156-1491911889:368234..368396TCONS_00012846-exon-sc0000156-1491911889:368234..368396Clytia hemisphaericaexon
TCONS_00012846-exon-sc0000156-1491911889:366764..366981TCONS_00012846-exon-sc0000156-1491911889:366764..366981Clytia hemisphaericaexon
TCONS_00012846-exon-sc0000156-1491911889:364960..366557TCONS_00012846-exon-sc0000156-1491911889:364960..366557Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000156supercontigsc0000156:364960..369397 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.0433951	0	0	0	0	0	0.218006	68.998	90.5287	0	0	5.13932	9.72402	8.9909	11.8045	15.267	12.1507	5.02652	10.3057	51.4538	66.2961	2.02682	1.93316	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
[Close]
BLAST of TCONS_00012846 vs. Swiss-Prot (Human)
Match: MYL6B (Myosin light chain 6B OS=Homo sapiens GN=MYL6B PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.868e-31
Identity = 62/162 (38.27%), Postives = 98/162 (60.49%), Query Frame = 3 
Query:  210 ISEDELDDIKERYELFDKKGDGKIDAAQIIDVLRACGQNPLXIDAAQIIDVLRACGQNPLKPDVDKIIKESELDGKRVELEVFCGIYEQISKAPGQACFEDMVEAFKTYDKESNGSISSAQIRQLLINLGDTLTEQEADIILAPHEDDQSNISYQQLIKSLV 695
             ++D+L++ KE +ELFD+ GDGKI  +Q  DV+RA GQNP     A+++ VL     NP         K  EL  +RV+ E F  + + ++K  GQ  +ED +E F+ +DKE NG +  A++R +L  LG+ +TE+E + +LA HED    I+Y+  +K ++
Sbjct:   61 FNKDQLEEFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTN---AEVLKVL----GNP---------KSDELKSRRVDFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLAGHEDSNGCINYEAFLKHIL 206
The following BLAST results are available for this feature:
BLAST of TCONS_00012846 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MYL6B1.868e-3138.27Myosin light chain 6B OS=Homo sapiens GN=MYL6B PE=... [more]
back to top