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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012725 ID=TCONS_00012725|Name=TCONS_00012725|organism=Clytia hemisphaerica|type=transcript|length=1136bp
CGTGGTTCAAAAAtactgttttgtttttaaaatcgaTGTCTAGTTTATTT
AAGATAGCGTAAATTTTATGGTGTCAGACTTGGCAAAAGTAAATCATGCT
AACTTTGATTCTCCTGGTCCTACAGTTGCATTCTCTAACCGGATATCCAC
TGAACAACGAGAGATCGTTTACAATTGATTATGAGCACAACACATTCTTG
AAAGATGGAAAACCATTTCGTTACATCTCTGGTAGTATGCATTATTTCCG
TACACCGCATCAACTTTGGGAGGATCGATTCTATAAAGCGAAGATGTCTG
GATTAAATGTCATTCAAACATATGTCGCATGGAACATGCatgaaatgttt
gaaaatgtctaccattttgaaaatgatctTGACATCGTTTCGTACATTAG
ATTGGCTCAACAGTACAATCTCATGATTTTGTTGAGGCCTGGACCCTACA
TTGATTCTGAATGGGAATATGGCGGTTTTCCTTATTGGATGAGCAGCAAA
GTTGGAAAATTGATCTGAACTTCAGACCAAGGATATCTCAATCTTGTTGA
CAAATGGTTTTCTGTTTTGCTACCGAAAGTTAAACCACTTTTATATGAAA
ACGGAGGACCTATTATTGGTGTTCAGGTTGAAAATGAATATGGTAGTTAT
GGTTGTGATGAAAAATACATGTTAGCAATGGAACAAATGTTAAGAAAATA
TCTCAGTCAAAAAGTCTTTCTATACACCACAGACCCTATCATTGATCAAG
CTTTACAGTGTGGTTCAATTTCATCCTTGTATAGAACAGTCGATTTCGGA
GCAGGTCATGATGTGAATAAGTCGTTTGCACTGCAAAGGAAATATCAGCC
GAAAGGACCCTATGTTAATTCGGAATACTACACTGGTTGGTTTGATAACT
GGGGTGAAGGACATCATGCTGAACGACCTGAATACATAGCACATTATTTG
GATCAAATACTGAGCTTTGAAAATGCTTCCGTCAATTTGTATCTGTTTGA
AGGTGGTTCAAACAGAAATTTTATGAATGGTGGAAGTTCGTGTGTGCATG
TTtcgttcattcaatttttgacgacatttttggtcaaaaaattgaatttc
gatggcaatattcaattttcaattttcgagttaaaa Run BLAST on NCBI protein sequence of TCONS_00012725-protein >TCONS_00012725-protein ID=TCONS_00012725-protein|Name=TCONS_00012725-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
MLAMEQMLRKYLSQKVFLYTTDPIIDQALQCGSISSLYRTVDFGAGHDVN
KSFALQRKYQPKGPYVNSEYYTGWFDNWGEGHHAERPEYIAHYLDQILSF
ENASVNLYLFEGGSNRNFMNGGSSCVHVSFIQFLTTFLVKKLNFDGNIQF
SIFELK Run BLAST on NCBI transcript from alignment at sc0000147:118852..122482- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012725 ID=TCONS_00012725|Name=TCONS_00012725|organism=Clytia hemisphaerica|type=transcript|length=3631bp|location=Sequence derived from alignment at sc0000147:118852..122482- (Clytia hemisphaerica)
CGTGGTTCAAAAATACTGTTTTGTTTTTAAAATCGATGTCTAGTTTATTT
AAGATAGCGTAAATTTTATGGTGTCAGACTTGGCAAAAGTAAATCATGCT
AACTTTGATTCTCCTGGTCCTACAGTTGCATTCTCTAACCGGATATCCAC
TGAACAACGAGAGATCGTTTACAATTGATTATGAGCACAACACATTCTTG
AAAGATGGAAAACCATTTCGTTACATCTCTGGTAGTATGCATTATTTCCG
TACACCGCATCAACTTTGGGAGGATCGATTCTATAAAGCGAAGATGTCTG
GATTAAATGTCATTCAAACGTACGTGTCAAGCTTTTCACGCTTTTTCATA
AGAATGGTCATTTTTTTCATATCATCATTTCATTTTTTTGATTCAGAACC
TCCAAACGACAAACTTTCTTTCTACGCTCACTCCCCTCCGCACTCCCCCC
TGTGATATCGTTCCAGCCCGGTACACCTTTTCGACCGTAGCCACCAATTG
CCGCGCGGGCATATTTTGTCCGCTTTATCCCACTAAAACCGTCCCAGTCC
TTTTTTCGCAACTACAGAGAAATGTGTCAAAAAGGATTGGATTGAGTTTA
GGGGGATGATTAAATAATTAAGTGGCACTTTAATGGGATAAACTTTCGCG
GGGATTAAATTTCGCGGATTTCGTGGATTTGGGTGTCATCCGCGAAAATC
TGCGAAATTAAATCCCAATGGAAATTTGGAAGGGCCTCATCCGCGAAATA
TTTCTAATCAAAACTCAAAATATGTCATATAAATACTTATTGAATGGTTA
CTTGCATCAAAAAAGCGCTGATAATGTGTATTTCAACAACCAAAATGCAT
GATTTGACACTAAAAGTCACAAAATCGTGAAAATATTGCCACCCTATAGT
GCCACACGCGAAATTAAGTCCCTGCTAAATTTTTGAATTTCGTGGATAGG
CCCAACCGCGAAATTTAATCCCCGCGAAAGTTTATCCCATTAAAGTAACT
GCGCGACTACGGTCGAAAAGGTGCATTGCTAATCTGATTATCTGGCCTCT
TCATTTATCAAAGCTGTTTAAAACTGTCTCTGTGACTGAAAGAATCGAAT
CTCAAATGTGTTTTCCATTTACAATTGACTCTCGTTAATACGAACTGGCA
CGAGGAAAATTGAAACTTTTTTCGAATTACAGAAAGATTCCAATTATAGT
ATTTTAAAAGGTTTTCTATTGGAAAGGGACTGAAAACATGTTCGAAAGAT
TCAAACCCGGGGGGGGGGTACTAGGGTTGCGAGCTGACGGGGGGGGCCGC
CCGACTTTGGACCCTTACCGGGACTAAAAAGGAGAAAACAAAGGAACATT
TTGGGAATTTTACGACCCTTACCGGGACTAATTTGACCAATTTTGACCAA
ATTTCGATCTTTCAGGGGATAAAAAGTTGAAATTTTCCTATTTTTCCGAC
CCTTACTGGGACTGAAATTTGATTTTCTGATTTTTGCGACCCTTAGCGGG
ACTTTGGAAGTCCAAAAAAGGTACCCTTAAGGGCGGCACATACCGTCCCT
TCCATTTGCCTAAGTACCCCCCCTCCGGGAGTTCGAATAAGCGAGAGTTT
ACTGTATATTAACTGGAGTATTTGCATTTCTTCCTTTCAGATATGTCGCA
TGGAACATGCATGAAATGTTTGAAAATGTCTACCATTTTGAAAATGATCT
TGACATCGTTTCGTACATTAGATTGGCTCAACAGTACAATCTCATGATTT
TGTTGAGGCCTGGACCCTACATTGATTCTGAATGGGAATATGGCGGTTTT
CCTTATTGGATGAGCAGCAAAGTTGGAAAATTGATCTGAACTTCAGACCA
AGGATATCTCAATCTTGTTGACAAATGGTTTTCTGTTTTGCTACCGAAAG
TTAAACCACTTTTATATGAAAACGGAGGACCTATTATTGGTGTTCAGGTA
ATTGATAAAAGTTTTCCCCTTTGAGCTCCAAGTAGGAAAAATATCACTGG
TTAAGATAGTTGACGGTAAAAAAGGGAGTAATTTAATTAAACCGCGTCGT
TGTATTTCGCTATTACAATCTTCGTCTTTTTTTCTCAGGTTGAAAATGAA
TATGGTAGTTATGGTTGTGATGAAAAATACATGTTAGCAATGGAACAAAT
GTTAAGAAAATATCTCAGTCAAAAAGTCTTTCTATACACCACAGACCCTA
TCATTGATCAAGCTTTACAGTGTGGTTCAATTTCATCCTTGTATAGAACA
GTCGATTTCGGAGCAGGTCATGATGTGAATAAGTCGTTTGCACTGCAAAG
GAAATATCAGCCGAAAGGACCCTATGTAAGACCACCCTTTCTTTTACCTT
CAAGTATGACAGAGACTACATTGCGCAACGCGTCTGAATTCATTTTGGTC
TTCCATTTCCATTGGGTGGCATTTAGCCCTTTATCGTTATTCCGATCACT
GGAACACTTGTATCCAGTCCTTTAAATCGCGTTTTTGATTTTTCTGACAT
AGTGCTCATGATAGTACTAACATCCATCAGAAAAATAAAAAAGTGGTGCA
AATGGCTCTGGGTTAGGTTGGGTAGCATATTACCTACCAAAACCTCTCAC
TCAGCAATTCTTGCTTATATTTTACAGGTTAATTCGGAATACTACACTGG
TTGGTTTGATAACTGGGGTGAAGGACATCATGCTGAACGACCTGAATACA
TAGCACATTATTTGGATCAAATACTGAGCTTTGAAAATGCTTCCGTCAAT
TTGTATCTGTTTGAAGGTAACTTGTGTATTCAATTCTATTTTTCAGAAAG
ATTGAATGTTCATATTCATGTCATTTATAGATTGATATGTTTCAACCTCT
TCTCTATGTATCCGGCTAGGTCGCGATATATGTGTGTCTGAAAATGTCGT
TGCTTTTCACGTCTAATGGAATAAACTGACGTACGGCAAGTGAGAATTGT
CATGTATGAAGTCGGCAATTTCTCTCTCAATACGAAAATTTCATACTATC
ATACTACAGTCAGTAAAACATAACGGGATAATGCTCTTCCACATGCTATG
ATTGTGTTACGTTANNNNNNNNNNNNNNNNNNNTACAGCGATGTCTCCAT
GGCTGAATTTCTTGGGGCAAACGGGGCAGAGTGTGGCGAGCTGTGGCAAA
ATTTTATATTATAGAGAATACAGCGATGTCTCCATGACTGAATTTCTTGG
GGCAAACGGGGCAGAGTGTGGCGAGCTTGAATGTATCCTAGGCTTCATTT
ACACGACTGTTGGACGCCAGGGAATATTATCTGGCGCTATCAGTAAGCAT
CAAAAAGCTGATAATACGCAGGGAACAAAGTTTGCAAAAATAATTGAGGA
TATCTAAGGACAAAAACCACTCATATTTCAAACACTCTCGTTTATGACAT
TCTCAAATTTTGTGAAAAATAGACCAACTTCAACAGGCCTTGCAAAGATC
ATACCTGGACCTTCTTTAAAGGTTTTTTATTACTTTCTGTCCGATAGGTG
GTTCAAACAGAAATTTTATGAATGGTGGAAGTTCGTGTGTGCATGTTTCG
TTCATTCAATTTTTGACGACATTTTTGGTCAAAAAATTGAATTTCGATGG
CAATATTCAATTTTCAATTTTCGAGTTAAAA Coding sequence (CDS) from alignment at sc0000147:118852..122482- >TCONS_00012725 ID=TCONS_00012725|Name=TCONS_00012725|organism=Clytia hemisphaerica|type=CDS|length=1404bp|location=Sequence derived from alignment at sc0000147:118852..122482- (Clytia hemisphaerica)
GTGGTTCAAACAGAAATTTTATGAATGGTGGAAGTTCGTGTGTGCATGTT
TCGTTCATTCAATTTTTGACGACATTTTTGGTCAAAAAATTGAATTTCGA
TGGCAATATTCAATTTTCAATTTTCGAGTTAAAAGTTAATTCGGAATACT
ACACTGGTTGGTTTGATAACTGGGGTGAAGGACATCATGCTGAACGACCT
GAATACATAGCACATTATTTGGATCAAATACTGAGCTTTGAAAATGCTTC
CGTCAATTTGTATCTGTTTGAAGATGTTAGCAATGGAACAAATGTTAAGA
AAATATCTCAGTCAAAAAGTCTTTCTATACACCACAGACCCTATCATTGA
TCAAGCTTTACAGTGTGGTTCAATTTCATCCTTGTATAGAACAGTCGATT
TCGGAGCAGGTCATGATGTGAATAAGTCGTTTGCACTGCAAAGGAAATAT
CAGCCGAAAGGACCCTATGTGGTTCAAACAGAAATTTTATGAATGGTGGA
AGTTCGTGTGTGCATGTTTCGTTCATTCAATTTTTGACGACATTTTTGGT
CAAAAAATTGAATTTCGATGGCAATATTCAATTTTCAATTTTCGAGTTAA
AAGTTAATTCGGAATACTACACTGGTTGGTTTGATAACTGGGGTGAAGGA
CATCATGCTGAACGACCTGAATACATAGCACATTATTTGGATCAAATACT
GAGCTTTGAAAATGCTTCCGTCAATTTGTATCTGTTTGAAGATGTTAGCA
ATGGAACAAATGTTAAGAAAATATCTCAGTCAAAAAGTCTTTCTATACAC
CACAGACCCTATCATTGATCAAGCTTTACAGTGTGGTTCAATTTCATCCT
TGTATAGAACAGTCGATTTCGGAGCAGGTCATGATGTGAATAAGTCGTTT
GCACTGCAAAGGAAATATCAGCCGAAAGGACCCTATGTGGTTCAAACAGA
AATTTTATGAATGGTGGAAGTTCGTGTGTGCATGTTTCGTTCATTCAATT
TTTGACGACATTTTTGGTCAAAAAATTGAATTTCGATGGCAATATTCAAT
TTTCAATTTTCGAGTTAAAAGTTAATTCGGAATACTACACTGGTTGGTTT
GATAACTGGGGTGAAGGACATCATGCTGAACGACCTGAATACATAGCACA
TTATTTGGATCAAATACTGAGCTTTGAAAATGCTTCCGTCAATTTGTATC
TGTTTGAAGATGTTAGCAATGGAACAAATGTTAAGAAAATATCTCAGTCA
AAAAGTCTTTCTATACACCACAGACCCTATCATTGATCAAGCTTTACAGT
GTGGTTCAATTTCATCCTTGTATAGAACAGTCGATTTCGGAGCAGGTCAT
GATGTGAATAAGTCGTTTGCACTGCAAAGGAAATATCAGCCGAAAGGACC
CTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012725-exon-sc0000147-1575043694:122164..122482 | TCONS_00012725-exon-sc0000147-1575043694:122164..122482 | Clytia hemisphaerica | exon |
| TCONS_00012725-exon-sc0000147-1575043694:120536..120842 | TCONS_00012725-exon-sc0000147-1575043694:120536..120842 | Clytia hemisphaerica | exon |
| TCONS_00012725-exon-sc0000147-1575043694:120158..120394 | TCONS_00012725-exon-sc0000147-1575043694:120158..120394 | Clytia hemisphaerica | exon |
| TCONS_00012725-exon-sc0000147-1575043694:119717..119855 | TCONS_00012725-exon-sc0000147-1575043694:119717..119855 | Clytia hemisphaerica | exon |
| TCONS_00012725-exon-sc0000147-1575043694:118852..118985 | TCONS_00012725-exon-sc0000147-1575043694:118852..118985 | Clytia hemisphaerica | exon |
| TCONS_00012725-exon-sc0000147-1510915933:122164..122482 | TCONS_00012725-exon-sc0000147-1510915933:122164..122482 | Clytia hemisphaerica | exon |
| TCONS_00012725-exon-sc0000147-1510915933:120536..120842 | TCONS_00012725-exon-sc0000147-1510915933:120536..120842 | Clytia hemisphaerica | exon |
| TCONS_00012725-exon-sc0000147-1510915933:120158..120394 | TCONS_00012725-exon-sc0000147-1510915933:120158..120394 | Clytia hemisphaerica | exon |
| TCONS_00012725-exon-sc0000147-1510915933:119717..119855 | TCONS_00012725-exon-sc0000147-1510915933:119717..119855 | Clytia hemisphaerica | exon |
| TCONS_00012725-exon-sc0000147-1510915933:118852..118985 | TCONS_00012725-exon-sc0000147-1510915933:118852..118985 | Clytia hemisphaerica | exon |
| TCONS_00012725-exon-sc0000147-1491911889:122164..122482 | TCONS_00012725-exon-sc0000147-1491911889:122164..122482 | Clytia hemisphaerica | exon |
| TCONS_00012725-exon-sc0000147-1491911889:120536..120842 | TCONS_00012725-exon-sc0000147-1491911889:120536..120842 | Clytia hemisphaerica | exon |
| TCONS_00012725-exon-sc0000147-1491911889:120158..120394 | TCONS_00012725-exon-sc0000147-1491911889:120158..120394 | Clytia hemisphaerica | exon |
| TCONS_00012725-exon-sc0000147-1491911889:119717..119855 | TCONS_00012725-exon-sc0000147-1491911889:119717..119855 | Clytia hemisphaerica | exon |
| TCONS_00012725-exon-sc0000147-1491911889:118852..118985 | TCONS_00012725-exon-sc0000147-1491911889:118852..118985 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000147 | supercontig | sc0000147:118852..122482 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR031330 | Gly_Hdrlase_35_cat |
| IPR017853 | Glycoside_hydrolase_SF |
Blast
BLAST of TCONS_00012725 vs. Swiss-Prot (Human)
Match: BGAL (Beta-galactosidase OS=Homo sapiens GN=GLB1 PE=1 SV=2) HSP 1 Score: 325.094 bits (832), Expect = 3.926e-104 Identity = 155/296 (52.36%), Postives = 201/296 (67.91%), Query Frame = 3
Query: 156 NERSFTIDYEHNTFLKDGKPFRYISGSMHYFRTPHQLWEDRFYKAKMSGLNVIQTYVAWNMHEMFENVYHFENDLDIVSYIRLAQQYNLMILLRPGPYIDSEWEYGGFPYWMSSKVGKLI*TSDQGYLNLVDKWFSVLLPKVKPLLYENGGPIIGVQVENEYGSY-GCDEKYMLAMEQMLRKYLSQKVFLYTTDPIIDQALQCGSISSLYRTVDFGAGHDVNKSFALQRKYQPKGPYVNSEYYTGWFDNWGEGHHAERPEYIAHYLDQILSFENASVNLYLFEGGSNRNFMNGGSS 1040
+R F IDY ++FLKDG+PFRYISGS+HY R P W+DR K KM+GLN IQTYV WN HE + Y F D D+ ++RLA + L+++LRPGPYI +EWE GG P W+ K L+ +SD YL VDKW VLLPK+KPLLY+NGGP+I VQVENEYGSY CD Y+ +++ R +L V L+TTD L+CG++ LY TVDFG G ++ +F QRK +PKGP +NSE+YTGW D+WG+ H + E +A L IL+ ASVNLY+F GG+N + NG +S
Sbjct: 28 TQRMFEIDYSRDSFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPWPGQYQFSEDHDVEYFLRLAHELGLLVILRPGPYICAEWEMGGLPAWLLEKESILLRSSDPDYLAAVDKWLGVLLPKMKPLLYQNGGPVITVQVENEYGSYFACDFDYLRFLQKRFRHHLGDDVVLFTTDGAHKTFLKCGALQGLYTTVDFGTGSNITDAFLSQRKCEPKGPLINSEFYTGWLDHWGQPHSTIKTEAVASSLYDILA-RGASVNLYMFIGGTNFAYWNGANS 322
The following BLAST results are available for this feature:
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