TCONS_00012704 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00012704
Unique Name	TCONS_00012704
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1556

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000147:529359..536394+
coding sequence from alignment at sc0000147:529359..536394+

transcript sequence

>TCONS_00012704 ID=TCONS_00012704|Name=TCONS_00012704|organism=Clytia hemisphaerica|type=transcript|length=1556bp
GTTAGACAACTATTGAAAGTACATGGGAgagaaaaaagtgaaagaacAGC
TATCAATCTTACAATACTCATTCGCTGGTGCATTGTCAGGAGTGGTTTCC
AGATTTCTTGGTCAGCCTTTGGATGTTATAAAAATCAGACTTCAATTACA
GAACAAAGagGCTGGACAGTTGAAATATACAGGAGTCCTCAATACTTGCA
AGCTTATTTTCAAAGAAGAAGGGCTGTTTGGGTTTTGgaaaGGTCATGTC
CCTGCCCAGGTCCTTTCCATTTTCTATGGAAGTGTGcagTTCGCATCCTT
CGAAAGATCGAGGAGTTTCCTGAACCCATATCTTTGTCAAAGAAAAGAGT
TGAATGattttttgtcTGGTGGTAATGCCGGCATCGTATCATCATTATTT
GTGCACCCGTTGGATTTACTGCGTACCAGAGCTGTCAGTAACCAAGCCAA
GCAGTCTTTATCGTTACACATTCTGATCAAAAGCACAGCTCAAGAAAGTG
GTATTCGAACTTTTTACCAAGGAATCATTCCCAACTTGGCGTACGTTTAT
CCGTATTGTGGATTGAACTTCTTGTTTTATGGCTTGCTAAACAGGACATG
GAACTTACTACAGTTCAGAGAGTCCAGCGTCAAATCTCTGGCATGTGGTA
CTATAAGTGGAATCTTCGCAAAAGCTTTACTTCTACCAATTGATAACGTG
AAGAAGAGATTACAAGTGCAAGGTTCTAAAGACTTCCAATCGTCTTACAA
GGGTATGGTTAACTGTCTTCAAAGTGTGATTCGTGAACAAGGAATACATG
CCTTGTATCGTGGTATCGTTCCTTCCGTGCTAAAGACTGGTCTGGCAACT
GGTATTTCTTTTTTCGTCTACGAAGAAACCTGCAAACTGTTGTCAAAATA
AAGGATACAATTTATTTGGCAATGAATTACGCGAAATCTttgatttgatc
aaataattcCATAACCCAAATTACATGCTACGAATGCTAAGGTTTTATGG
ATCGTCACGAACAGAGTTAGCAGGTATTCATTTGTCAGAGAAAGCTTGAA
TATGCTTACTTCAAGTAAAGGACACTCAAGTAAAAGGAAAATGGATGGCT
CCTTTAGCAAATATGGTTTATTTGTCATTCGTCGCAGATAATTCATTGAA
AACTTTTGCAAAGAATACTTAAGATTCTTTCTTAAGGACTctgtttaaaa
atgtttttgacgCGCAGGAAGACGACTCCAAGAAATCAAGTACTGCTCAA
AGGTCAATTAGAGCAATTCAAATTGATGGACTGATTTGTTTTCTGAAATT
ATTGTTATaatagaatatttttttaataaacgcgtccctttattttttat
cattcatACCGGAAAATAATTCAACTTATATGCTTCCGCGATGAGGAAAA
TCGATTGGTGTTAACAAggcggttcccgtcgtcgcaatcGCCAGTTTCAA
CTTTTGCTTGCACATCCAAAGCCCTTAAAGTCTATGTAAACATGCATAAC
TTAAACCGAACGCAATATCTTTATATTAATAGCCGCAAATGCAAAATGAc
cccccc

Run BLAST on NCBI

protein sequence of TCONS_00012704-protein

>TCONS_00012704-protein ID=TCONS_00012704-protein|Name=TCONS_00012704-protein|organism=Clytia hemisphaerica|type=polypeptide|length=292bp
MGEKKVKEQLSILQYSFAGALSGVVSRFLGQPLDVIKIRLQLQNKEAGQL
KYTGVLNTCKLIFKEEGLFGFWKGHVPAQVLSIFYGSVQFASFERSRSFL
NPYLCQRKELNDFLSGGNAGIVSSLFVHPLDLLRTRAVSNQAKQSLSLHI
LIKSTAQESGIRTFYQGIIPNLAYVYPYCGLNFLFYGLLNRTWNLLQFRE
SSVKSLACGTISGIFAKALLLPIDNVKKRLQVQGSKDFQSSYKGMVNCLQ
SVIREQGIHALYRGIVPSVLKTGLATGISFFVYEETCKLLSK

Run BLAST on NCBI

transcript from alignment at sc0000147:529359..536394+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00012704 ID=TCONS_00012704|Name=TCONS_00012704|organism=Clytia hemisphaerica|type=transcript|length=7036bp|location=Sequence derived from alignment at sc0000147:529359..536394+ (Clytia hemisphaerica)
GTTAGACAACTATTGAAAGTACATGGGAgagaaaaaagtgaaagaacAGC
TATCAATCTTACAATACTCATTCGCTGGTGCATTGTCAGGAGTGGTTTCC
AGATTTCTTGGTCAGCCTTTGGATGTTATAAAAATCAGACTTCAATTACA
GAACAAAGaggtaaaattttcaatttatctAATTTCTGCAATCTCATCGA
TTATTAGTTTATAGCTAGCTGTCCTATTGTAACGCTTATTCatgcatttt
gtttttttcacgtACCTGCTTTTAACacaaggggccgtccacatagtacg
tacgcacaaagggggagagggggtcttctcaaaagcgtatgctggCGTTC
AGGGGGAGAGGAGGGGTCAAagaaaaatgtacgtacgccgagaaaaactt
tttcatttttgcttgtttttttgtcgacttttacgcttctCATCCGcgtc
aaggaaaagaaaaagaaaattttttttataaccattgagtttcatgtatg
aaataaaggtctgAACCAAGcaatttgaattcgaaattttcttcaatcgA
GGGGGTATAGGTATAGCCATTTGTGTACGCTTgtgtacagggggaggggg
tactggatttttgacattttagtgcgtacgtaatatgtggacggccccca
aTACTAAAAATCTAACTAATGGAAATTCAATTTCTGATCAATCCGTCAGA
GAGATTAAGATATATTTTCCATACCTTTAGGCAAAAACAGACATTGAGCA
ATTCCTGATATTCCTCTTTGGAATTTAGTTTTGGAACTTTTTATTCAAGT
CAATTGCAGCATTTTGTTGTcaattttatttacaaaatttgataGATTAG
AGTTAATTATGGAAAACCATTAAAGAGGAAAAAACATTCAAATGGCAAAG
GCGTAAAAAGTGCTGGCAAAAACAGTGAACTTTTTTCCTTGTTGGCAGCA
ATTTGACaacctttttcttttcaaattcctGCTGACAGAAGAGATACACA
GTTGAAGTTTATTCACTTTAATTGTGCACTaaagtttgttatttttacCA
ATTCTAAAGCGAATTGACTTTAAATACATTCTGAAACAATACGATCccac
ttttttttaaacattattattattaataactgttaataaacattaaaaat
tgCTATAGTAAATAGCTCTTTGTACTATCATAAAATCTCTGATTTTAGAA
TCTttcaaagttttatatttttttgttcattcagGCTGGACAGTTGAAAT
ATACAGGAGTCCTCAATACTTGCAAGCTTATTTTCAAAGAAGAAGGGCTG
TTTGGGTTTTGGtatgtttgatttttcaaaatgatattATCATACAATTA
TTAGATAATTCAGTGGTTTTTGTTAAAACTTGTACTCCAGACAAGATTTT
GGTCACCACTTTacttcaaaagttttctttatttcaggaaaGGTCATGTC
CCTGCCCAGGTCCTTTCCATTTTCTATGGAAGTGTGcaggtaaaaatata
aattttattttgttcttaatgTCTTTGATAAAGCTTTTTAAGGAttattt
tcacgcattcatgtGCCTCCTCTTATGAAACTACCTACCCAAAGCTGGAA
GAGAACAACTCATTTTgctgaaaatcacaaaatacCTGTTTATTCTTACA
ACCGGAAAGAGGGTGCACTATTTGCATTACACAACTTTTGTTCGGATTtt
ggttttcatttttcatttttgtattgaCCCTTCAATTTTTAGCATCCCTC
GAACCTTGAAACATGCCGATCCAAAAGTTTTTAGTGTTCTCCAAAACTGA
GTCTTCACACTGTAAATTGCTTTATTTCTCAACAGTTCGCATCCTTCGAA
AGATCGAGGAGTTTCCTGAACCCATATCTTTGTCAAAGAAAAGAGTTGAA
TGGTATGTATCTTAAGGAAAGACTACTACGATATCCCACTCCTATTCCTG
GCaatttacttaattttttagaTGAAGGATACATCAAATATATTGATCAC
AAAGTATTCCAGATATTATAATAGATCATGTAAATAATCCCTTACACGAC
AGTcgacacaagaaaaaaaaatgttttttttttaattttgtagatttttt
gtcTGGTGGTAATGCCGGCATCGTATCATCATTATTTGTGCACCCGTTGG
ATTTACTGCGTACCAGAGCTGTCAGTAACCAAGCCAAGCAGGTAAAAGCC
TCtatatttatgatatgcaccattgcaatgtcttctgacattacatcacg
cacggacccaatagctgattggttgtaagtgacgtaaaatcagtcaatac
gtcactttcagcCAAtcctgttgggtccgtggaagacattgcaatggtgc
atatcatgaattgttgtAATGGTAGCTAAGAGGTTCTCCGAAACACAGAA
GCCTTGTGCTTGAATTTTTTATAACACAAAATCGAACTTTGTGAACAATA
CAATTATAGAACAGTCTCCTCATCAGAAGCATGAAACTGCTAGATATAGG
TCACGTGACTCGGCTAGCCCGTTCAAACCCACCTCCATATGAACAACTGC
TAAGTTTGTTTAGAATTTTCAGACTAATGCGATAACTAGCTATTTTCAAG
CACTCTCACGATTGTTAACTTTTCGATTTTTCCCATCCCCTCTGGGCATT
TATTAGGACCCTCCGtttaacaatttttgaaataaatttgaacTGTCAAA
AAAgggtcccttattttgctcaaaatagCCTCGTAATGGtctataattac
cttattttgggtttATTTAAAGGTACAATATCATACCCCCCGGCAATTTg
gtcccccgtttattaaaatttacaGATTTACTAGCTCCCACCGTTTCAGA
CCCTGCTTCCGGTTTATTAGGCAACTGAGAGTATAGTTGAGAGTTTAGCT
AATTCTAAGAAAACGGGACATATCCGCTTTTATATCCGGCTTTTACCCTT
GAAAAATGCTGTAATGTCAACAGAGGAgatatttgtttatattgtcaCCA
AAGCACTCGACTAAGCACTAAATGACATCTggtattgttttattttcttg
CAATAAAAGCTTTTACTATCAGAATAACTTACAGTTATAACGTGTTCAAA
AGTTAGAAATAGTTGATTATCTCTTTCAAACACATTACTAGGTTAAAATC
AGGATCCAGAAAACAAACgaataatttttcaactttttcagtttcacCTC
CTTCCTTCTCTTTAGTCTTTATCGTTACACATTCTGATCAAAAGCACAGC
TCAAGAAAGTGGTATTCGAACTTTTTACCAAGGTATTCGAATGTTTCTTA
TAAATCTTTTATTCTTTGATTTCTATTGCTTTGTccattcaaaaaatata
taaaaataatttttggaaacTGTCTTTGACTAGAAAATGTTTGTCCAACT
GATTAGCAGTTTATTTATAGCTAAAAGTCGTCGAAATTTTCCTCATCCAA
TAGGTCGATCTTTATTGCCGTGTTGTGATTTGGCGTACCCGGCGGATTGA
GGGGTGCTTGCCCCATACTTATCATCCACCTCAATGTACaatcttttgga
aattttgaaacaccTAATATCTGTGTCAAAAAATGCAGTGTTTTTACTTT
TGGCCGTAACTTTCCAACCAGTTGtcttataataaaaagtttgatatatc
gttggaaagatatcaaATGCGCTCATGTTTTCCACTAATTAGTATTTCAA
AATTCGTCCAAATTAGtgaagaaaaacgaagaagaaaatttgctaatttt
gatAGAAGATGCGCTCATGTTTTTGGCTTCGTCCAAAAAAGTGcaggaaa
acaaagaaaaaaatttgctacttttgatagaaaggtgctatgaaaaagat
ttttacatCAATCGAAAGTTGAATAATACGCGAGTTCAAAAATATATGGG
TTCGgtcaaagattttattttttgttttgagattTAAAGGGAAATCTGGC
TaaaaatttcctgaaaattccaaaaaaaggaGGGAGGGCCTAACGTTTTC
GAATATTCTGGGGGCGAAAGGGGTCTCAACTGATTTTGAGATAATCAAAA
GCCAACTCTTTAAATCTAAGCATGGAttgtaaatatattttctcagaatt
gtttttttttcagtattTAGATATTCACGAGTAGTTGTGTTTTTATATTT
CACTAAGCCATAGTATTTAGGTATTTAGATAATGATGTACGTATTTGAAA
AAGGAGAAAGATTTTAGCATTCATTGAACCCATGTCTAGCTTTTGCCCGG
TAAACCCGAGAACATCTGGGGGCTAGCATGAATCAaattttctggggggg
ggggctagggGAAAAGGGGGGACTGAACGTTTttgaattttctggggggc
tgCTGATACCCCTGAGGACACTAGAGTTGTTATATTTTCGGACTCGTGTA
TTATTCAGCTTTCGATTGATTTGAGACACATTTTCGATagtacctttttt
tcttcaattttcgtcactttcttGCACAAATCTTGAAAAACTGAGTTGTA
GAAAATATAAGCGTatttaaatatctttccaacgatatccAAACTTTTTA
TTATACGACAACTGGTTGGAAAGTTATCGCCGAAAACAAAATTACTTTAC
ACCTTTTTGACACAGACTTCAGTTATTCCAATGTCATGGTGAAAAACTGt
cttttgacataaaaaactgcCATTCACATGTCATGGACATCGCTGGTCTT
TGTTTAGTTTGTAAATTTCAATAAAGTACCTAAAGCaggtttattttttt
attttttgtcccTTTTTAAGGAATCATTCCCAACTTGGCGTACGTTTATC
CGTATTGTGGATTGAACTTCTTGTTTTATGGCTTGCTAAACAGGACATGG
AACTTACTACAGGTATACCTTTGTATTATATGATGATATTTCTCACATAA
ATTTCTAAAGGATAGGATTACTATGATAAGATATCagataaaaacattca
aaattactgGATCAGATCGAATTCAAAGTGCTAAATTTTCTTGCTTCATC
CGGTGTATGAATGTTGTTTAAAATATATGTACTTACTATGATAATTACTT
TTCCTTTCATCCCTTAGTTCAGAGAGTCCAGCGTCAAATCTCTGGCATGT
GGTACTATAAGTGGAATCTTCGCAAAAGCTTTACTTCTACCAATTGATAA
CGTGAAGAAGAGATTACAAGTGCAAGGTTCTAAAGACTTCCAATCGTCTT
ACAAGGGTATGGTTAACTGTCTTCAAAGTGTGATTCGTGAACAAGGAATA
CATGCCTTGTATCGTGGTATCGTTCCTTCCGTGCTAAAGGTATACAGTAT
GATTTTTTTGCTGAATAATTTGAGACTTCTTCAATCTGATTAGGATGACG
GGCTTAAAAATAGCGAAATTTCCTGGGTTTaaaatttagtttgaaaattt
gaaaaagaagttaAATATTTTCGTGTGGATTTACTTTCACAAGTCAACAT
TTTTACGTGATATCGCGTGATTTTTCCCACAAAAAGGCAAAAGTTAAAgc
aacaaaaacatgaaaagtagGACTTTCTTATATTGGGCATCACACTTACT
AAAGTGATCGCTTCATATGTGCTCGATTTCAAGTATTTTATGATTTACTC
AATACAAGAGGCGGGGTTAGTGAGAAAATGTTTCGCCCACGTATACTGTA
ATTTAAAAGTTGATCGACCGCAAGCTATGGCAGTTGTATTGTTTCCTTCG
CAGCTTTCGTAGattaaaggtatttttttacataagtgttcccgtttcat
ataaGACACATACTtaatatcaggacagtgtctgcctattgttatattgt
gctgatataaataacaaaaaaatgtttctcttttcctctttctgacaaat
cttgctccacattcgcgtcaattcaatatcaaaaagcctttaaattaaag
ttgatgagtaagcaaacgatatcactcttatttaaaaacaaaacctttaa
agaaatCGTCCTTCCACTTACCGTTAATACCACAATGCTGTGTTTCATAA
AGTACACAAATGATATTTATCCTTTATTAACAGAAATATTCTTTAACCCT
CCTAATGGAcgtaaaaatatatcaaaaataggtttcttttgctAACCTTC
AGATCATAGCTCAGAACCACTTCATTTTTACCCAAAGCTTTCTCGTTTTT
TTGGAAAGCTTTCCAACGGTATCAAAGTTTTGTCTGAAACCCATTTTAAG
GTCCGcaatcaatttttgaactttgagaAGTCGGAAAAACCTGAGAAAGT
AATGTGATCTTCAGATAAACtgtattttaacttttattaCAATTGATGTC
AATATTTGTACCTAGACTGGTCTGGCAACTGGTATTTCTTTTTTCGTCTA
CGAAGAAACCTGCAAACTGTTGTCAAAATAAAGGATACAATTTATTTGGC
AATGAATTACGCGAAATCTttgatttgatcaaataattcCATAACCCAAA
TTACATGCTACGAATGCTAAGGTTTTATGGATCGTCACGAACAGAGTTAG
CAGGTATTCATTTGTCAGAGAAAGCTTGAATATGCTTACTTCAAGTAAAG
GACACTCAAGTAAAAGGAAAATGGATGGCTCCTTTAGCAAATATGGTTTA
TTTGTCATTCGTCGCAGATAATTCATTGAAAACTTTTGCAAAGAATACTT
AAGATTCTTTCTTAAGGACTctgtttaaaaatgtttttgacgCGCAGGAA
GACGACTCCAAGAAATCAAGTACTGCTCAAAGGTCAATTAGAGCAATTCA
AATTGATGGACTGATTTGTTTTCTGAAATTATTGTTATaatagaatattt
ttttaataaacgcgtccctttattttttatcattcatACCGGAAAATAAT
TCAACTTATATGCTTCCGCGATGAGGAAAATCGATTGGTGTTAACAAggc
ggttcccgtcgtcgcaatcGCCAGTTTCAACTTTTGCTTGCACATCCAAA
GCCCTTAAAGTCTATGTAAACATGCATAACTTAAACCGAACGCAATATCT
TTATATTAATAGCCGCAAATGCAAAATGAccccccc

Coding sequence (CDS) from alignment at sc0000147:529359..536394+

>TCONS_00012704 ID=TCONS_00012704|Name=TCONS_00012704|organism=Clytia hemisphaerica|type=CDS|length=7911bp|location=Sequence derived from alignment at sc0000147:529359..536394+ (Clytia hemisphaerica)
ATGGGAgagaaaaaagtgaaagaacAGCTATCAATCTTACAATACTCATT
CGCTGGTGCATTGTCAGGAGTGGTTTCCAGATTTCTTGGTCAGCCTTTGG
ATGTTATAAAAATCAGACTTCAATTACAGAACAAAGagGCTGGACAGTTG
AAATATACAGGAGTCCTCAATACTTGCAAGCTTATTTTCAAAGAAGAAGG
GCTGTTTGGGTTTTGgaaaGGTCATGTCCCTGCCCAGGTCCTTTCCATTT
TCTATGGAAGTGTGcagTTCGCATCCTTCGAAAGATCGAGGAGTTTCCTG
AACCCATATCTTTGTCAAAGAAAAGAGTTGAATGattttttgtcTGGTGG
TAATGCCGGCATCGTATCATCATTATTTGTGCACCCGTTGGATTTACTGC
GTACCAGAGCTGTCAGTAACCAAGCCAAGCAGTCTTTATCGTTACACATT
CTGATCAAAAGCACAGCTCAAGAAAGTGGTATTCGAACTTTTTACCAAGG
AATCATTCCCAACTTGGCGTACGTTTATCCGTATTGTGGATTGAACTTCT
TGTTTTATGGCTTGCTAAACAGGACATGGAACTTACTACAGTTCAGAGAG
TCCAGCGTCAAATCTCTGGCATGTGGTACTATAAGTGGAATCTTCGCAAA
AGCTTTACTTCTACCAATTGATAACGTGAAGAAGAGATTACAAGTGCAAG
GTTCTAAAGACTTCCAATCGTCTTACAAGGGTATGGTTAACTGTCTTCAA
AGTGTGATTCGTGAACAAGGAATACATGCCTTGTATCGTGGTATCGTTCC
TTCCGTGCTAAAGACTGGTCTGGCAACTGGTATTTCTTTTTTCGTCTACG
AAGAAACCTGCAAACTGTTGTCAAAATAAATGGGAgagaaaaaagtgaaa
gaacAGCTATCAATCTTACAATACTCATTCGCTGGTGCATTGTCAGGAGT
GGTTTCCAGATTTCTTGGTCAGCCTTTGGATGTTATAAAAATCAGACTTC
AATTACAGAACAAAGagGCTGGACAGTTGAAATATACAGGAGTCCTCAAT
ACTTGCAAGCTTATTTTCAAAGAAGAAGGGCTGTTTGGGTTTTGgaaaGG
TCATGTCCCTGCCCAGGTCCTTTCCATTTTCTATGGAAGTGTGcagTTCG
CATCCTTCGAAAGATCGAGGAGTTTCCTGAACCCATATCTTTGTCAAAGA
AAAGAGTTGAATGattttttgtcTGGTGGTAATGCCGGCATCGTATCATC
ATTATTTGTGCACCCGTTGGATTTACTGCGTACCAGAGCTGTCAGTAACC
AAGCCAAGCAGTCTTTATCGTTACACATTCTGATCAAAAGCACAGCTCAA
GAAAGTGGTATTCGAACTTTTTACCAAGGAATCATTCCCAACTTGGCGTA
CGTTTATCCGTATTGTGGATTGAACTTCTTGTTTTATGGCTTGCTAAACA
GGACATGGAACTTACTACAGTTCAGAGAGTCCAGCGTCAAATCTCTGGCA
TGTGGTACTATAAGTGGAATCTTCGCAAAAGCTTTACTTCTACCAATTGA
TAACGTGAAGAAGAGATTACAAGTGCAAGGTTCTAAAGACTTCCAATCGT
CTTACAAGGGTATGGTTAACTGTCTTCAAAGTGTGATTCGTGAACAAGGA
ATACATGCCTTGTATCGTGGTATCGTTCCTTCCGTGCTAAAGACTGGTCT
GGCAACTGGTATTTCTTTTTTCGTCTACGAAGAAACCTGCAAACTGTTGT
CAAAATAAATGGGAgagaaaaaagtgaaagaacAGCTATCAATCTTACAA
TACTCATTCGCTGGTGCATTGTCAGGAGTGGTTTCCAGATTTCTTGGTCA
GCCTTTGGATGTTATAAAAATCAGACTTCAATTACAGAACAAAGagGCTG
GACAGTTGAAATATACAGGAGTCCTCAATACTTGCAAGCTTATTTTCAAA
GAAGAAGGGCTGTTTGGGTTTTGgaaaGGTCATGTCCCTGCCCAGGTCCT
TTCCATTTTCTATGGAAGTGTGcagTTCGCATCCTTCGAAAGATCGAGGA
GTTTCCTGAACCCATATCTTTGTCAAAGAAAAGAGTTGAATGattttttg
tcTGGTGGTAATGCCGGCATCGTATCATCATTATTTGTGCACCCGTTGGA
TTTACTGCGTACCAGAGCTGTCAGTAACCAAGCCAAGCAGTCTTTATCGT
TACACATTCTGATCAAAAGCACAGCTCAAGAAAGTGGTATTCGAACTTTT
TACCAAGGAATCATTCCCAACTTGGCGTACGTTTATCCGTATTGTGGATT
GAACTTCTTGTTTTATGGCTTGCTAAACAGGACATGGAACTTACTACAGT
TCAGAGAGTCCAGCGTCAAATCTCTGGCATGTGGTACTATAAGTGGAATC
TTCGCAAAAGCTTTACTTCTACCAATTGATAACGTGAAGAAGAGATTACA
AGTGCAAGGTTCTAAAGACTTCCAATCGTCTTACAAGGGTATGGTTAACT
GTCTTCAAAGTGTGATTCGTGAACAAGGAATACATGCCTTGTATCGTGGT
ATCGTTCCTTCCGTGCTAAAGACTGGTCTGGCAACTGGTATTTCTTTTTT
CGTCTACGAAGAAACCTGCAAACTGTTGTCAAAATAAATGGGAgagaaaa
aagtgaaagaacAGCTATCAATCTTACAATACTCATTCGCTGGTGCATTG
TCAGGAGTGGTTTCCAGATTTCTTGGTCAGCCTTTGGATGTTATAAAAAT
CAGACTTCAATTACAGAACAAAGagGCTGGACAGTTGAAATATACAGGAG
TCCTCAATACTTGCAAGCTTATTTTCAAAGAAGAAGGGCTGTTTGGGTTT
TGgaaaGGTCATGTCCCTGCCCAGGTCCTTTCCATTTTCTATGGAAGTGT
GcagTTCGCATCCTTCGAAAGATCGAGGAGTTTCCTGAACCCATATCTTT
GTCAAAGAAAAGAGTTGAATGattttttgtcTGGTGGTAATGCCGGCATC
GTATCATCATTATTTGTGCACCCGTTGGATTTACTGCGTACCAGAGCTGT
CAGTAACCAAGCCAAGCAGTCTTTATCGTTACACATTCTGATCAAAAGCA
CAGCTCAAGAAAGTGGTATTCGAACTTTTTACCAAGGAATCATTCCCAAC
TTGGCGTACGTTTATCCGTATTGTGGATTGAACTTCTTGTTTTATGGCTT
GCTAAACAGGACATGGAACTTACTACAGTTCAGAGAGTCCAGCGTCAAAT
CTCTGGCATGTGGTACTATAAGTGGAATCTTCGCAAAAGCTTTACTTCTA
CCAATTGATAACGTGAAGAAGAGATTACAAGTGCAAGGTTCTAAAGACTT
CCAATCGTCTTACAAGGGTATGGTTAACTGTCTTCAAAGTGTGATTCGTG
AACAAGGAATACATGCCTTGTATCGTGGTATCGTTCCTTCCGTGCTAAAG
ACTGGTCTGGCAACTGGTATTTCTTTTTTCGTCTACGAAGAAACCTGCAA
ACTGTTGTCAAAATAAATGGGAgagaaaaaagtgaaagaacAGCTATCAA
TCTTACAATACTCATTCGCTGGTGCATTGTCAGGAGTGGTTTCCAGATTT
CTTGGTCAGCCTTTGGATGTTATAAAAATCAGACTTCAATTACAGAACAA
AGagGCTGGACAGTTGAAATATACAGGAGTCCTCAATACTTGCAAGCTTA
TTTTCAAAGAAGAAGGGCTGTTTGGGTTTTGgaaaGGTCATGTCCCTGCC
CAGGTCCTTTCCATTTTCTATGGAAGTGTGcagTTCGCATCCTTCGAAAG
ATCGAGGAGTTTCCTGAACCCATATCTTTGTCAAAGAAAAGAGTTGAATG
attttttgtcTGGTGGTAATGCCGGCATCGTATCATCATTATTTGTGCAC
CCGTTGGATTTACTGCGTACCAGAGCTGTCAGTAACCAAGCCAAGCAGTC
TTTATCGTTACACATTCTGATCAAAAGCACAGCTCAAGAAAGTGGTATTC
GAACTTTTTACCAAGGAATCATTCCCAACTTGGCGTACGTTTATCCGTAT
TGTGGATTGAACTTCTTGTTTTATGGCTTGCTAAACAGGACATGGAACTT
ACTACAGTTCAGAGAGTCCAGCGTCAAATCTCTGGCATGTGGTACTATAA
GTGGAATCTTCGCAAAAGCTTTACTTCTACCAATTGATAACGTGAAGAAG
AGATTACAAGTGCAAGGTTCTAAAGACTTCCAATCGTCTTACAAGGGTAT
GGTTAACTGTCTTCAAAGTGTGATTCGTGAACAAGGAATACATGCCTTGT
ATCGTGGTATCGTTCCTTCCGTGCTAAAGACTGGTCTGGCAACTGGTATT
TCTTTTTTCGTCTACGAAGAAACCTGCAAACTGTTGTCAAAATAAATGGG
AgagaaaaaagtgaaagaacAGCTATCAATCTTACAATACTCATTCGCTG
GTGCATTGTCAGGAGTGGTTTCCAGATTTCTTGGTCAGCCTTTGGATGTT
ATAAAAATCAGACTTCAATTACAGAACAAAGagGCTGGACAGTTGAAATA
TACAGGAGTCCTCAATACTTGCAAGCTTATTTTCAAAGAAGAAGGGCTGT
TTGGGTTTTGgaaaGGTCATGTCCCTGCCCAGGTCCTTTCCATTTTCTAT
GGAAGTGTGcagTTCGCATCCTTCGAAAGATCGAGGAGTTTCCTGAACCC
ATATCTTTGTCAAAGAAAAGAGTTGAATGattttttgtcTGGTGGTAATG
CCGGCATCGTATCATCATTATTTGTGCACCCGTTGGATTTACTGCGTACC
AGAGCTGTCAGTAACCAAGCCAAGCAGTCTTTATCGTTACACATTCTGAT
CAAAAGCACAGCTCAAGAAAGTGGTATTCGAACTTTTTACCAAGGAATCA
TTCCCAACTTGGCGTACGTTTATCCGTATTGTGGATTGAACTTCTTGTTT
TATGGCTTGCTAAACAGGACATGGAACTTACTACAGTTCAGAGAGTCCAG
CGTCAAATCTCTGGCATGTGGTACTATAAGTGGAATCTTCGCAAAAGCTT
TACTTCTACCAATTGATAACGTGAAGAAGAGATTACAAGTGCAAGGTTCT
AAAGACTTCCAATCGTCTTACAAGGGTATGGTTAACTGTCTTCAAAGTGT
GATTCGTGAACAAGGAATACATGCCTTGTATCGTGGTATCGTTCCTTCCG
TGCTAAAGACTGGTCTGGCAACTGGTATTTCTTTTTTCGTCTACGAAGAA
ACCTGCAAACTGTTGTCAAAATAAATGGGAgagaaaaaagtgaaagaacA
GCTATCAATCTTACAATACTCATTCGCTGGTGCATTGTCAGGAGTGGTTT
CCAGATTTCTTGGTCAGCCTTTGGATGTTATAAAAATCAGACTTCAATTA
CAGAACAAAGagGCTGGACAGTTGAAATATACAGGAGTCCTCAATACTTG
CAAGCTTATTTTCAAAGAAGAAGGGCTGTTTGGGTTTTGgaaaGGTCATG
TCCCTGCCCAGGTCCTTTCCATTTTCTATGGAAGTGTGcagTTCGCATCC
TTCGAAAGATCGAGGAGTTTCCTGAACCCATATCTTTGTCAAAGAAAAGA
GTTGAATGattttttgtcTGGTGGTAATGCCGGCATCGTATCATCATTAT
TTGTGCACCCGTTGGATTTACTGCGTACCAGAGCTGTCAGTAACCAAGCC
AAGCAGTCTTTATCGTTACACATTCTGATCAAAAGCACAGCTCAAGAAAG
TGGTATTCGAACTTTTTACCAAGGAATCATTCCCAACTTGGCGTACGTTT
ATCCGTATTGTGGATTGAACTTCTTGTTTTATGGCTTGCTAAACAGGACA
TGGAACTTACTACAGTTCAGAGAGTCCAGCGTCAAATCTCTGGCATGTGG
TACTATAAGTGGAATCTTCGCAAAAGCTTTACTTCTACCAATTGATAACG
TGAAGAAGAGATTACAAGTGCAAGGTTCTAAAGACTTCCAATCGTCTTAC
AAGGGTATGGTTAACTGTCTTCAAAGTGTGATTCGTGAACAAGGAATACA
TGCCTTGTATCGTGGTATCGTTCCTTCCGTGCTAAAGACTGGTCTGGCAA
CTGGTATTTCTTTTTTCGTCTACGAAGAAACCTGCAAACTGTTGTCAAAA
TAAATGGGAgagaaaaaagtgaaagaacAGCTATCAATCTTACAATACTC
ATTCGCTGGTGCATTGTCAGGAGTGGTTTCCAGATTTCTTGGTCAGCCTT
TGGATGTTATAAAAATCAGACTTCAATTACAGAACAAAGagGCTGGACAG
TTGAAATATACAGGAGTCCTCAATACTTGCAAGCTTATTTTCAAAGAAGA
AGGGCTGTTTGGGTTTTGgaaaGGTCATGTCCCTGCCCAGGTCCTTTCCA
TTTTCTATGGAAGTGTGcagTTCGCATCCTTCGAAAGATCGAGGAGTTTC
CTGAACCCATATCTTTGTCAAAGAAAAGAGTTGAATGattttttgtcTGG
TGGTAATGCCGGCATCGTATCATCATTATTTGTGCACCCGTTGGATTTAC
TGCGTACCAGAGCTGTCAGTAACCAAGCCAAGCAGTCTTTATCGTTACAC
ATTCTGATCAAAAGCACAGCTCAAGAAAGTGGTATTCGAACTTTTTACCA
AGGAATCATTCCCAACTTGGCGTACGTTTATCCGTATTGTGGATTGAACT
TCTTGTTTTATGGCTTGCTAAACAGGACATGGAACTTACTACAGTTCAGA
GAGTCCAGCGTCAAATCTCTGGCATGTGGTACTATAAGTGGAATCTTCGC
AAAAGCTTTACTTCTACCAATTGATAACGTGAAGAAGAGATTACAAGTGC
AAGGTTCTAAAGACTTCCAATCGTCTTACAAGGGTATGGTTAACTGTCTT
CAAAGTGTGATTCGTGAACAAGGAATACATGCCTTGTATCGTGGTATCGT
TCCTTCCGTGCTAAAGACTGGTCTGGCAACTGGTATTTCTTTTTTCGTCT
ACGAAGAAACCTGCAAACTGTTGTCAAAATAAATGGGAgagaaaaaagtg
aaagaacAGCTATCAATCTTACAATACTCATTCGCTGGTGCATTGTCAGG
AGTGGTTTCCAGATTTCTTGGTCAGCCTTTGGATGTTATAAAAATCAGAC
TTCAATTACAGAACAAAGagGCTGGACAGTTGAAATATACAGGAGTCCTC
AATACTTGCAAGCTTATTTTCAAAGAAGAAGGGCTGTTTGGGTTTTGgaa
aGGTCATGTCCCTGCCCAGGTCCTTTCCATTTTCTATGGAAGTGTGcagT
TCGCATCCTTCGAAAGATCGAGGAGTTTCCTGAACCCATATCTTTGTCAA
AGAAAAGAGTTGAATGattttttgtcTGGTGGTAATGCCGGCATCGTATC
ATCATTATTTGTGCACCCGTTGGATTTACTGCGTACCAGAGCTGTCAGTA
ACCAAGCCAAGCAGTCTTTATCGTTACACATTCTGATCAAAAGCACAGCT
CAAGAAAGTGGTATTCGAACTTTTTACCAAGGAATCATTCCCAACTTGGC
GTACGTTTATCCGTATTGTGGATTGAACTTCTTGTTTTATGGCTTGCTAA
ACAGGACATGGAACTTACTACAGTTCAGAGAGTCCAGCGTCAAATCTCTG
GCATGTGGTACTATAAGTGGAATCTTCGCAAAAGCTTTACTTCTACCAAT
TGATAACGTGAAGAAGAGATTACAAGTGCAAGGTTCTAAAGACTTCCAAT
CGTCTTACAAGGGTATGGTTAACTGTCTTCAAAGTGTGATTCGTGAACAA
GGAATACATGCCTTGTATCGTGGTATCGTTCCTTCCGTGCTAAAGACTGG
TCTGGCAACTGGTATTTCTTTTTTCGTCTACGAAGAAACCTGCAAACTGT
TGTCAAAATAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_007133	XLOC_007133	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00012704-protein	TCONS_00012704-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000147	supercontig	sc0000147:529359..536394 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.90384	3.63443	2.57809	1.93772	2.84359	1.98076	2.88843	2.74391	1.61676	2.20278	1.60106	1.19138	2.38859	1.81097	2.25471	2.21875	2.56961	2.75249	0.890036	0.674987	1.44321	1.91324	3.85386	3.27766	2.36775	2.37235	1.12001	1.11376	1.89821	2.91791

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR002067	Mit_carrier
IPR023395	Mt_carrier_dom
IPR018108	Mitochondrial_sb/sol_carrier

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport

Blast

[Close]

BLAST of TCONS_00012704 vs. Swiss-Prot (Human)
Match: TPC (Mitochondrial thiamine pyrophosphate carrier OS=Homo sapiens GN=SLC25A19 PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 1.959e-56
Identity = 113/300 (37.67%), Postives = 173/300 (57.67%), Query Frame = 2

Query:   59 LQYSFAGALSGVVSRFLGQPLDVIKIRLQLQNKEAGQ----LKYTGVLNTCKLIFKEEGLFGFWKGHVPAQVLSIFYGSVQFASFERSRSFLNPYLCQRKELND-------FLSGGNAGIVSSLFVHPLDLLRTR-AVSNQAKQSLSLHILIKSTAQESGIRTFYQGIIPNLAYVYPYCGLNFLFYGLLNR--TWNLLQF--RESSVKSLACGTISGIFAKALLLPIDNVKKRLQVQGSKDFQSS------YKGMVNCLQSVIREQGIHALYRGIVPSVLKTGLATGISFFVYEETCKLL 892
             Q + AG++SG+V+R L  P DVIKIR QLQ++   +     KY G+L   + I +EEG   FWKGHVPAQ+LSI YG+VQF SFE     +   L  R  + D       F+ GG A  +++L VHP+D+LRTR A   + K   +L   + +  +  G + FY+G+ P L  ++PY GL F  Y  L     W +     +  ++++L CG+ +G+ +K L  P+D  KKRLQV G +  +++      YKG+++C + V++++G    ++G+ PS+LK  L+TG  FF YE  C + 
Sbjct:   16 FQVAVAGSVSGLVTRALISPFDVIKIRFQLQHERLSRSDPSAKYHGILQASRQILQEEGPTAFWKGHVPAQILSIGYGAVQFLSFE-----MLTELVHRGSVYDAREFSVHFVCGGLAACMATLTVHPVDVLRTRFAAQGEPKVYNTLRHAVGTMYRSEGPQVFYKGLAPTLIAIFPYAGLQFSCYSSLKHLYKWAIPAEGKKNENLQNLLCGSGAGVISKTLTYPLDLFKKRLQVGGFEHARAAFGQVRRYKGLMDCAKQVLQKEGALGFFKGLSPSLLKAALSTGFMFFSYEFFCNVF 310

The following BLAST results are available for this feature:

BLAST of TCONS_00012704 vs. Swiss-Prot (Human)

BLAST of TCONS_00012704 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TPC	1.959e-56	37.67	Mitochondrial thiamine pyrophosphate carrier OS=Ho...	[more]

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TCONS_00012704 (transcript) - C. hemisphaerica