TCONS_00012846-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012846-protein
Unique NameTCONS_00012846-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length169

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012846-protein ID=TCONS_00012846-protein|Name=TCONS_00012846-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
MAKISEDELDDIKERYELFDKKGDGKIDAAQIIDVLRACGQNPLXIDAAQ
IIDVLRACGQNPLKPDVDKIIKESELDGKRVELEVFCGIYEQISKAPGQA
CFEDMVEAFKTYDKESNGSISSAQIRQLLINLGDTLTEQEADIILAPHED
DQSNISYQQLIKSLVGEKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007199XLOC_007199Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012846TCONS_00012846Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 2..22
NoneNo IPR availableGENE3D1.10.238.10coord: 128..165
e-value: 6.1E-4
score: 19.1
NoneNo IPR availableGENE3D1.10.238.10coord: 45..92
e-value: 0.0019
score: 17.7
NoneNo IPR availableGENE3D1.10.238.10coord: 93..127
e-value: 5.9E-8
score: 32.0
coord: 1..44
e-value: 1.5E-9
score: 37.1
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 100..135
score: 9.966
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 7..42
score: 13.202
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 4..164

Blast
[Close]
BLAST of TCONS_00012846-protein vs. Swiss-Prot (Human)
Match: MYL6B (Myosin light chain 6B OS=Homo sapiens GN=MYL6B PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.172e-35
Identity = 62/162 (38.27%), Postives = 98/162 (60.49%), Query Frame = 0 
Query:    4 ISEDELDDIKERYELFDKKGDGKIDAAQIIDVLRACGQNPLXIDAAQIIDVLRACGQNPLKPDVDKIIKESELDGKRVELEVFCGIYEQISKAPGQACFEDMVEAFKTYDKESNGSISSAQIRQLLINLGDTLTEQEADIILAPHEDDQSNISYQQLIKSLV 165
             ++D+L++ KE +ELFD+ GDGKI  +Q  DV+RA GQNP     A+++ VL     NP         K  EL  +RV+ E F  + + ++K  GQ  +ED +E F+ +DKE NG +  A++R +L  LG+ +TE+E + +LA HED    I+Y+  +K ++
Sbjct:   61 FNKDQLEEFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTN---AEVLKVL----GNP---------KSDELKSRRVDFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLAGHEDSNGCINYEAFLKHIL 206
The following BLAST results are available for this feature:
BLAST of TCONS_00012846-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MYL6B1.172e-3538.27Myosin light chain 6B OS=Homo sapiens GN=MYL6B PE=... [more]
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